RNA–Protein interactions for RNA: ENST00000533499.1

NXF1-216, Transcript of nuclear RNA export factor 1, humanhuman

TSL 5

Gene NXF1, Length 936 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-216ENST00000533499 MT2AP02795 61 aa8.29□□□□□ -1.08
NXF1-216ENST00000533499 ACYP2P14621 99 aa8.28□□□□□ -1.08
NXF1-216ENST00000533499 KRTAP10-10P60014 251 aa8.28□□□□□ -1.08
NXF1-216ENST00000533499 KRTAP3-3Q9BYR6 98 aa8.28□□□□□ -1.08
NXF1-216ENST00000533499 SPANXA2-OT1Q8N9U9 137 aa8.26□□□□□ -1.09
NXF1-216ENST00000533499 CCDC179H3BU77 68 aa8.25□□□□□ -1.09
NXF1-216ENST00000533499 CYSTM1Q9H1C7 97 aa8.24□□□□□ -1.09
NXF1-216ENST00000533499 MT1FP04733 61 aa8.23□□□□□ -1.09
NXF1-216ENST00000533499 CHKB-CPT1BH3BT56 60 aa8.21□□□□□ -1.1
NXF1-216ENST00000533499 H7BZZ5 65 aa8.19□□□□□ -1.1
NXF1-216ENST00000533499 KRTAP9-2Q9BYQ4 174 aa8.16□□□□□ -1.1
NXF1-216ENST00000533499 LCE2DQ5TA82 110 aaPredicted RBP8.13□□□□□ -1.11
NXF1-216ENST00000533499 SPTSSBQ8NFR3 76 aa8.11□□□□□ -1.11
NXF1-216ENST00000533499 COA5Q86WW8 74 aa8.07□□□□□ -1.12
NXF1-216ENST00000533499 ADM2Q7Z4H4 148 aa8.06□□□□□ -1.12
NXF1-216ENST00000533499 KRTAP9-3Q9BYQ3 159 aa8.04□□□□□ -1.12
NXF1-216ENST00000533499 H0YAA0 97 aa8□□□□□ -1.13
NXF1-216ENST00000533499 ATP5EP56381 51 aaPredicted RBP7.95□□□□□ -1.14
NXF1-216ENST00000533499 TMEM258P61165 79 aa7.93□□□□□ -1.14
NXF1-216ENST00000533499 LCE2BO14633 110 aa7.92□□□□□ -1.14
NXF1-216ENST00000533499 P0C880 135 aa7.9□□□□□ -1.14
NXF1-216ENST00000533499 CRIPTQ9P021 101 aa7.89□□□□□ -1.15
NXF1-216ENST00000533499 FSIP2Q5CZC0 6907 aa7.86□□□□□ -1.15
NXF1-216ENST00000533499 PCP4P48539 62 aa7.86□□□□□ -1.15
NXF1-216ENST00000533499 KRTAP3-2Q9BYR7 98 aa7.86□□□□□ -1.15
NXF1-216ENST00000533499 USH2AO75445 5202 aa7.86□□□□□ -1.15
NXF1-216ENST00000533499 KRTAP19-1Q8IUB9 90 aa7.85□□□□□ -1.15
NXF1-216ENST00000533499 SPRR2GQ9BYE4 73 aa7.81□□□□□ -1.16
NXF1-216ENST00000533499 R4GN34 69 aa7.81□□□□□ -1.16
NXF1-216ENST00000533499 SEC61GP60059 68 aa7.8□□□□□ -1.16
NXF1-216ENST00000533499 M0QZ58 72 aa7.79□□□□□ -1.16
NXF1-216ENST00000533499 CRCT1Q9UGL9 99 aa7.79□□□□□ -1.16
NXF1-216ENST00000533499 SERP1Q9Y6X1 66 aa7.77□□□□□ -1.17
NXF1-216ENST00000533499 KRTAP9-6A0A140TA67 174 aa7.74□□□□□ -1.17
NXF1-216ENST00000533499 Q5VV11 94 aa7.74□□□□□ -1.17
NXF1-216ENST00000533499 LINC01554Q52M75 96 aa7.71□□□□□ -1.18
NXF1-216ENST00000533499 SSPOA2VEC9 5147 aa7.7□□□□□ -1.18
NXF1-216ENST00000533499 KRTAP19-8Q3LI54 63 aa7.69□□□□□ -1.18
NXF1-216ENST00000533499 A0A1B0GU69 56 aa7.67□□□□□ -1.18
NXF1-216ENST00000533499 MT1BP07438 61 aa7.65□□□□□ -1.18
NXF1-216ENST00000533499 A0A1B0GU33 70 aa7.58□□□□□ -1.2
NXF1-216ENST00000533499 PRR15LQ9BU68 103 aa7.58□□□□□ -1.2
NXF1-216ENST00000533499 PLAC4Q8WY50 150 aa7.57□□□□□ -1.2
NXF1-216ENST00000533499 KRTAP13-4Q3LI77 160 aa7.55□□□□□ -1.2
NXF1-216ENST00000533499 LINC01558Q9Y6Z2 57 aa7.55□□□□□ -1.2
NXF1-216ENST00000533499 KRTAP19-6Q3LI70 58 aa7.54□□□□□ -1.2
NXF1-216ENST00000533499 SPATA8Q6RVD6 105 aa7.51□□□□□ -1.21
NXF1-216ENST00000533499 A0A0D9SG42 100 aa7.49□□□□□ -1.21
NXF1-216ENST00000533499 A6NN06 94 aa7.46□□□□□ -1.22
NXF1-216ENST00000533499 FCGBPQ9Y6R7 5405 aaPredicted RBP7.44□□□□□ -1.22
NXF1-216ENST00000533499 SMIM26A0A096LP01 95 aa7.42□□□□□ -1.22
NXF1-216ENST00000533499 V9GYY9 64 aa7.42□□□□□ -1.22
NXF1-216ENST00000533499 KRTAP10-5P60370 271 aa7.38□□□□□ -1.23
NXF1-216ENST00000533499 RPS28P62857 69 aaKnown RBP7.38□□□□□ -1.23
NXF1-216ENST00000533499 PSPHP1O15172 72 aa7.37□□□□□ -1.23
NXF1-216ENST00000533499 Q1T7F1 81 aa7.36□□□□□ -1.23
NXF1-216ENST00000533499 SPINT4Q6UDR6 99 aa7.35□□□□□ -1.23
NXF1-216ENST00000533499 A8MU10 97 aa7.33□□□□□ -1.24
NXF1-216ENST00000533499 PRO2289Q9P1D8 64 aa7.33□□□□□ -1.24
NXF1-216ENST00000533499 UQCR11O14957 56 aa7.31□□□□□ -1.24
NXF1-216ENST00000533499 CAMK2N1Q7Z7J9 78 aa7.3□□□□□ -1.24
NXF1-216ENST00000533499 MT1XP80297 61 aa7.29□□□□□ -1.24
NXF1-216ENST00000533499 KRTAP12-1P59990 96 aa7.23□□□□□ -1.25
NXF1-216ENST00000533499 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.22□□□□□ -1.25
NXF1-216ENST00000533499 MIR22HGQ0VDD5 57 aa7.21□□□□□ -1.26
NXF1-216ENST00000533499 KRTAP12-2P59991 146 aa7.2□□□□□ -1.26
NXF1-216ENST00000533499 A6NED7 52 aa7.15□□□□□ -1.26
NXF1-216ENST00000533499 MACF1Q9UPN3 7388 aaKnown RBP7.13□□□□□ -1.27
NXF1-216ENST00000533499 SYNE2Q8WXH0 6885 aaKnown RBP7.02□□□□□ -1.29
NXF1-216ENST00000533499 K7ERS5 55 aa7.02□□□□□ -1.29
NXF1-216ENST00000533499 KRTAP9-7A8MTY7 169 aa7.01□□□□□ -1.29
NXF1-216ENST00000533499 KRTAP10-7P60409 375 aaPredicted RBP6.99□□□□□ -1.29
NXF1-216ENST00000533499 KRTAP10-12P60413 245 aa6.9□□□□□ -1.3
NXF1-216ENST00000533499 KRTAP6-3Q3LI67 103 aa6.88□□□□□ -1.31
NXF1-216ENST00000533499 C10orf95Q9H7T3 257 aa6.88□□□□□ -1.31
NXF1-216ENST00000533499 KRTAP4-8A0A0G2JLE6 195 aa6.87□□□□□ -1.31
NXF1-216ENST00000533499 KRTAP4-8Q9BYQ9 185 aa6.87□□□□□ -1.31
NXF1-216ENST00000533499 CDC42SE1Q9NRR8 79 aa6.87□□□□□ -1.31
NXF1-216ENST00000533499 KMT2DO14686 5537 aa6.87□□□□□ -1.31
NXF1-216ENST00000533499 KRTAP8-1Q8IUC2 63 aa6.86□□□□□ -1.31
NXF1-216ENST00000533499 TNP1P09430 55 aa6.81□□□□□ -1.32
NXF1-216ENST00000533499 SPRR2FQ96RM1 72 aa6.75□□□□□ -1.33
NXF1-216ENST00000533499 KRTAP5-9P26371 169 aa6.7□□□□□ -1.34
NXF1-216ENST00000533499 BRK1Q8WUW1 75 aa6.69□□□□□ -1.34
NXF1-216ENST00000533499 KRTAP25-1Q3LHN0 102 aa6.62□□□□□ -1.35
NXF1-216ENST00000533499 MUC12Q9UKN1 5478 aa6.6□□□□□ -1.35
NXF1-216ENST00000533499 ROMO1P60602 79 aa6.6□□□□□ -1.35
NXF1-216ENST00000533499 LCE3AQ5TA76 89 aa6.6□□□□□ -1.35
NXF1-216ENST00000533499 NEBP20929 6669 aa6.56□□□□□ -1.36
NXF1-216ENST00000533499 SPRR2EP22531 72 aa6.54□□□□□ -1.36
NXF1-216ENST00000533499 SPRR2BP35325 72 aa6.54□□□□□ -1.36
NXF1-216ENST00000533499 SPRR2AP35326 72 aa6.54□□□□□ -1.36
NXF1-216ENST00000533499 KRTAP19-5Q3LI72 72 aa6.52□□□□□ -1.37
NXF1-216ENST00000533499 MDN1Q9NU22 5596 aa6.49□□□□□ -1.37
NXF1-216ENST00000533499 KRTAP19-7Q3SYF9 63 aa6.49□□□□□ -1.37
NXF1-216ENST00000533499 LCE1AQ5T7P2 110 aa6.44□□□□□ -1.38
NXF1-216ENST00000533499 MT1EP04732 61 aa6.43□□□□□ -1.38
NXF1-216ENST00000533499 KRTAP12-3P60328 96 aa6.35□□□□□ -1.39
NXF1-216ENST00000533499 KRTAP23-1A1A580 65 aa6.31□□□□□ -1.4
NXF1-216ENST00000533499 SPRR2DP22532 72 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms