RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CSAG1Q6PB30 78 aa4.46□□□□□ -1.7
RNF4-221ENST00000513643 ATOX1O00244 68 aa4.45□□□□□ -1.7
RNF4-221ENST00000513643 LCE3BQ5TA77 95 aa4.45□□□□□ -1.7
RNF4-221ENST00000513643 OCR1Q9BZK8 76 aa4.45□□□□□ -1.7
RNF4-221ENST00000513643 H0Y9P7 68 aa4.44□□□□□ -1.7
RNF4-221ENST00000513643 KRTAP4-12Q9BQ66 201 aa4.44□□□□□ -1.7
RNF4-221ENST00000513643 MACF1Q9UPN3 7388 aaKnown RBP4.43□□□□□ -1.7
RNF4-221ENST00000513643 J3QR89 54 aa4.41□□□□□ -1.7
RNF4-221ENST00000513643 SPRR2GQ9BYE4 73 aa4.41□□□□□ -1.7
RNF4-221ENST00000513643 SYNE2Q8WXH0 6885 aaKnown RBP4.41□□□□□ -1.7
RNF4-221ENST00000513643 KLKP1Q107X0 134 aa4.39□□□□□ -1.71
RNF4-221ENST00000513643 KRTAP9-9Q9BYP9 154 aa4.39□□□□□ -1.71
RNF4-221ENST00000513643 KRTAP9-4Q9BYQ2 154 aa4.39□□□□□ -1.71
RNF4-221ENST00000513643 KRTAP19-8Q3LI54 63 aa4.38□□□□□ -1.71
RNF4-221ENST00000513643 A8MUN3 132 aa4.37□□□□□ -1.71
RNF4-221ENST00000513643 MT1BP07438 61 aa4.37□□□□□ -1.71
RNF4-221ENST00000513643 LINC00208Q96KT6 92 aa4.37□□□□□ -1.71
RNF4-221ENST00000513643 KRTAP9-7A8MTY7 169 aa4.35□□□□□ -1.71
RNF4-221ENST00000513643 H0YAA0 97 aa4.35□□□□□ -1.71
RNF4-221ENST00000513643 H3BPC8 53 aa4.35□□□□□ -1.71
RNF4-221ENST00000513643 MP68P56378 58 aa4.35□□□□□ -1.71
RNF4-221ENST00000513643 IMUPQ9GZP8 106 aa4.34□□□□□ -1.71
RNF4-221ENST00000513643 FAM236AA0A1B0GUQ0 79 aa4.33□□□□□ -1.72
RNF4-221ENST00000513643 FAM236BA0A1B0GV22 79 aa4.33□□□□□ -1.72
RNF4-221ENST00000513643 KRTAP4-8A0A0G2JLE6 195 aa4.32□□□□□ -1.72
RNF4-221ENST00000513643 CRIPTQ9P021 101 aa4.32□□□□□ -1.72
RNF4-221ENST00000513643 NDUFC1O43677 76 aa4.31□□□□□ -1.72
RNF4-221ENST00000513643 MT-ATP8P03928 68 aa4.3□□□□□ -1.72
RNF4-221ENST00000513643 K7ERU9 68 aa4.28□□□□□ -1.72
RNF4-221ENST00000513643 Q5VV11 94 aa4.28□□□□□ -1.72
RNF4-221ENST00000513643 SCGB1A1P11684 91 aa4.27□□□□□ -1.73
RNF4-221ENST00000513643 DMAC1Q96GE9 116 aa4.27□□□□□ -1.73
RNF4-221ENST00000513643 KRTAP10-5P60370 271 aa4.24□□□□□ -1.73
RNF4-221ENST00000513643 TRAV7A0A075B6U4 112 aa4.23□□□□□ -1.73
RNF4-221ENST00000513643 SMIM20Q8N5G0 67 aa4.23□□□□□ -1.73
RNF4-221ENST00000513643 ADM2Q7Z4H4 148 aa4.22□□□□□ -1.73
RNF4-221ENST00000513643 A6NN06 94 aa4.21□□□□□ -1.74
RNF4-221ENST00000513643 KRTAP6-3Q3LI67 103 aa4.21□□□□□ -1.74
RNF4-221ENST00000513643 MUC12Q9UKN1 5478 aa4.17□□□□□ -1.74
RNF4-221ENST00000513643 P0C880 135 aa4.17□□□□□ -1.74
RNF4-221ENST00000513643 KRTAP4-7Q9BYR0 210 aa4.17□□□□□ -1.74
RNF4-221ENST00000513643 NEBP20929 6669 aa4.17□□□□□ -1.74
RNF4-221ENST00000513643 SEC61GP60059 68 aa4.16□□□□□ -1.74
RNF4-221ENST00000513643 KRTAP23-1A1A580 65 aa4.15□□□□□ -1.75
RNF4-221ENST00000513643 LCE1DQ5T752 114 aa4.15□□□□□ -1.75
RNF4-221ENST00000513643 ACYP2P14621 99 aa4.14□□□□□ -1.75
RNF4-221ENST00000513643 KMT2DO14686 5537 aa4.12□□□□□ -1.75
RNF4-221ENST00000513643 C20orf197Q8N268 126 aa4.11□□□□□ -1.75
RNF4-221ENST00000513643 SERP2Q8N6R1 65 aa4.11□□□□□ -1.75
RNF4-221ENST00000513643 MDN1Q9NU22 5596 aa4.1□□□□□ -1.75
RNF4-221ENST00000513643 MT1XP80297 61 aa4.1□□□□□ -1.75
RNF4-221ENST00000513643 SPANXA2-OT1Q8N9U9 137 aa4.1□□□□□ -1.75
RNF4-221ENST00000513643 SNURFQ9Y675 71 aa4.1□□□□□ -1.75
RNF4-221ENST00000513643 R4GN34 69 aa4.09□□□□□ -1.75
RNF4-221ENST00000513643 KRTAP5-9P26371 169 aa4.07□□□□□ -1.76
RNF4-221ENST00000513643 M0QZ58 72 aa4.06□□□□□ -1.76
RNF4-221ENST00000513643 KRTAP4-9Q9BYQ8 210 aa4.05□□□□□ -1.76
RNF4-221ENST00000513643 SPTSSBQ8NFR3 76 aa4.04□□□□□ -1.76
RNF4-221ENST00000513643 PLAC4Q8WY50 150 aa4.04□□□□□ -1.76
RNF4-221ENST00000513643 PRO2289Q9P1D8 64 aa4.03□□□□□ -1.76
RNF4-221ENST00000513643 KRTAP4-2Q9BYR5 136 aa4.02□□□□□ -1.77
RNF4-221ENST00000513643 KRTAP12-2P59991 146 aa4.01□□□□□ -1.77
RNF4-221ENST00000513643 CHKB-CPT1BH3BT56 60 aa4□□□□□ -1.77
RNF4-221ENST00000513643 COX7CP15954 63 aa3.99□□□□□ -1.77
RNF4-221ENST00000513643 CYSTM1Q9H1C7 97 aa3.97□□□□□ -1.77
RNF4-221ENST00000513643 LINC01554Q52M75 96 aa3.96□□□□□ -1.78
RNF4-221ENST00000513643 H7BZZ5 65 aa3.95□□□□□ -1.78
RNF4-221ENST00000513643 KRTAP13-4Q3LI77 160 aa3.94□□□□□ -1.78
RNF4-221ENST00000513643 LCE4AQ5TA78 99 aa3.94□□□□□ -1.78
RNF4-221ENST00000513643 COA5Q86WW8 74 aa3.94□□□□□ -1.78
RNF4-221ENST00000513643 KRTAP10-12P60413 245 aa3.91□□□□□ -1.78
RNF4-221ENST00000513643 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.79
RNF4-221ENST00000513643 KRTAP4-11Q9BYQ6 195 aa3.9□□□□□ -1.79
RNF4-221ENST00000513643 KRTAP8-1Q8IUC2 63 aa3.87□□□□□ -1.79
RNF4-221ENST00000513643 SPRR2FQ96RM1 72 aa3.86□□□□□ -1.79
RNF4-221ENST00000513643 CCDC179H3BU77 68 aa3.83□□□□□ -1.8
RNF4-221ENST00000513643 ANAPC13Q9BS18 74 aa3.83□□□□□ -1.8
RNF4-221ENST00000513643 LCE1AQ5T7P2 110 aa3.82□□□□□ -1.8
RNF4-221ENST00000513643 KRTAP20-1Q3LI63 56 aa3.8□□□□□ -1.8
RNF4-221ENST00000513643 SERP1Q9Y6X1 66 aa3.8□□□□□ -1.8
RNF4-221ENST00000513643 A0A1B0GU33 70 aa3.79□□□□□ -1.8
RNF4-221ENST00000513643 SPRR2EP22531 72 aa3.79□□□□□ -1.8
RNF4-221ENST00000513643 SPRR2BP35325 72 aa3.79□□□□□ -1.8
RNF4-221ENST00000513643 SPRR2AP35326 72 aa3.79□□□□□ -1.8
RNF4-221ENST00000513643 V9GYY9 64 aa3.78□□□□□ -1.8
RNF4-221ENST00000513643 SPATA8Q6RVD6 105 aa3.77□□□□□ -1.81
RNF4-221ENST00000513643 KRTAP2-3P0C7H8 128 aa3.76□□□□□ -1.81
RNF4-221ENST00000513643 KRTAP2-4Q9BYR9 128 aa3.76□□□□□ -1.81
RNF4-221ENST00000513643 KRTAP12-1P59990 96 aa3.75□□□□□ -1.81
RNF4-221ENST00000513643 LCE5AQ5TCM9 118 aa3.74□□□□□ -1.81
RNF4-221ENST00000513643 CAMK2N1Q7Z7J9 78 aa3.74□□□□□ -1.81
RNF4-221ENST00000513643 A0A0D9SG42 100 aa3.72□□□□□ -1.81
RNF4-221ENST00000513643 A0A1B0GU69 56 aa3.71□□□□□ -1.82
RNF4-221ENST00000513643 ATP5EP56381 51 aaPredicted RBP3.71□□□□□ -1.82
RNF4-221ENST00000513643 KRTAP19-7Q3SYF9 63 aa3.69□□□□□ -1.82
RNF4-221ENST00000513643 PRAC1Q96KF2 57 aa3.69□□□□□ -1.82
RNF4-221ENST00000513643 SPINT4Q6UDR6 99 aa3.67□□□□□ -1.82
RNF4-221ENST00000513643 SMIM26A0A096LP01 95 aa3.66□□□□□ -1.82
RNF4-221ENST00000513643 SPRR2DP22532 72 aa3.66□□□□□ -1.82
RNF4-221ENST00000513643 KRTAP5-3Q6L8H2 238 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms