RNA–Protein interactions for RNA: ENST00000515011.5

PDE4D-223, Transcript of phosphodiesterase 4D, humanhuman

TSL 1 (best)

Gene PDE4D, Length 2,175 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE4D-223ENST00000515011 LCA10Q71F78 164 aa11.89□□□□□ -0.51
PDE4D-223ENST00000515011 CDC42SE1Q9NRR8 79 aa11.86□□□□□ -0.51
PDE4D-223ENST00000515011 SEC61GP60059 68 aa11.7□□□□□ -0.54
PDE4D-223ENST00000515011 HERC1Q15751 4861 aa11.68□□□□□ -0.54
PDE4D-223ENST00000515011 J3QL48 77 aa11.67□□□□□ -0.54
PDE4D-223ENST00000515011 UQCR11O14957 56 aa11.65□□□□□ -0.54
PDE4D-223ENST00000515011 SPATA8Q6RVD6 105 aa11.62□□□□□ -0.55
PDE4D-223ENST00000515011 LRP2P98164 4655 aa11.61□□□□□ -0.55
PDE4D-223ENST00000515011 MIR22HGQ0VDD5 57 aa11.58□□□□□ -0.56
PDE4D-223ENST00000515011 LPAP08519 4548 aa11.56□□□□□ -0.56
PDE4D-223ENST00000515011 PMAIP1Q13794 54 aa11.56□□□□□ -0.56
PDE4D-223ENST00000515011 KRTAP3-3Q9BYR6 98 aa11.56□□□□□ -0.56
PDE4D-223ENST00000515011 S4R3F8 94 aa11.53□□□□□ -0.56
PDE4D-223ENST00000515011 H1FX-AS1Q4G0G2 97 aa11.5□□□□□ -0.57
PDE4D-223ENST00000515011 A6NN06 94 aa11.46□□□□□ -0.57
PDE4D-223ENST00000515011 RBM12B-AS1Q9P1G2 102 aa11.44□□□□□ -0.58
PDE4D-223ENST00000515011 SEC61BP60468 96 aaKnown RBP11.44□□□□□ -0.58
PDE4D-223ENST00000515011 A0A1B0GU33 70 aa11.43□□□□□ -0.58
PDE4D-223ENST00000515011 H0YAA0 97 aa11.37□□□□□ -0.59
PDE4D-223ENST00000515011 KRTAP10-6P60371 365 aaPredicted RBP11.3□□□□□ -0.6
PDE4D-223ENST00000515011 HMCN2Q8NDA2 5059 aa11.29□□□□□ -0.6
PDE4D-223ENST00000515011 KRTAP3-2Q9BYR7 98 aa11.27□□□□□ -0.6
PDE4D-223ENST00000515011 KTN1-AS1Q86SY8 53 aa11.24□□□□□ -0.61
PDE4D-223ENST00000515011 KRTAP4-1Q9BYQ7 146 aa11.23□□□□□ -0.61
PDE4D-223ENST00000515011 MUC17Q685J3 4493 aa11.21□□□□□ -0.61
PDE4D-223ENST00000515011 CSAG1Q6PB30 78 aa11.2□□□□□ -0.62
PDE4D-223ENST00000515011 P0C880 135 aa11.13□□□□□ -0.63
PDE4D-223ENST00000515011 ADM2Q7Z4H4 148 aa11.1□□□□□ -0.63
PDE4D-223ENST00000515011 KRTAP13-4Q3LI77 160 aa11.07□□□□□ -0.64
PDE4D-223ENST00000515011 KRTAP19-2Q3LHN2 52 aa11.02□□□□□ -0.65
PDE4D-223ENST00000515011 UBR4Q5T4S7 5183 aa11.01□□□□□ -0.65
PDE4D-223ENST00000515011 K7ERS5 55 aa10.93□□□□□ -0.66
PDE4D-223ENST00000515011 A0A0D9SG42 100 aa10.89□□□□□ -0.67
PDE4D-223ENST00000515011 M0QZ58 72 aa10.84□□□□□ -0.67
PDE4D-223ENST00000515011 MUC2Q02817 5179 aa10.84□□□□□ -0.67
PDE4D-223ENST00000515011 RNF213Q63HN8 5207 aa10.82□□□□□ -0.68
PDE4D-223ENST00000515011 PRAC1Q96KF2 57 aa10.82□□□□□ -0.68
PDE4D-223ENST00000515011 KRTAP12-2P59991 146 aa10.67□□□□□ -0.7
PDE4D-223ENST00000515011 FLGP20930 4061 aaPredicted RBP10.67□□□□□ -0.7
PDE4D-223ENST00000515011 KRTAP12-1P59990 96 aa10.66□□□□□ -0.7
PDE4D-223ENST00000515011 R4GN34 69 aa10.65□□□□□ -0.71
PDE4D-223ENST00000515011 LORP23490 312 aaPredicted RBP10.59□□□□□ -0.71
PDE4D-223ENST00000515011 ROMO1P60602 79 aa10.59□□□□□ -0.71
PDE4D-223ENST00000515011 SPINT4Q6UDR6 99 aa10.58□□□□□ -0.72
PDE4D-223ENST00000515011 LCE2CQ5TA81 110 aa10.55□□□□□ -0.72
PDE4D-223ENST00000515011 LINC01554Q52M75 96 aa10.5□□□□□ -0.73
PDE4D-223ENST00000515011 KRTAP25-1Q3LHN0 102 aa10.43□□□□□ -0.74
PDE4D-223ENST00000515011 FAT4Q6V0I7 4981 aa10.36□□□□□ -0.75
PDE4D-223ENST00000515011 CRIPTQ9P021 101 aa10.35□□□□□ -0.75
PDE4D-223ENST00000515011 MT1HP80294 61 aa10.29□□□□□ -0.76
PDE4D-223ENST00000515011 M0R2T5 61 aa10.21□□□□□ -0.77
PDE4D-223ENST00000515011 C10orf95Q9H7T3 257 aa10.11□□□□□ -0.79
PDE4D-223ENST00000515011 SPRR2GQ9BYE4 73 aa10.05□□□□□ -0.8
PDE4D-223ENST00000515011 CAMK2N1Q7Z7J9 78 aa10.03□□□□□ -0.8
PDE4D-223ENST00000515011 MT2AP02795 61 aa10.01□□□□□ -0.81
PDE4D-223ENST00000515011 KRTAP19-1Q8IUB9 90 aa9.99□□□□□ -0.81
PDE4D-223ENST00000515011 KRTAP9-8Q9BYQ0 159 aa9.99□□□□□ -0.81
PDE4D-223ENST00000515011 MT1FP04733 61 aa9.97□□□□□ -0.81
PDE4D-223ENST00000515011 KRTAP10-10P60014 251 aa9.92□□□□□ -0.82
PDE4D-223ENST00000515011 LCE2AQ5TA79 106 aaPredicted RBP9.85□□□□□ -0.83
PDE4D-223ENST00000515011 PLAC4Q8WY50 150 aa9.79□□□□□ -0.84
PDE4D-223ENST00000515011 KRTAP19-8Q3LI54 63 aa9.71□□□□□ -0.86
PDE4D-223ENST00000515011 TNP1P09430 55 aa9.63□□□□□ -0.87
PDE4D-223ENST00000515011 PP632Q6XCG6 107 aa9.61□□□□□ -0.87
PDE4D-223ENST00000515011 KRTAP9-3Q9BYQ3 159 aa9.6□□□□□ -0.87
PDE4D-223ENST00000515011 MT1BP07438 61 aa9.56□□□□□ -0.88
PDE4D-223ENST00000515011 KRTAP23-1A1A580 65 aa9.48□□□□□ -0.89
PDE4D-223ENST00000515011 KRTAP15-1Q3LI76 137 aa9.38□□□□□ -0.91
PDE4D-223ENST00000515011 KRTAP10-5P60370 271 aa9.36□□□□□ -0.91
PDE4D-223ENST00000515011 MT1XP80297 61 aa9.36□□□□□ -0.91
PDE4D-223ENST00000515011 LCE2BO14633 110 aa9.27□□□□□ -0.93
PDE4D-223ENST00000515011 FSIP2Q5CZC0 6907 aa9.26□□□□□ -0.93
PDE4D-223ENST00000515011 LCE3AQ5TA76 89 aa9.17□□□□□ -0.94
PDE4D-223ENST00000515011 PRO2289Q9P1D8 64 aa9.13□□□□□ -0.95
PDE4D-223ENST00000515011 KRTAP9-2Q9BYQ4 174 aa9.12□□□□□ -0.95
PDE4D-223ENST00000515011 USH2AO75445 5202 aa9.08□□□□□ -0.96
PDE4D-223ENST00000515011 LCE2DQ5TA82 110 aaPredicted RBP9.07□□□□□ -0.96
PDE4D-223ENST00000515011 KRTAP10-12P60413 245 aa9.02□□□□□ -0.97
PDE4D-223ENST00000515011 KRTAP10-7P60409 375 aaPredicted RBP9.02□□□□□ -0.97
PDE4D-223ENST00000515011 KRTAP8-1Q8IUC2 63 aa8.99□□□□□ -0.97
PDE4D-223ENST00000515011 NDUFAF8A1L188 74 aa8.86□□□□□ -0.99
PDE4D-223ENST00000515011 SSPOA2VEC9 5147 aa8.86□□□□□ -0.99
PDE4D-223ENST00000515011 SPRR5A0A1B0GTR4 108 aa8.77□□□□□ -1.01
PDE4D-223ENST00000515011 KRTAP12-3P60328 96 aa8.77□□□□□ -1.01
PDE4D-223ENST00000515011 CRCT1Q9UGL9 99 aa8.69□□□□□ -1.02
PDE4D-223ENST00000515011 LUZP6Q538Z0 58 aa8.65□□□□□ -1.02
PDE4D-223ENST00000515011 H3BS24 57 aa8.63□□□□□ -1.03
PDE4D-223ENST00000515011 KRTAP9-6A0A140TA67 174 aa8.57□□□□□ -1.04
PDE4D-223ENST00000515011 KRTAP19-5Q3LI72 72 aa8.56□□□□□ -1.04
PDE4D-223ENST00000515011 KRTAP19-6Q3LI70 58 aa8.55□□□□□ -1.04
PDE4D-223ENST00000515011 KRTAP4-8A0A0G2JLE6 195 aa8.54□□□□□ -1.04
PDE4D-223ENST00000515011 KRTAP4-8Q9BYQ9 185 aa8.54□□□□□ -1.04
PDE4D-223ENST00000515011 FCGBPQ9Y6R7 5405 aaPredicted RBP8.53□□□□□ -1.04
PDE4D-223ENST00000515011 KMT2DO14686 5537 aa8.41□□□□□ -1.06
PDE4D-223ENST00000515011 KRTAP19-7Q3SYF9 63 aa8.35□□□□□ -1.07
PDE4D-223ENST00000515011 MACF1Q9UPN3 7388 aaKnown RBP8.29□□□□□ -1.08
PDE4D-223ENST00000515011 LCE3CQ5T5A8 94 aa8.23□□□□□ -1.09
PDE4D-223ENST00000515011 SYNE2Q8WXH0 6885 aaKnown RBP8.19□□□□□ -1.1
PDE4D-223ENST00000515011 MT1EP04732 61 aa8.16□□□□□ -1.1
PDE4D-223ENST00000515011 KRTAP19-4Q3LI73 84 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms