RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 SPTSSBQ8NFR3 76 aa7.64□□□□□ -1.19
PHF3-209ENST00000509330 PCLOQ9Y6V0 5065 aa7.62□□□□□ -1.19
PHF3-209ENST00000509330 SVIPQ8NHG7 77 aa7.61□□□□□ -1.19
PHF3-209ENST00000509330 HERC1Q15751 4861 aa7.6□□□□□ -1.19
PHF3-209ENST00000509330 SEC61GP60059 68 aa7.55□□□□□ -1.2
PHF3-209ENST00000509330 MUC2Q02817 5179 aa7.55□□□□□ -1.2
PHF3-209ENST00000509330 CDC42SE1Q9NRR8 79 aa7.54□□□□□ -1.2
PHF3-209ENST00000509330 S4R3F8 94 aa7.5□□□□□ -1.21
PHF3-209ENST00000509330 KRTAP3-3Q9BYR6 98 aa7.49□□□□□ -1.21
PHF3-209ENST00000509330 UQCR11O14957 56 aa7.48□□□□□ -1.21
PHF3-209ENST00000509330 MIR22HGQ0VDD5 57 aa7.47□□□□□ -1.21
PHF3-209ENST00000509330 PMAIP1Q13794 54 aa7.47□□□□□ -1.21
PHF3-209ENST00000509330 RBM12B-AS1Q9P1G2 102 aa7.44□□□□□ -1.22
PHF3-209ENST00000509330 KRTAP4-1Q9BYQ7 146 aa7.44□□□□□ -1.22
PHF3-209ENST00000509330 H1FX-AS1Q4G0G2 97 aa7.43□□□□□ -1.22
PHF3-209ENST00000509330 MUC17Q685J3 4493 aa7.42□□□□□ -1.22
PHF3-209ENST00000509330 SEC61BP60468 96 aaKnown RBP7.42□□□□□ -1.22
PHF3-209ENST00000509330 SPATA8Q6RVD6 105 aa7.4□□□□□ -1.22
PHF3-209ENST00000509330 A0A1B0GU33 70 aa7.39□□□□□ -1.23
PHF3-209ENST00000509330 H0YAA0 97 aa7.36□□□□□ -1.23
PHF3-209ENST00000509330 HMCN2Q8NDA2 5059 aa7.36□□□□□ -1.23
PHF3-209ENST00000509330 P0C880 135 aa7.31□□□□□ -1.24
PHF3-209ENST00000509330 KRTAP10-6P60371 365 aaPredicted RBP7.3□□□□□ -1.24
PHF3-209ENST00000509330 A6NN06 94 aa7.29□□□□□ -1.24
PHF3-209ENST00000509330 ADM2Q7Z4H4 148 aa7.28□□□□□ -1.24
PHF3-209ENST00000509330 KRTAP3-2Q9BYR7 98 aa7.28□□□□□ -1.24
PHF3-209ENST00000509330 CSAG1Q6PB30 78 aa7.26□□□□□ -1.25
PHF3-209ENST00000509330 A0A0D9SG42 100 aa7.25□□□□□ -1.25
PHF3-209ENST00000509330 KRTAP13-4Q3LI77 160 aa7.25□□□□□ -1.25
PHF3-209ENST00000509330 RNF213Q63HN8 5207 aa7.22□□□□□ -1.25
PHF3-209ENST00000509330 UBR4Q5T4S7 5183 aa7.22□□□□□ -1.25
PHF3-209ENST00000509330 FAT4Q6V0I7 4981 aa7.2□□□□□ -1.26
PHF3-209ENST00000509330 KTN1-AS1Q86SY8 53 aa7.14□□□□□ -1.27
PHF3-209ENST00000509330 KRTAP19-2Q3LHN2 52 aa7.12□□□□□ -1.27
PHF3-209ENST00000509330 PRAC1Q96KF2 57 aa7.11□□□□□ -1.27
PHF3-209ENST00000509330 LINC01554Q52M75 96 aa7.06□□□□□ -1.28
PHF3-209ENST00000509330 LORP23490 312 aaPredicted RBP7.03□□□□□ -1.28
PHF3-209ENST00000509330 FLGP20930 4061 aaPredicted RBP7.02□□□□□ -1.29
PHF3-209ENST00000509330 K7ERS5 55 aa7.01□□□□□ -1.29
PHF3-209ENST00000509330 M0QZ58 72 aa7.01□□□□□ -1.29
PHF3-209ENST00000509330 SPINT4Q6UDR6 99 aa7.01□□□□□ -1.29
PHF3-209ENST00000509330 R4GN34 69 aa6.98□□□□□ -1.29
PHF3-209ENST00000509330 KRTAP12-2P59991 146 aa6.97□□□□□ -1.29
PHF3-209ENST00000509330 CRIPTQ9P021 101 aa6.94□□□□□ -1.3
PHF3-209ENST00000509330 KRTAP12-1P59990 96 aa6.89□□□□□ -1.31
PHF3-209ENST00000509330 LCE2CQ5TA81 110 aa6.89□□□□□ -1.31
PHF3-209ENST00000509330 M0R2T5 61 aa6.87□□□□□ -1.31
PHF3-209ENST00000509330 ROMO1P60602 79 aa6.79□□□□□ -1.32
PHF3-209ENST00000509330 MT1HP80294 61 aa6.76□□□□□ -1.33
PHF3-209ENST00000509330 C10orf95Q9H7T3 257 aa6.7□□□□□ -1.34
PHF3-209ENST00000509330 KRTAP25-1Q3LHN0 102 aa6.66□□□□□ -1.34
PHF3-209ENST00000509330 CAMK2N1Q7Z7J9 78 aa6.6□□□□□ -1.35
PHF3-209ENST00000509330 KRTAP10-10P60014 251 aa6.59□□□□□ -1.35
PHF3-209ENST00000509330 MT1FP04733 61 aa6.57□□□□□ -1.36
PHF3-209ENST00000509330 MT2AP02795 61 aa6.56□□□□□ -1.36
PHF3-209ENST00000509330 KRTAP9-8Q9BYQ0 159 aa6.53□□□□□ -1.36
PHF3-209ENST00000509330 KRTAP19-1Q8IUB9 90 aa6.51□□□□□ -1.37
PHF3-209ENST00000509330 SPRR2GQ9BYE4 73 aa6.45□□□□□ -1.38
PHF3-209ENST00000509330 PLAC4Q8WY50 150 aa6.39□□□□□ -1.39
PHF3-209ENST00000509330 USH2AO75445 5202 aa6.33□□□□□ -1.4
PHF3-209ENST00000509330 KRTAP9-3Q9BYQ3 159 aa6.26□□□□□ -1.41
PHF3-209ENST00000509330 MT1BP07438 61 aa6.23□□□□□ -1.41
PHF3-209ENST00000509330 TNP1P09430 55 aa6.22□□□□□ -1.41
PHF3-209ENST00000509330 LCE2AQ5TA79 106 aaPredicted RBP6.22□□□□□ -1.41
PHF3-209ENST00000509330 KRTAP19-8Q3LI54 63 aa6.2□□□□□ -1.42
PHF3-209ENST00000509330 LCE2BO14633 110 aa6.13□□□□□ -1.43
PHF3-209ENST00000509330 KRTAP10-5P60370 271 aa6.09□□□□□ -1.43
PHF3-209ENST00000509330 MT1XP80297 61 aa6.09□□□□□ -1.43
PHF3-209ENST00000509330 FSIP2Q5CZC0 6907 aa6.07□□□□□ -1.44
PHF3-209ENST00000509330 PP632Q6XCG6 107 aa6.04□□□□□ -1.44
PHF3-209ENST00000509330 LCE3AQ5TA76 89 aa6.01□□□□□ -1.45
PHF3-209ENST00000509330 KMT2DO14686 5537 aa6□□□□□ -1.45
PHF3-209ENST00000509330 KRTAP10-7P60409 375 aaPredicted RBP5.96□□□□□ -1.46
PHF3-209ENST00000509330 KRTAP15-1Q3LI76 137 aa5.96□□□□□ -1.46
PHF3-209ENST00000509330 PRO2289Q9P1D8 64 aa5.89□□□□□ -1.47
PHF3-209ENST00000509330 KRTAP10-12P60413 245 aa5.88□□□□□ -1.47
PHF3-209ENST00000509330 SSPOA2VEC9 5147 aa5.85□□□□□ -1.47
PHF3-209ENST00000509330 KRTAP23-1A1A580 65 aa5.84□□□□□ -1.47
PHF3-209ENST00000509330 NDUFAF8A1L188 74 aa5.78□□□□□ -1.48
PHF3-209ENST00000509330 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
PHF3-209ENST00000509330 KRTAP4-8Q9BYQ9 185 aa5.74□□□□□ -1.49
PHF3-209ENST00000509330 KRTAP8-1Q8IUC2 63 aa5.73□□□□□ -1.49
PHF3-209ENST00000509330 KRTAP12-3P60328 96 aa5.7□□□□□ -1.5
PHF3-209ENST00000509330 KRTAP19-5Q3LI72 72 aa5.63□□□□□ -1.51
PHF3-209ENST00000509330 LUZP6Q538Z0 58 aa5.57□□□□□ -1.52
PHF3-209ENST00000509330 H3BS24 57 aa5.53□□□□□ -1.52
PHF3-209ENST00000509330 FCGBPQ9Y6R7 5405 aaPredicted RBP5.52□□□□□ -1.53
PHF3-209ENST00000509330 KRTAP19-6Q3LI70 58 aa5.52□□□□□ -1.53
PHF3-209ENST00000509330 SPRR5A0A1B0GTR4 108 aa5.48□□□□□ -1.53
PHF3-209ENST00000509330 KRTAP19-7Q3SYF9 63 aa5.43□□□□□ -1.54
PHF3-209ENST00000509330 LCE2DQ5TA82 110 aaPredicted RBP5.42□□□□□ -1.54
PHF3-209ENST00000509330 MUC12Q9UKN1 5478 aa5.4□□□□□ -1.55
PHF3-209ENST00000509330 MACF1Q9UPN3 7388 aaKnown RBP5.35□□□□□ -1.55
PHF3-209ENST00000509330 KRTAP4-7Q9BYR0 210 aa5.35□□□□□ -1.55
PHF3-209ENST00000509330 LCE3CQ5T5A8 94 aa5.31□□□□□ -1.56
PHF3-209ENST00000509330 MT1EP04732 61 aa5.3□□□□□ -1.56
PHF3-209ENST00000509330 KRTAP9-2Q9BYQ4 174 aa5.28□□□□□ -1.56
PHF3-209ENST00000509330 SYNE2Q8WXH0 6885 aaKnown RBP5.27□□□□□ -1.57
PHF3-209ENST00000509330 MT1LQ93083 61 aa5.24□□□□□ -1.57
PHF3-209ENST00000509330 DSTQ03001 7570 aaKnown RBP5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms