RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PRAC1Q96KF2 57 aa3.89□□□□□ -1.79
CD44-228ENST00000528455 TRAV7A0A075B6U4 112 aa3.88□□□□□ -1.79
CD44-228ENST00000528455 TRAV22A0A0B4J277 110 aa3.86□□□□□ -1.79
CD44-228ENST00000528455 H3BPC8 53 aa3.85□□□□□ -1.79
CD44-228ENST00000528455 MP68P56378 58 aa3.85□□□□□ -1.79
CD44-228ENST00000528455 SPINK7P58062 85 aa3.85□□□□□ -1.79
CD44-228ENST00000528455 SERP2Q8N6R1 65 aa3.85□□□□□ -1.79
CD44-228ENST00000528455 H0Y9P7 68 aa3.84□□□□□ -1.79
CD44-228ENST00000528455 LOC101927531A0A1B0GV80 90 aa3.83□□□□□ -1.8
CD44-228ENST00000528455 KRTAP10-6P60371 365 aaPredicted RBP3.82□□□□□ -1.8
CD44-228ENST00000528455 C1orf64Q8NEQ6 169 aa3.82□□□□□ -1.8
CD44-228ENST00000528455 LINC00208Q96KT6 92 aa3.82□□□□□ -1.8
CD44-228ENST00000528455 CYP4F30PQ9H0H9 118 aa3.82□□□□□ -1.8
CD44-228ENST00000528455 C7orf65Q6ZTY9 151 aa3.81□□□□□ -1.8
CD44-228ENST00000528455 KRTAP4-1Q9BYQ7 146 aa3.81□□□□□ -1.8
CD44-228ENST00000528455 COX7CP15954 63 aa3.8□□□□□ -1.8
CD44-228ENST00000528455 ANAPC13Q9BS18 74 aa3.79□□□□□ -1.8
CD44-228ENST00000528455 HRES1P13985 223 aa3.77□□□□□ -1.81
CD44-228ENST00000528455 KLKP1Q107X0 134 aa3.76□□□□□ -1.81
CD44-228ENST00000528455 C20orf197Q8N268 126 aa3.76□□□□□ -1.81
CD44-228ENST00000528455 RBM12B-AS1Q9P1G2 102 aa3.76□□□□□ -1.81
CD44-228ENST00000528455 NDUFC1O43677 76 aa3.73□□□□□ -1.81
CD44-228ENST00000528455 COX6B2Q6YFQ2 88 aa3.73□□□□□ -1.81
CD44-228ENST00000528455 SNURFQ9Y675 71 aa3.73□□□□□ -1.81
CD44-228ENST00000528455 NDUFAF8A1L188 74 aa3.72□□□□□ -1.81
CD44-228ENST00000528455 C4orf26Q17RF5 130 aa3.72□□□□□ -1.81
CD44-228ENST00000528455 KRTAP19-2Q3LHN2 52 aa3.72□□□□□ -1.81
CD44-228ENST00000528455 LCE1FQ5T754 118 aa3.72□□□□□ -1.81
CD44-228ENST00000528455 FSIP2Q5CZC0 6907 aa3.72□□□□□ -1.81
CD44-228ENST00000528455 KRTAP10-7P60409 375 aaPredicted RBP3.71□□□□□ -1.82
CD44-228ENST00000528455 SPANXA2-OT1Q8N9U9 137 aa3.7□□□□□ -1.82
CD44-228ENST00000528455 FAM236DA0A1B0GTK5 79 aa3.69□□□□□ -1.82
CD44-228ENST00000528455 A8MUN3 132 aa3.69□□□□□ -1.82
CD44-228ENST00000528455 CCDC179H3BU77 68 aa3.69□□□□□ -1.82
CD44-228ENST00000528455 FAM236CP0DP71 79 aa3.69□□□□□ -1.82
CD44-228ENST00000528455 H1FX-AS1Q4G0G2 97 aa3.69□□□□□ -1.82
CD44-228ENST00000528455 H7BZZ5 65 aa3.67□□□□□ -1.82
CD44-228ENST00000528455 MT1HP80294 61 aa3.67□□□□□ -1.82
CD44-228ENST00000528455 ACYP2P14621 99 aa3.65□□□□□ -1.83
CD44-228ENST00000528455 M0R2T5 61 aa3.64□□□□□ -1.83
CD44-228ENST00000528455 DMAC1Q96GE9 116 aa3.64□□□□□ -1.83
CD44-228ENST00000528455 CYSTM1Q9H1C7 97 aa3.64□□□□□ -1.83
CD44-228ENST00000528455 LCE1EQ5T753 118 aa3.63□□□□□ -1.83
CD44-228ENST00000528455 FLGP20930 4061 aaPredicted RBP3.63□□□□□ -1.83
CD44-228ENST00000528455 KRTAP10-12P60413 245 aa3.61□□□□□ -1.83
CD44-228ENST00000528455 ATP5EP56381 51 aaPredicted RBP3.6□□□□□ -1.83
CD44-228ENST00000528455 TMEM258P61165 79 aa3.59□□□□□ -1.83
CD44-228ENST00000528455 S4R3F8 94 aa3.59□□□□□ -1.83
CD44-228ENST00000528455 CSAG1Q6PB30 78 aa3.58□□□□□ -1.84
CD44-228ENST00000528455 LCA10Q71F78 164 aa3.58□□□□□ -1.84
CD44-228ENST00000528455 KRTAP5-11Q6L8G4 156 aa3.57□□□□□ -1.84
CD44-228ENST00000528455 CRCT1Q9UGL9 99 aa3.57□□□□□ -1.84
CD44-228ENST00000528455 SPTSSBQ8NFR3 76 aa3.55□□□□□ -1.84
CD44-228ENST00000528455 CHKB-CPT1BH3BT56 60 aa3.54□□□□□ -1.84
CD44-228ENST00000528455 KRTAP10-5P60370 271 aa3.53□□□□□ -1.84
CD44-228ENST00000528455 COA5Q86WW8 74 aa3.53□□□□□ -1.84
CD44-228ENST00000528455 H0YAA0 97 aa3.49□□□□□ -1.85
CD44-228ENST00000528455 RPS28P62857 69 aaKnown RBP3.49□□□□□ -1.85
CD44-228ENST00000528455 SERP1Q9Y6X1 66 aa3.49□□□□□ -1.85
CD44-228ENST00000528455 USH2AO75445 5202 aa3.47□□□□□ -1.85
CD44-228ENST00000528455 LCE3CQ5T5A8 94 aa3.47□□□□□ -1.85
CD44-228ENST00000528455 MT2AP02795 61 aa3.42□□□□□ -1.86
CD44-228ENST00000528455 SEC61GP60059 68 aa3.42□□□□□ -1.86
CD44-228ENST00000528455 ADM2Q7Z4H4 148 aa3.42□□□□□ -1.86
CD44-228ENST00000528455 SSPOA2VEC9 5147 aa3.42□□□□□ -1.86
CD44-228ENST00000528455 KRTAP10-10P60014 251 aa3.41□□□□□ -1.86
CD44-228ENST00000528455 CRIPTQ9P021 101 aa3.41□□□□□ -1.86
CD44-228ENST00000528455 SMIM26A0A096LP01 95 aa3.4□□□□□ -1.87
CD44-228ENST00000528455 MT1FP04733 61 aa3.39□□□□□ -1.87
CD44-228ENST00000528455 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.39□□□□□ -1.87
CD44-228ENST00000528455 LINC01558Q9Y6Z2 57 aa3.39□□□□□ -1.87
CD44-228ENST00000528455 V9GYY9 64 aa3.38□□□□□ -1.87
CD44-228ENST00000528455 A0A1B0GU69 56 aa3.37□□□□□ -1.87
CD44-228ENST00000528455 P0C880 135 aa3.37□□□□□ -1.87
CD44-228ENST00000528455 Q1T7F1 81 aa3.37□□□□□ -1.87
CD44-228ENST00000528455 FCGBPQ9Y6R7 5405 aaPredicted RBP3.35□□□□□ -1.87
CD44-228ENST00000528455 PRR15LQ9BU68 103 aa3.35□□□□□ -1.87
CD44-228ENST00000528455 M0QZ58 72 aa3.34□□□□□ -1.87
CD44-228ENST00000528455 SPRR2GQ9BYE4 73 aa3.33□□□□□ -1.88
CD44-228ENST00000528455 A0A1B0GU33 70 aa3.32□□□□□ -1.88
CD44-228ENST00000528455 R4GN34 69 aa3.32□□□□□ -1.88
CD44-228ENST00000528455 SYNE2Q8WXH0 6885 aaKnown RBP3.31□□□□□ -1.88
CD44-228ENST00000528455 KRTAP9-6A8MVA2 160 aa3.3□□□□□ -1.88
CD44-228ENST00000528455 Q5VV11 94 aa3.28□□□□□ -1.88
CD44-228ENST00000528455 UQCR11O14957 56 aa3.26□□□□□ -1.89
CD44-228ENST00000528455 PSPHP1O15172 72 aa3.26□□□□□ -1.89
CD44-228ENST00000528455 KRTAP19-8Q3LI54 63 aa3.26□□□□□ -1.89
CD44-228ENST00000528455 MACF1Q9UPN3 7388 aaKnown RBP3.25□□□□□ -1.89
CD44-228ENST00000528455 KRTAP19-6Q3LI70 58 aa3.24□□□□□ -1.89
CD44-228ENST00000528455 KRTAP13-4Q3LI77 160 aa3.24□□□□□ -1.89
CD44-228ENST00000528455 A6NN06 94 aa3.23□□□□□ -1.89
CD44-228ENST00000528455 SPATA8Q6RVD6 105 aa3.23□□□□□ -1.89
CD44-228ENST00000528455 A8MU10 97 aa3.21□□□□□ -1.9
CD44-228ENST00000528455 LINC01554Q52M75 96 aa3.21□□□□□ -1.9
CD44-228ENST00000528455 PLAC4Q8WY50 150 aa3.2□□□□□ -1.9
CD44-228ENST00000528455 MT1BP07438 61 aa3.19□□□□□ -1.9
CD44-228ENST00000528455 MIR22HGQ0VDD5 57 aa3.19□□□□□ -1.9
CD44-228ENST00000528455 A6NED7 52 aa3.17□□□□□ -1.9
CD44-228ENST00000528455 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
CD44-228ENST00000528455 A0A0D9SG42 100 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms