RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MT1BP07438 61 aa6.57□□□□□ -1.36
CPSF1-201ENST00000526271 CYP4F30PQ9H0H9 118 aa6.57□□□□□ -1.36
CPSF1-201ENST00000526271 LOC101927531A0A1B0GV80 90 aa6.56□□□□□ -1.36
CPSF1-201ENST00000526271 TRAV7A0A075B6U4 112 aa6.55□□□□□ -1.36
CPSF1-201ENST00000526271 H1FX-AS1Q4G0G2 97 aa6.55□□□□□ -1.36
CPSF1-201ENST00000526271 MP68P56378 58 aa6.54□□□□□ -1.36
CPSF1-201ENST00000526271 H3BPC8 53 aa6.53□□□□□ -1.36
CPSF1-201ENST00000526271 C1orf64Q8NEQ6 169 aa6.53□□□□□ -1.36
CPSF1-201ENST00000526271 LINC00208Q96KT6 92 aa6.52□□□□□ -1.37
CPSF1-201ENST00000526271 KRTAP3-3Q9BYR6 98 aa6.52□□□□□ -1.37
CPSF1-201ENST00000526271 KRTAP3-2Q9BYR7 98 aa6.52□□□□□ -1.37
CPSF1-201ENST00000526271 KRTAP20-1Q3LI63 56 aa6.49□□□□□ -1.37
CPSF1-201ENST00000526271 C4orf26Q17RF5 130 aa6.48□□□□□ -1.37
CPSF1-201ENST00000526271 SERP2Q8N6R1 65 aa6.47□□□□□ -1.37
CPSF1-201ENST00000526271 KMT2DO14686 5537 aa6.47□□□□□ -1.37
CPSF1-201ENST00000526271 KRTAP5-9P26371 169 aa6.46□□□□□ -1.38
CPSF1-201ENST00000526271 A6NN06 94 aa6.45□□□□□ -1.38
CPSF1-201ENST00000526271 KLKP1Q107X0 134 aa6.45□□□□□ -1.38
CPSF1-201ENST00000526271 KRTAP19-8Q3LI54 63 aa6.45□□□□□ -1.38
CPSF1-201ENST00000526271 KRTAP3-1Q9BYR8 98 aa6.45□□□□□ -1.38
CPSF1-201ENST00000526271 KRTAP10-5P60370 271 aa6.42□□□□□ -1.38
CPSF1-201ENST00000526271 MDN1Q9NU22 5596 aa6.42□□□□□ -1.38
CPSF1-201ENST00000526271 SPRR2GQ9BYE4 73 aa6.4□□□□□ -1.38
CPSF1-201ENST00000526271 COX7CP15954 63 aa6.39□□□□□ -1.39
CPSF1-201ENST00000526271 C20orf197Q8N268 126 aa6.36□□□□□ -1.39
CPSF1-201ENST00000526271 SNURFQ9Y675 71 aa6.36□□□□□ -1.39
CPSF1-201ENST00000526271 Q5VV11 94 aa6.35□□□□□ -1.39
CPSF1-201ENST00000526271 ANAPC13Q9BS18 74 aa6.33□□□□□ -1.4
CPSF1-201ENST00000526271 A8MUN3 132 aa6.32□□□□□ -1.4
CPSF1-201ENST00000526271 S4R3F8 94 aa6.31□□□□□ -1.4
CPSF1-201ENST00000526271 CSAG1Q6PB30 78 aa6.28□□□□□ -1.4
CPSF1-201ENST00000526271 DMAC1Q96GE9 116 aa6.27□□□□□ -1.41
CPSF1-201ENST00000526271 LCA10Q71F78 164 aa6.26□□□□□ -1.41
CPSF1-201ENST00000526271 PCP4P48539 62 aa6.25□□□□□ -1.41
CPSF1-201ENST00000526271 SPANXA2-OT1Q8N9U9 137 aa6.25□□□□□ -1.41
CPSF1-201ENST00000526271 NDUFC1O43677 76 aa6.23□□□□□ -1.41
CPSF1-201ENST00000526271 KRTAP2-3P0C7H8 128 aa6.22□□□□□ -1.41
CPSF1-201ENST00000526271 KRTAP2-4Q9BYR9 128 aa6.22□□□□□ -1.41
CPSF1-201ENST00000526271 CYSTM1Q9H1C7 97 aa6.22□□□□□ -1.41
CPSF1-201ENST00000526271 CCDC179H3BU77 68 aa6.21□□□□□ -1.42
CPSF1-201ENST00000526271 H7BZZ5 65 aa6.2□□□□□ -1.42
CPSF1-201ENST00000526271 ACYP2P14621 99 aa6.2□□□□□ -1.42
CPSF1-201ENST00000526271 SPRR2FQ96RM1 72 aa6.12□□□□□ -1.43
CPSF1-201ENST00000526271 SPRR2EP22531 72 aa6.09□□□□□ -1.43
CPSF1-201ENST00000526271 SPRR2BP35325 72 aa6.09□□□□□ -1.43
CPSF1-201ENST00000526271 SPRR2AP35326 72 aa6.09□□□□□ -1.43
CPSF1-201ENST00000526271 CRIPTQ9P021 101 aa6.09□□□□□ -1.43
CPSF1-201ENST00000526271 MT1XP80297 61 aa6.06□□□□□ -1.44
CPSF1-201ENST00000526271 LCE1AQ5T7P2 110 aa6.06□□□□□ -1.44
CPSF1-201ENST00000526271 H0YAA0 97 aa6.04□□□□□ -1.44
CPSF1-201ENST00000526271 CHKB-CPT1BH3BT56 60 aa6.04□□□□□ -1.44
CPSF1-201ENST00000526271 COA5Q86WW8 74 aa6.02□□□□□ -1.45
CPSF1-201ENST00000526271 SPTSSBQ8NFR3 76 aa6.02□□□□□ -1.45
CPSF1-201ENST00000526271 KRTAP2-2Q9BYT5 123 aa6.01□□□□□ -1.45
CPSF1-201ENST00000526271 KRTAP2-1Q9BYU5 128 aa6.01□□□□□ -1.45
CPSF1-201ENST00000526271 ATP5EP56381 51 aaPredicted RBP6□□□□□ -1.45
CPSF1-201ENST00000526271 TMEM258P61165 79 aa5.99□□□□□ -1.45
CPSF1-201ENST00000526271 KRTAP4-8A0A0G2JLE6 195 aa5.95□□□□□ -1.46
CPSF1-201ENST00000526271 ADM2Q7Z4H4 148 aa5.95□□□□□ -1.46
CPSF1-201ENST00000526271 KRTAP4-8Q9BYQ9 185 aa5.95□□□□□ -1.46
CPSF1-201ENST00000526271 KRTAP8-1Q8IUC2 63 aa5.94□□□□□ -1.46
CPSF1-201ENST00000526271 SPRR2DP22532 72 aa5.89□□□□□ -1.47
CPSF1-201ENST00000526271 KRTAP12-2P59991 146 aa5.89□□□□□ -1.47
CPSF1-201ENST00000526271 P0C880 135 aa5.88□□□□□ -1.47
CPSF1-201ENST00000526271 PRO2289Q9P1D8 64 aa5.87□□□□□ -1.47
CPSF1-201ENST00000526271 PLAC4Q8WY50 150 aa5.83□□□□□ -1.48
CPSF1-201ENST00000526271 SERP1Q9Y6X1 66 aa5.81□□□□□ -1.48
CPSF1-201ENST00000526271 R4GN34 69 aa5.8□□□□□ -1.48
CPSF1-201ENST00000526271 KRTAP10-7P60409 375 aaPredicted RBP5.78□□□□□ -1.48
CPSF1-201ENST00000526271 LCE3BQ5TA77 95 aa5.78□□□□□ -1.48
CPSF1-201ENST00000526271 SEC61GP60059 68 aa5.76□□□□□ -1.49
CPSF1-201ENST00000526271 M0QZ58 72 aa5.73□□□□□ -1.49
CPSF1-201ENST00000526271 LINC01558Q9Y6Z2 57 aa5.72□□□□□ -1.49
CPSF1-201ENST00000526271 KRTAP10-12P60413 245 aa5.71□□□□□ -1.5
CPSF1-201ENST00000526271 A0A1B0GU69 56 aa5.7□□□□□ -1.5
CPSF1-201ENST00000526271 GPR98Q8WXG9 6306 aa5.69□□□□□ -1.5
CPSF1-201ENST00000526271 RPS28P62857 69 aaKnown RBP5.68□□□□□ -1.5
CPSF1-201ENST00000526271 LINC01554Q52M75 96 aa5.66□□□□□ -1.5
CPSF1-201ENST00000526271 A0A1B0GU33 70 aa5.65□□□□□ -1.5
CPSF1-201ENST00000526271 KRTAP13-4Q3LI77 160 aa5.65□□□□□ -1.5
CPSF1-201ENST00000526271 PRR15LQ9BU68 103 aa5.63□□□□□ -1.51
CPSF1-201ENST00000526271 SMIM26A0A096LP01 95 aa5.61□□□□□ -1.51
CPSF1-201ENST00000526271 Q1T7F1 81 aa5.61□□□□□ -1.51
CPSF1-201ENST00000526271 V9GYY9 64 aa5.6□□□□□ -1.51
CPSF1-201ENST00000526271 SPATA8Q6RVD6 105 aa5.57□□□□□ -1.52
CPSF1-201ENST00000526271 DSTQ03001 7570 aaKnown RBP5.57□□□□□ -1.52
CPSF1-201ENST00000526271 SVIPQ8NHG7 77 aa5.56□□□□□ -1.52
CPSF1-201ENST00000526271 KRTAP4-9Q9BYQ8 210 aa5.55□□□□□ -1.52
CPSF1-201ENST00000526271 A0A0D9SG42 100 aa5.48□□□□□ -1.53
CPSF1-201ENST00000526271 UQCR11O14957 56 aa5.48□□□□□ -1.53
CPSF1-201ENST00000526271 PSPHP1O15172 72 aa5.48□□□□□ -1.53
CPSF1-201ENST00000526271 LCE5AQ5TCM9 118 aa5.46□□□□□ -1.54
CPSF1-201ENST00000526271 A8MU10 97 aa5.44□□□□□ -1.54
CPSF1-201ENST00000526271 KRTAP19-7Q3SYF9 63 aa5.44□□□□□ -1.54
CPSF1-201ENST00000526271 KRTAP12-1P59990 96 aa5.43□□□□□ -1.54
CPSF1-201ENST00000526271 MIR22HGQ0VDD5 57 aa5.38□□□□□ -1.55
CPSF1-201ENST00000526271 SPINT4Q6UDR6 99 aa5.38□□□□□ -1.55
CPSF1-201ENST00000526271 MT1EP04732 61 aa5.37□□□□□ -1.55
CPSF1-201ENST00000526271 LCE1DQ5T752 114 aa5.36□□□□□ -1.55
CPSF1-201ENST00000526271 KRTAP19-3Q7Z4W3 81 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 144.5 ms