RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 UQCR11O14957 56 aa8.66□□□□□ -1.02
SQSTM1-213ENST00000510187 SEC61GP60059 68 aa8.66□□□□□ -1.02
SQSTM1-213ENST00000510187 C9orf92A6NGG3 77 aa8.62□□□□□ -1.03
SQSTM1-213ENST00000510187 MIR22HGQ0VDD5 57 aa8.62□□□□□ -1.03
SQSTM1-213ENST00000510187 TPRXLQ17RH7 258 aa8.54□□□□□ -1.04
SQSTM1-213ENST00000510187 HERC1Q15751 4861 aa8.53□□□□□ -1.04
SQSTM1-213ENST00000510187 RBM12B-AS1Q9P1G2 102 aa8.5□□□□□ -1.05
SQSTM1-213ENST00000510187 KRTAP3-1Q9BYR8 98 aa8.48□□□□□ -1.05
SQSTM1-213ENST00000510187 XP32Q5T750 250 aa8.47□□□□□ -1.05
SQSTM1-213ENST00000510187 LPAP08519 4548 aa8.45□□□□□ -1.06
SQSTM1-213ENST00000510187 COX6B2Q6YFQ2 88 aa8.42□□□□□ -1.06
SQSTM1-213ENST00000510187 RPL37P61927 97 aaKnown RBP8.38□□□□□ -1.07
SQSTM1-213ENST00000510187 HMCN2Q8NDA2 5059 aa8.37□□□□□ -1.07
SQSTM1-213ENST00000510187 LRP2P98164 4655 aa8.35□□□□□ -1.07
SQSTM1-213ENST00000510187 A0A1B0GU33 70 aa8.33□□□□□ -1.08
SQSTM1-213ENST00000510187 H0YAA0 97 aa8.33□□□□□ -1.08
SQSTM1-213ENST00000510187 H1FX-AS1Q4G0G2 97 aa8.32□□□□□ -1.08
SQSTM1-213ENST00000510187 PRAC1Q96KF2 57 aa8.3□□□□□ -1.08
SQSTM1-213ENST00000510187 ADM2Q7Z4H4 148 aa8.27□□□□□ -1.09
SQSTM1-213ENST00000510187 SEC61BP60468 96 aaKnown RBP8.26□□□□□ -1.09
SQSTM1-213ENST00000510187 KRTAP3-3Q9BYR6 98 aa8.14□□□□□ -1.11
SQSTM1-213ENST00000510187 MUC17Q685J3 4493 aa8.12□□□□□ -1.11
SQSTM1-213ENST00000510187 K7ERS5 55 aa8.12□□□□□ -1.11
SQSTM1-213ENST00000510187 LINC01554Q52M75 96 aa8.11□□□□□ -1.11
SQSTM1-213ENST00000510187 CSAG1Q6PB30 78 aa8.11□□□□□ -1.11
SQSTM1-213ENST00000510187 S4R3F8 94 aa8.11□□□□□ -1.11
SQSTM1-213ENST00000510187 KRTAP10-6P60371 365 aaPredicted RBP8.08□□□□□ -1.12
SQSTM1-213ENST00000510187 KRTAP4-1Q9BYQ7 146 aa8.08□□□□□ -1.12
SQSTM1-213ENST00000510187 UBR4Q5T4S7 5183 aa8.04□□□□□ -1.12
SQSTM1-213ENST00000510187 KRTAP3-2Q9BYR7 98 aa8.03□□□□□ -1.12
SQSTM1-213ENST00000510187 MUC2Q02817 5179 aa7.99□□□□□ -1.13
SQSTM1-213ENST00000510187 KRTAP25-1Q3LHN0 102 aa7.97□□□□□ -1.13
SQSTM1-213ENST00000510187 KRTAP13-4Q3LI77 160 aa7.94□□□□□ -1.14
SQSTM1-213ENST00000510187 ROMO1P60602 79 aa7.89□□□□□ -1.15
SQSTM1-213ENST00000510187 RNF213Q63HN8 5207 aa7.88□□□□□ -1.15
SQSTM1-213ENST00000510187 P0C880 135 aa7.87□□□□□ -1.15
SQSTM1-213ENST00000510187 A0A0D9SG42 100 aa7.83□□□□□ -1.16
SQSTM1-213ENST00000510187 KRTAP19-2Q3LHN2 52 aa7.81□□□□□ -1.16
SQSTM1-213ENST00000510187 M0QZ58 72 aa7.75□□□□□ -1.17
SQSTM1-213ENST00000510187 LCE2CQ5TA81 110 aa7.72□□□□□ -1.17
SQSTM1-213ENST00000510187 KRTAP12-2P59991 146 aa7.69□□□□□ -1.18
SQSTM1-213ENST00000510187 KRTAP12-1P59990 96 aa7.69□□□□□ -1.18
SQSTM1-213ENST00000510187 CRIPTQ9P021 101 aa7.68□□□□□ -1.18
SQSTM1-213ENST00000510187 FAT4Q6V0I7 4981 aa7.66□□□□□ -1.18
SQSTM1-213ENST00000510187 FLGP20930 4061 aaPredicted RBP7.62□□□□□ -1.19
SQSTM1-213ENST00000510187 SPINT4Q6UDR6 99 aa7.61□□□□□ -1.19
SQSTM1-213ENST00000510187 MT1HP80294 61 aa7.59□□□□□ -1.19
SQSTM1-213ENST00000510187 M0R2T5 61 aa7.54□□□□□ -1.2
SQSTM1-213ENST00000510187 R4GN34 69 aa7.49□□□□□ -1.21
SQSTM1-213ENST00000510187 C10orf95Q9H7T3 257 aa7.47□□□□□ -1.21
SQSTM1-213ENST00000510187 LCE2AQ5TA79 106 aaPredicted RBP7.43□□□□□ -1.22
SQSTM1-213ENST00000510187 LORP23490 312 aaPredicted RBP7.32□□□□□ -1.24
SQSTM1-213ENST00000510187 KRTAP9-8Q9BYQ0 159 aa7.27□□□□□ -1.25
SQSTM1-213ENST00000510187 H3BS24 57 aa7.24□□□□□ -1.25
SQSTM1-213ENST00000510187 KRTAP15-1Q3LI76 137 aa7.24□□□□□ -1.25
SQSTM1-213ENST00000510187 MT2AP02795 61 aa7.24□□□□□ -1.25
SQSTM1-213ENST00000510187 MT1FP04733 61 aa7.19□□□□□ -1.26
SQSTM1-213ENST00000510187 KRTAP10-10P60014 251 aa7.19□□□□□ -1.26
SQSTM1-213ENST00000510187 CAMK2N1Q7Z7J9 78 aa7.1□□□□□ -1.27
SQSTM1-213ENST00000510187 PP632Q6XCG6 107 aa7.09□□□□□ -1.27
SQSTM1-213ENST00000510187 KRTAP9-3Q9BYQ3 159 aa7.01□□□□□ -1.29
SQSTM1-213ENST00000510187 KRTAP19-1Q8IUB9 90 aa6.98□□□□□ -1.29
SQSTM1-213ENST00000510187 SPRR2GQ9BYE4 73 aa6.98□□□□□ -1.29
SQSTM1-213ENST00000510187 NDUFAF8A1L188 74 aa6.96□□□□□ -1.29
SQSTM1-213ENST00000510187 PLAC4Q8WY50 150 aa6.95□□□□□ -1.3
SQSTM1-213ENST00000510187 KRTAP23-1A1A580 65 aa6.92□□□□□ -1.3
SQSTM1-213ENST00000510187 TNP1P09430 55 aa6.88□□□□□ -1.31
SQSTM1-213ENST00000510187 LCE2BO14633 110 aa6.86□□□□□ -1.31
SQSTM1-213ENST00000510187 KRTAP19-8Q3LI54 63 aa6.82□□□□□ -1.32
SQSTM1-213ENST00000510187 LCE2DQ5TA82 110 aaPredicted RBP6.82□□□□□ -1.32
SQSTM1-213ENST00000510187 MT1BP07438 61 aa6.76□□□□□ -1.33
SQSTM1-213ENST00000510187 KRTAP9-2Q9BYQ4 174 aa6.72□□□□□ -1.33
SQSTM1-213ENST00000510187 USH2AO75445 5202 aa6.68□□□□□ -1.34
SQSTM1-213ENST00000510187 LUZP6Q538Z0 58 aa6.64□□□□□ -1.35
SQSTM1-213ENST00000510187 FSIP2Q5CZC0 6907 aa6.62□□□□□ -1.35
SQSTM1-213ENST00000510187 SPRR5A0A1B0GTR4 108 aa6.56□□□□□ -1.36
SQSTM1-213ENST00000510187 SSPOA2VEC9 5147 aa6.51□□□□□ -1.37
SQSTM1-213ENST00000510187 MT1XP80297 61 aa6.5□□□□□ -1.37
SQSTM1-213ENST00000510187 KRTAP10-5P60370 271 aa6.48□□□□□ -1.37
SQSTM1-213ENST00000510187 KRTAP19-6Q3LI70 58 aa6.48□□□□□ -1.37
SQSTM1-213ENST00000510187 KRTAP9-6A0A140TA67 174 aa6.47□□□□□ -1.37
SQSTM1-213ENST00000510187 PRO2289Q9P1D8 64 aa6.47□□□□□ -1.37
SQSTM1-213ENST00000510187 LCE3AQ5TA76 89 aa6.46□□□□□ -1.38
SQSTM1-213ENST00000510187 CRCT1Q9UGL9 99 aa6.42□□□□□ -1.38
SQSTM1-213ENST00000510187 KRTAP8-1Q8IUC2 63 aa6.39□□□□□ -1.39
SQSTM1-213ENST00000510187 A0A0A0MQY5 61 aa6.29□□□□□ -1.4
SQSTM1-213ENST00000510187 KRTAP10-12P60413 245 aa6.28□□□□□ -1.4
SQSTM1-213ENST00000510187 FCGBPQ9Y6R7 5405 aaPredicted RBP6.27□□□□□ -1.41
SQSTM1-213ENST00000510187 KRTAP10-7P60409 375 aaPredicted RBP6.23□□□□□ -1.41
SQSTM1-213ENST00000510187 KRTAP12-3P60328 96 aa6.19□□□□□ -1.42
SQSTM1-213ENST00000510187 KRTAP4-8A0A0G2JLE6 195 aa6.05□□□□□ -1.44
SQSTM1-213ENST00000510187 KRTAP4-8Q9BYQ9 185 aa6.05□□□□□ -1.44
SQSTM1-213ENST00000510187 KMT2DO14686 5537 aa6.04□□□□□ -1.44
SQSTM1-213ENST00000510187 MACF1Q9UPN3 7388 aaKnown RBP6.03□□□□□ -1.44
SQSTM1-213ENST00000510187 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.95□□□□□ -1.46
SQSTM1-213ENST00000510187 KRTAP19-5Q3LI72 72 aa5.91□□□□□ -1.46
SQSTM1-213ENST00000510187 SYNE2Q8WXH0 6885 aaKnown RBP5.89□□□□□ -1.47
SQSTM1-213ENST00000510187 KRTAP9-7A8MTY7 169 aa5.83□□□□□ -1.48
SQSTM1-213ENST00000510187 LCE3CQ5T5A8 94 aa5.83□□□□□ -1.48
SQSTM1-213ENST00000510187 KRTAP19-7Q3SYF9 63 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms