RNA–Protein interactions for RNA: ENST00000532029.6

LRRK1-208, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 1 (best) BASIC

Gene LRRK1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-208ENST00000532029 MT1FP04733 61 aa10.56□□□□□ -0.72
LRRK1-208ENST00000532029 CRCT1Q9UGL9 99 aa10.56□□□□□ -0.72
LRRK1-208ENST00000532029 C20orf197Q8N268 126 aa10.55□□□□□ -0.72
LRRK1-208ENST00000532029 DMAC1Q96GE9 116 aa10.51□□□□□ -0.73
LRRK1-208ENST00000532029 KRTAP3-3Q9BYR6 98 aa10.51□□□□□ -0.73
LRRK1-208ENST00000532029 NDUFC1O43677 76 aa10.49□□□□□ -0.73
LRRK1-208ENST00000532029 COX7CP15954 63 aa10.47□□□□□ -0.73
LRRK1-208ENST00000532029 ACYP2P14621 99 aa10.38□□□□□ -0.75
LRRK1-208ENST00000532029 ANAPC13Q9BS18 74 aa10.38□□□□□ -0.75
LRRK1-208ENST00000532029 KRTAP9-3Q9BYQ3 159 aa10.37□□□□□ -0.75
LRRK1-208ENST00000532029 SPANXA2-OT1Q8N9U9 137 aa10.36□□□□□ -0.75
LRRK1-208ENST00000532029 USH2AO75445 5202 aa10.27□□□□□ -0.77
LRRK1-208ENST00000532029 H0YAA0 97 aa10.23□□□□□ -0.77
LRRK1-208ENST00000532029 CHKB-CPT1BH3BT56 60 aa10.23□□□□□ -0.77
LRRK1-208ENST00000532029 LCE2BO14633 110 aa10.21□□□□□ -0.77
LRRK1-208ENST00000532029 SPTSSBQ8NFR3 76 aa10.19□□□□□ -0.78
LRRK1-208ENST00000532029 SSPOA2VEC9 5147 aa10.17□□□□□ -0.78
LRRK1-208ENST00000532029 H7BZZ5 65 aa10.17□□□□□ -0.78
LRRK1-208ENST00000532029 CYSTM1Q9H1C7 97 aa10.17□□□□□ -0.78
LRRK1-208ENST00000532029 ADM2Q7Z4H4 148 aa10.16□□□□□ -0.78
LRRK1-208ENST00000532029 CCDC179H3BU77 68 aa10.12□□□□□ -0.79
LRRK1-208ENST00000532029 CRIPTQ9P021 101 aa10.1□□□□□ -0.79
LRRK1-208ENST00000532029 KRTAP19-1Q8IUB9 90 aa10.07□□□□□ -0.8
LRRK1-208ENST00000532029 COA5Q86WW8 74 aa10.05□□□□□ -0.8
LRRK1-208ENST00000532029 SPRR2GQ9BYE4 73 aa10.03□□□□□ -0.8
LRRK1-208ENST00000532029 P0C880 135 aa9.96□□□□□ -0.82
LRRK1-208ENST00000532029 KRTAP3-2Q9BYR7 98 aa9.94□□□□□ -0.82
LRRK1-208ENST00000532029 FCGBPQ9Y6R7 5405 aaPredicted RBP9.9□□□□□ -0.83
LRRK1-208ENST00000532029 ATP5EP56381 51 aaPredicted RBP9.89□□□□□ -0.83
LRRK1-208ENST00000532029 KRTAP19-8Q3LI54 63 aa9.89□□□□□ -0.83
LRRK1-208ENST00000532029 Q5VV11 94 aa9.89□□□□□ -0.83
LRRK1-208ENST00000532029 R4GN34 69 aa9.88□□□□□ -0.83
LRRK1-208ENST00000532029 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.84□□□□□ -0.83
LRRK1-208ENST00000532029 M0QZ58 72 aa9.82□□□□□ -0.84
LRRK1-208ENST00000532029 MT1BP07438 61 aa9.81□□□□□ -0.84
LRRK1-208ENST00000532029 KRTAP9-7A8MTY7 169 aa9.8□□□□□ -0.84
LRRK1-208ENST00000532029 TMEM258P61165 79 aa9.8□□□□□ -0.84
LRRK1-208ENST00000532029 KRTAP19-6Q3LI70 58 aa9.79□□□□□ -0.84
LRRK1-208ENST00000532029 SEC61GP60059 68 aa9.74□□□□□ -0.85
LRRK1-208ENST00000532029 SERP1Q9Y6X1 66 aa9.7□□□□□ -0.86
LRRK1-208ENST00000532029 LINC01554Q52M75 96 aa9.66□□□□□ -0.86
LRRK1-208ENST00000532029 PLAC4Q8WY50 150 aa9.6□□□□□ -0.87
LRRK1-208ENST00000532029 A6NN06 94 aa9.57□□□□□ -0.88
LRRK1-208ENST00000532029 A0A1B0GU69 56 aa9.55□□□□□ -0.88
LRRK1-208ENST00000532029 MACF1Q9UPN3 7388 aaKnown RBP9.54□□□□□ -0.88
LRRK1-208ENST00000532029 KRTAP10-5P60370 271 aa9.5□□□□□ -0.89
LRRK1-208ENST00000532029 PCP4P48539 62 aa9.49□□□□□ -0.89
LRRK1-208ENST00000532029 KRTAP13-4Q3LI77 160 aa9.49□□□□□ -0.89
LRRK1-208ENST00000532029 A0A1B0GU33 70 aa9.48□□□□□ -0.89
LRRK1-208ENST00000532029 SYNE2Q8WXH0 6885 aaKnown RBP9.45□□□□□ -0.9
LRRK1-208ENST00000532029 PRR15LQ9BU68 103 aa9.43□□□□□ -0.9
LRRK1-208ENST00000532029 LINC01558Q9Y6Z2 57 aa9.41□□□□□ -0.9
LRRK1-208ENST00000532029 PRO2289Q9P1D8 64 aa9.39□□□□□ -0.91
LRRK1-208ENST00000532029 SPATA8Q6RVD6 105 aa9.37□□□□□ -0.91
LRRK1-208ENST00000532029 MT1XP80297 61 aa9.32□□□□□ -0.92
LRRK1-208ENST00000532029 A0A0D9SG42 100 aa9.31□□□□□ -0.92
LRRK1-208ENST00000532029 SMIM26A0A096LP01 95 aa9.24□□□□□ -0.93
LRRK1-208ENST00000532029 KRTAP6-3Q3LI67 103 aa9.2□□□□□ -0.94
LRRK1-208ENST00000532029 V9GYY9 64 aa9.2□□□□□ -0.94
LRRK1-208ENST00000532029 CAMK2N1Q7Z7J9 78 aa9.18□□□□□ -0.94
LRRK1-208ENST00000532029 SPINT4Q6UDR6 99 aa9.16□□□□□ -0.94
LRRK1-208ENST00000532029 A8MU10 97 aa9.12□□□□□ -0.95
LRRK1-208ENST00000532029 Q1T7F1 81 aa9.12□□□□□ -0.95
LRRK1-208ENST00000532029 UQCR11O14957 56 aa9.1□□□□□ -0.95
LRRK1-208ENST00000532029 KRTAP12-1P59990 96 aa9.1□□□□□ -0.95
LRRK1-208ENST00000532029 RPS28P62857 69 aaKnown RBP9.09□□□□□ -0.95
LRRK1-208ENST00000532029 PSPHP1O15172 72 aa9.04□□□□□ -0.96
LRRK1-208ENST00000532029 KRTAP12-2P59991 146 aa9.04□□□□□ -0.96
LRRK1-208ENST00000532029 MIR22HGQ0VDD5 57 aa8.94□□□□□ -0.98
LRRK1-208ENST00000532029 NEBP20929 6669 aa8.92□□□□□ -0.98
LRRK1-208ENST00000532029 KRTAP10-7P60409 375 aaPredicted RBP8.91□□□□□ -0.98
LRRK1-208ENST00000532029 MUC12Q9UKN1 5478 aa8.88□□□□□ -0.99
LRRK1-208ENST00000532029 KRTAP10-12P60413 245 aa8.86□□□□□ -0.99
LRRK1-208ENST00000532029 KRTAP5-9P26371 169 aa8.8□□□□□ -1
LRRK1-208ENST00000532029 A6NED7 52 aa8.79□□□□□ -1
LRRK1-208ENST00000532029 KRTAP8-1Q8IUC2 63 aa8.79□□□□□ -1
LRRK1-208ENST00000532029 KMT2DO14686 5537 aa8.76□□□□□ -1.01
LRRK1-208ENST00000532029 KRTAP4-8A0A0G2JLE6 195 aa8.76□□□□□ -1.01
LRRK1-208ENST00000532029 KRTAP4-8Q9BYQ9 185 aa8.76□□□□□ -1.01
LRRK1-208ENST00000532029 K7ERS5 55 aa8.72□□□□□ -1.01
LRRK1-208ENST00000532029 SPRR2FQ96RM1 72 aa8.66□□□□□ -1.02
LRRK1-208ENST00000532029 MDN1Q9NU22 5596 aa8.65□□□□□ -1.02
LRRK1-208ENST00000532029 C10orf95Q9H7T3 257 aa8.65□□□□□ -1.02
LRRK1-208ENST00000532029 TNP1P09430 55 aa8.58□□□□□ -1.04
LRRK1-208ENST00000532029 KRTAP20-1Q3LI63 56 aa8.53□□□□□ -1.04
LRRK1-208ENST00000532029 CDC42SE1Q9NRR8 79 aa8.49□□□□□ -1.05
LRRK1-208ENST00000532029 SPRR2EP22531 72 aa8.42□□□□□ -1.06
LRRK1-208ENST00000532029 SPRR2BP35325 72 aa8.42□□□□□ -1.06
LRRK1-208ENST00000532029 SPRR2AP35326 72 aa8.42□□□□□ -1.06
LRRK1-208ENST00000532029 KRTAP25-1Q3LHN0 102 aa8.34□□□□□ -1.07
LRRK1-208ENST00000532029 LCE1AQ5T7P2 110 aa8.34□□□□□ -1.07
LRRK1-208ENST00000532029 LCE3AQ5TA76 89 aa8.33□□□□□ -1.08
LRRK1-208ENST00000532029 KRTAP19-7Q3SYF9 63 aa8.32□□□□□ -1.08
LRRK1-208ENST00000532029 KRTAP2-3P0C7H8 128 aa8.27□□□□□ -1.09
LRRK1-208ENST00000532029 KRTAP19-5Q3LI72 72 aa8.27□□□□□ -1.09
LRRK1-208ENST00000532029 KRTAP2-4Q9BYR9 128 aa8.27□□□□□ -1.09
LRRK1-208ENST00000532029 MT1EP04732 61 aa8.24□□□□□ -1.09
LRRK1-208ENST00000532029 ROMO1P60602 79 aa8.19□□□□□ -1.1
LRRK1-208ENST00000532029 SPRR2DP22532 72 aa8.13□□□□□ -1.11
LRRK1-208ENST00000532029 BRK1Q8WUW1 75 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms