RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 H1FX-AS1Q4G0G2 97 aa5.35□□□□□ -1.55
CLSTN3-209ENST00000539982 C5orf47Q569G3 176 aa5.34□□□□□ -1.55
CLSTN3-209ENST00000539982 TRAV22A0A0B4J277 110 aa5.33□□□□□ -1.56
CLSTN3-209ENST00000539982 H0Y9P7 68 aa5.32□□□□□ -1.56
CLSTN3-209ENST00000539982 KRTAP2-3P0C7H8 128 aa5.32□□□□□ -1.56
CLSTN3-209ENST00000539982 PCP4P48539 62 aa5.32□□□□□ -1.56
CLSTN3-209ENST00000539982 MP68P56378 58 aa5.32□□□□□ -1.56
CLSTN3-209ENST00000539982 Q5W150 140 aa5.32□□□□□ -1.56
CLSTN3-209ENST00000539982 KRTAP2-4Q9BYR9 128 aa5.32□□□□□ -1.56
CLSTN3-209ENST00000539982 KMT2DO14686 5537 aa5.31□□□□□ -1.56
CLSTN3-209ENST00000539982 MDN1Q9NU22 5596 aa5.31□□□□□ -1.56
CLSTN3-209ENST00000539982 MT1BP07438 61 aa5.3□□□□□ -1.56
CLSTN3-209ENST00000539982 H3BPC8 53 aa5.29□□□□□ -1.56
CLSTN3-209ENST00000539982 C20orf197Q8N268 126 aa5.29□□□□□ -1.56
CLSTN3-209ENST00000539982 CCDC179H3BU77 68 aa5.28□□□□□ -1.56
CLSTN3-209ENST00000539982 LINC00208Q96KT6 92 aa5.28□□□□□ -1.56
CLSTN3-209ENST00000539982 KRTAP10-5P60370 271 aa5.27□□□□□ -1.57
CLSTN3-209ENST00000539982 Q5VV11 94 aa5.27□□□□□ -1.57
CLSTN3-209ENST00000539982 C1orf64Q8NEQ6 169 aa5.27□□□□□ -1.57
CLSTN3-209ENST00000539982 SVIPQ8NHG7 77 aa5.26□□□□□ -1.57
CLSTN3-209ENST00000539982 SNURFQ9Y675 71 aa5.26□□□□□ -1.57
CLSTN3-209ENST00000539982 LOC101927531A0A1B0GV80 90 aa5.25□□□□□ -1.57
CLSTN3-209ENST00000539982 KLKP1Q107X0 134 aa5.25□□□□□ -1.57
CLSTN3-209ENST00000539982 KRTAP19-8Q3LI54 63 aa5.24□□□□□ -1.57
CLSTN3-209ENST00000539982 IGKV2-30P06310 120 aa5.23□□□□□ -1.57
CLSTN3-209ENST00000539982 CYP4F30PQ9H0H9 118 aa5.22□□□□□ -1.57
CLSTN3-209ENST00000539982 IGKV2D-30A0A075B6S6 120 aa5.21□□□□□ -1.58
CLSTN3-209ENST00000539982 NDUFC1O43677 76 aa5.21□□□□□ -1.58
CLSTN3-209ENST00000539982 C7orf65Q6ZTY9 151 aa5.21□□□□□ -1.58
CLSTN3-209ENST00000539982 SPRR2GQ9BYE4 73 aa5.2□□□□□ -1.58
CLSTN3-209ENST00000539982 CYSTM1Q9H1C7 97 aa5.2□□□□□ -1.58
CLSTN3-209ENST00000539982 H7BZZ5 65 aa5.17□□□□□ -1.58
CLSTN3-209ENST00000539982 SPRR2EP22531 72 aa5.12□□□□□ -1.59
CLSTN3-209ENST00000539982 SPRR2BP35325 72 aa5.12□□□□□ -1.59
CLSTN3-209ENST00000539982 SPRR2AP35326 72 aa5.12□□□□□ -1.59
CLSTN3-209ENST00000539982 KRTAP2-2Q9BYT5 123 aa5.12□□□□□ -1.59
CLSTN3-209ENST00000539982 KRTAP2-1Q9BYU5 128 aa5.12□□□□□ -1.59
CLSTN3-209ENST00000539982 TMEM258P61165 79 aa5.11□□□□□ -1.59
CLSTN3-209ENST00000539982 SPANXA2-OT1Q8N9U9 137 aa5.11□□□□□ -1.59
CLSTN3-209ENST00000539982 C4orf26Q17RF5 130 aa5.1□□□□□ -1.59
CLSTN3-209ENST00000539982 SPRR2FQ96RM1 72 aa5.1□□□□□ -1.59
CLSTN3-209ENST00000539982 CSAG1Q6PB30 78 aa5.08□□□□□ -1.6
CLSTN3-209ENST00000539982 ATP5EP56381 51 aaPredicted RBP5.07□□□□□ -1.6
CLSTN3-209ENST00000539982 DMAC1Q96GE9 116 aa5.04□□□□□ -1.6
CLSTN3-209ENST00000539982 S4R3F8 94 aa5.04□□□□□ -1.6
CLSTN3-209ENST00000539982 A8MUN3 132 aa5.02□□□□□ -1.61
CLSTN3-209ENST00000539982 KRTAP3-1Q9BYR8 98 aa5.02□□□□□ -1.61
CLSTN3-209ENST00000539982 ACYP2P14621 99 aa5.01□□□□□ -1.61
CLSTN3-209ENST00000539982 LCE1AQ5T7P2 110 aa5.01□□□□□ -1.61
CLSTN3-209ENST00000539982 LCA10Q71F78 164 aa5.01□□□□□ -1.61
CLSTN3-209ENST00000539982 CRIPTQ9P021 101 aa4.98□□□□□ -1.61
CLSTN3-209ENST00000539982 SPRR2DP22532 72 aa4.96□□□□□ -1.62
CLSTN3-209ENST00000539982 KRTAP8-1Q8IUC2 63 aa4.96□□□□□ -1.62
CLSTN3-209ENST00000539982 COA5Q86WW8 74 aa4.95□□□□□ -1.62
CLSTN3-209ENST00000539982 SERP1Q9Y6X1 66 aa4.95□□□□□ -1.62
CLSTN3-209ENST00000539982 GPR98Q8WXG9 6306 aa4.94□□□□□ -1.62
CLSTN3-209ENST00000539982 CHKB-CPT1BH3BT56 60 aa4.92□□□□□ -1.62
CLSTN3-209ENST00000539982 PRO2289Q9P1D8 64 aa4.92□□□□□ -1.62
CLSTN3-209ENST00000539982 KRTAP3-3Q9BYR6 98 aa4.91□□□□□ -1.62
CLSTN3-209ENST00000539982 RPS28P62857 69 aaKnown RBP4.9□□□□□ -1.63
CLSTN3-209ENST00000539982 MT1XP80297 61 aa4.87□□□□□ -1.63
CLSTN3-209ENST00000539982 LCE3BQ5TA77 95 aa4.86□□□□□ -1.63
CLSTN3-209ENST00000539982 SPTSSBQ8NFR3 76 aa4.86□□□□□ -1.63
CLSTN3-209ENST00000539982 KRTAP12-2P59991 146 aa4.84□□□□□ -1.63
CLSTN3-209ENST00000539982 SMIM26A0A096LP01 95 aa4.81□□□□□ -1.64
CLSTN3-209ENST00000539982 KRTAP4-8A0A0G2JLE6 195 aa4.8□□□□□ -1.64
CLSTN3-209ENST00000539982 KRTAP4-8Q9BYQ9 185 aa4.8□□□□□ -1.64
CLSTN3-209ENST00000539982 PLAC4Q8WY50 150 aa4.78□□□□□ -1.64
CLSTN3-209ENST00000539982 H0YAA0 97 aa4.77□□□□□ -1.65
CLSTN3-209ENST00000539982 DSTQ03001 7570 aaKnown RBP4.76□□□□□ -1.65
CLSTN3-209ENST00000539982 V9GYY9 64 aa4.74□□□□□ -1.65
CLSTN3-209ENST00000539982 Q1T7F1 81 aa4.73□□□□□ -1.65
CLSTN3-209ENST00000539982 LINC01558Q9Y6Z2 57 aa4.73□□□□□ -1.65
CLSTN3-209ENST00000539982 SEC61GP60059 68 aa4.7□□□□□ -1.66
CLSTN3-209ENST00000539982 ADM2Q7Z4H4 148 aa4.7□□□□□ -1.66
CLSTN3-209ENST00000539982 A0A1B0GU69 56 aa4.69□□□□□ -1.66
CLSTN3-209ENST00000539982 PRR15LQ9BU68 103 aa4.69□□□□□ -1.66
CLSTN3-209ENST00000539982 PSPHP1O15172 72 aa4.64□□□□□ -1.67
CLSTN3-209ENST00000539982 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
CLSTN3-209ENST00000539982 KRTAP3-2Q9BYR7 98 aa4.64□□□□□ -1.67
CLSTN3-209ENST00000539982 KRTAP10-12P60413 245 aa4.63□□□□□ -1.67
CLSTN3-209ENST00000539982 KRTAP4-9Q9BYQ8 210 aa4.63□□□□□ -1.67
CLSTN3-209ENST00000539982 P0C880 135 aa4.61□□□□□ -1.67
CLSTN3-209ENST00000539982 R4GN34 69 aa4.61□□□□□ -1.67
CLSTN3-209ENST00000539982 A0A1B0GU33 70 aa4.57□□□□□ -1.68
CLSTN3-209ENST00000539982 M0QZ58 72 aa4.55□□□□□ -1.68
CLSTN3-209ENST00000539982 UQCR11O14957 56 aa4.53□□□□□ -1.68
CLSTN3-209ENST00000539982 A6NED7 52 aa4.52□□□□□ -1.69
CLSTN3-209ENST00000539982 LINC01554Q52M75 96 aa4.51□□□□□ -1.69
CLSTN3-209ENST00000539982 KRTAP13-4Q3LI77 160 aa4.48□□□□□ -1.69
CLSTN3-209ENST00000539982 SPATA8Q6RVD6 105 aa4.48□□□□□ -1.69
CLSTN3-209ENST00000539982 MIR22HGQ0VDD5 57 aa4.47□□□□□ -1.69
CLSTN3-209ENST00000539982 LCE1DQ5T752 114 aa4.47□□□□□ -1.69
CLSTN3-209ENST00000539982 LCE5AQ5TCM9 118 aa4.47□□□□□ -1.69
CLSTN3-209ENST00000539982 CDC42SE1Q9NRR8 79 aa4.42□□□□□ -1.7
CLSTN3-209ENST00000539982 A8MU10 97 aa4.41□□□□□ -1.7
CLSTN3-209ENST00000539982 A0A0D9SG42 100 aa4.4□□□□□ -1.71
CLSTN3-209ENST00000539982 BRK1Q8WUW1 75 aa4.4□□□□□ -1.71
CLSTN3-209ENST00000539982 HMCN1Q96RW7 5635 aa4.4□□□□□ -1.71
CLSTN3-209ENST00000539982 KRTAP19-3Q7Z4W3 81 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms