RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 OCR1Q9BZK8 76 aa4.27□□□□□ -1.73
PDGFC-205ENST00000506880 IGKV2D-30A0A075B6S6 120 aa4.26□□□□□ -1.73
PDGFC-205ENST00000506880 SCGB1A1P11684 91 aa4.26□□□□□ -1.73
PDGFC-205ENST00000506880 MT1HP80294 61 aa4.25□□□□□ -1.73
PDGFC-205ENST00000506880 A0A087WVE0 104 aa4.24□□□□□ -1.73
PDGFC-205ENST00000506880 CYP4F30PQ9H0H9 118 aa4.24□□□□□ -1.73
PDGFC-205ENST00000506880 H0Y9P7 68 aa4.23□□□□□ -1.73
PDGFC-205ENST00000506880 H1FX-AS1Q4G0G2 97 aa4.23□□□□□ -1.73
PDGFC-205ENST00000506880 A8MUN3 132 aa4.22□□□□□ -1.73
PDGFC-205ENST00000506880 TRAV7A0A075B6U4 112 aa4.21□□□□□ -1.74
PDGFC-205ENST00000506880 MT-ATP8P03928 68 aa4.21□□□□□ -1.74
PDGFC-205ENST00000506880 M0R2T5 61 aa4.2□□□□□ -1.74
PDGFC-205ENST00000506880 C1orf64Q8NEQ6 169 aa4.2□□□□□ -1.74
PDGFC-205ENST00000506880 FAM236AA0A1B0GUQ0 79 aa4.18□□□□□ -1.74
PDGFC-205ENST00000506880 FAM236BA0A1B0GV22 79 aa4.18□□□□□ -1.74
PDGFC-205ENST00000506880 CRCT1Q9UGL9 99 aa4.18□□□□□ -1.74
PDGFC-205ENST00000506880 LINC00208Q96KT6 92 aa4.17□□□□□ -1.74
PDGFC-205ENST00000506880 KRTAP10-6P60371 365 aaPredicted RBP4.16□□□□□ -1.74
PDGFC-205ENST00000506880 C4orf26Q17RF5 130 aa4.15□□□□□ -1.75
PDGFC-205ENST00000506880 SERP2Q8N6R1 65 aa4.14□□□□□ -1.75
PDGFC-205ENST00000506880 S4R3F8 94 aa4.11□□□□□ -1.75
PDGFC-205ENST00000506880 CSAG1Q6PB30 78 aa4.1□□□□□ -1.75
PDGFC-205ENST00000506880 SPANXA2-OT1Q8N9U9 137 aa4.09□□□□□ -1.75
PDGFC-205ENST00000506880 KRTAP3-1Q9BYR8 98 aa4.09□□□□□ -1.75
PDGFC-205ENST00000506880 NDUFC1O43677 76 aa4.08□□□□□ -1.76
PDGFC-205ENST00000506880 KLKP1Q107X0 134 aa4.08□□□□□ -1.76
PDGFC-205ENST00000506880 DMAC1Q96GE9 116 aa4.08□□□□□ -1.76
PDGFC-205ENST00000506880 H0YAA0 97 aa4.05□□□□□ -1.76
PDGFC-205ENST00000506880 ACYP2P14621 99 aa4.05□□□□□ -1.76
PDGFC-205ENST00000506880 COX7CP15954 63 aa4.05□□□□□ -1.76
PDGFC-205ENST00000506880 LCA10Q71F78 164 aa4.03□□□□□ -1.76
PDGFC-205ENST00000506880 SPTSSBQ8NFR3 76 aa4.03□□□□□ -1.76
PDGFC-205ENST00000506880 C20orf197Q8N268 126 aa4.01□□□□□ -1.77
PDGFC-205ENST00000506880 CRIPTQ9P021 101 aa4.01□□□□□ -1.77
PDGFC-205ENST00000506880 MT2AP02795 61 aa4□□□□□ -1.77
PDGFC-205ENST00000506880 KRTAP10-10P60014 251 aa3.99□□□□□ -1.77
PDGFC-205ENST00000506880 ANAPC13Q9BS18 74 aa3.98□□□□□ -1.77
PDGFC-205ENST00000506880 SNURFQ9Y675 71 aa3.96□□□□□ -1.78
PDGFC-205ENST00000506880 MT1FP04733 61 aa3.95□□□□□ -1.78
PDGFC-205ENST00000506880 ATP5EP56381 51 aaPredicted RBP3.94□□□□□ -1.78
PDGFC-205ENST00000506880 CHKB-CPT1BH3BT56 60 aa3.92□□□□□ -1.78
PDGFC-205ENST00000506880 H7BZZ5 65 aa3.92□□□□□ -1.78
PDGFC-205ENST00000506880 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.89□□□□□ -1.79
PDGFC-205ENST00000506880 SPRR2GQ9BYE4 73 aa3.89□□□□□ -1.79
PDGFC-205ENST00000506880 SYNE2Q8WXH0 6885 aaKnown RBP3.85□□□□□ -1.79
PDGFC-205ENST00000506880 TMEM258P61165 79 aa3.84□□□□□ -1.79
PDGFC-205ENST00000506880 COA5Q86WW8 74 aa3.84□□□□□ -1.79
PDGFC-205ENST00000506880 ADM2Q7Z4H4 148 aa3.83□□□□□ -1.8
PDGFC-205ENST00000506880 KRTAP19-8Q3LI54 63 aa3.82□□□□□ -1.8
PDGFC-205ENST00000506880 M0QZ58 72 aa3.81□□□□□ -1.8
PDGFC-205ENST00000506880 CCDC179H3BU77 68 aa3.8□□□□□ -1.8
PDGFC-205ENST00000506880 SEC61GP60059 68 aa3.8□□□□□ -1.8
PDGFC-205ENST00000506880 R4GN34 69 aa3.8□□□□□ -1.8
PDGFC-205ENST00000506880 MACF1Q9UPN3 7388 aaKnown RBP3.8□□□□□ -1.8
PDGFC-205ENST00000506880 Q5VV11 94 aa3.79□□□□□ -1.8
PDGFC-205ENST00000506880 CYSTM1Q9H1C7 97 aa3.78□□□□□ -1.8
PDGFC-205ENST00000506880 KRTAP19-6Q3LI70 58 aa3.77□□□□□ -1.81
PDGFC-205ENST00000506880 SERP1Q9Y6X1 66 aa3.77□□□□□ -1.81
PDGFC-205ENST00000506880 A6NN06 94 aa3.75□□□□□ -1.81
PDGFC-205ENST00000506880 P0C880 135 aa3.74□□□□□ -1.81
PDGFC-205ENST00000506880 PRR15LQ9BU68 103 aa3.71□□□□□ -1.82
PDGFC-205ENST00000506880 MT1BP07438 61 aa3.7□□□□□ -1.82
PDGFC-205ENST00000506880 PLAC4Q8WY50 150 aa3.7□□□□□ -1.82
PDGFC-205ENST00000506880 PRO2289Q9P1D8 64 aa3.69□□□□□ -1.82
PDGFC-205ENST00000506880 USH2AO75445 5202 aa3.68□□□□□ -1.82
PDGFC-205ENST00000506880 V9GYY9 64 aa3.68□□□□□ -1.82
PDGFC-205ENST00000506880 A0A1B0GU69 56 aa3.67□□□□□ -1.82
PDGFC-205ENST00000506880 SSPOA2VEC9 5147 aa3.67□□□□□ -1.82
PDGFC-205ENST00000506880 FCGBPQ9Y6R7 5405 aaPredicted RBP3.67□□□□□ -1.82
PDGFC-205ENST00000506880 NEBP20929 6669 aa3.66□□□□□ -1.82
PDGFC-205ENST00000506880 LINC01558Q9Y6Z2 57 aa3.66□□□□□ -1.82
PDGFC-205ENST00000506880 A0A1B0GU33 70 aa3.65□□□□□ -1.83
PDGFC-205ENST00000506880 PCP4P48539 62 aa3.65□□□□□ -1.83
PDGFC-205ENST00000506880 KRTAP23-1A1A580 65 aa3.64□□□□□ -1.83
PDGFC-205ENST00000506880 KRTAP10-5P60370 271 aa3.64□□□□□ -1.83
PDGFC-205ENST00000506880 SMIM26A0A096LP01 95 aa3.62□□□□□ -1.83
PDGFC-205ENST00000506880 RPS28P62857 69 aaKnown RBP3.62□□□□□ -1.83
PDGFC-205ENST00000506880 Q1T7F1 81 aa3.58□□□□□ -1.84
PDGFC-205ENST00000506880 LINC01554Q52M75 96 aa3.58□□□□□ -1.84
PDGFC-205ENST00000506880 UQCR11O14957 56 aa3.56□□□□□ -1.84
PDGFC-205ENST00000506880 KRTAP12-2P59991 146 aa3.54□□□□□ -1.84
PDGFC-205ENST00000506880 KRTAP13-4Q3LI77 160 aa3.54□□□□□ -1.84
PDGFC-205ENST00000506880 MT1XP80297 61 aa3.53□□□□□ -1.84
PDGFC-205ENST00000506880 CAMK2N1Q7Z7J9 78 aa3.5□□□□□ -1.85
PDGFC-205ENST00000506880 KRTAP6-3Q3LI67 103 aa3.49□□□□□ -1.85
PDGFC-205ENST00000506880 SPATA8Q6RVD6 105 aa3.49□□□□□ -1.85
PDGFC-205ENST00000506880 KRTAP20-1Q3LI63 56 aa3.48□□□□□ -1.85
PDGFC-205ENST00000506880 KRTAP5-11Q6L8G4 156 aa3.48□□□□□ -1.85
PDGFC-205ENST00000506880 KRTAP15-1Q3LI76 137 aa3.47□□□□□ -1.85
PDGFC-205ENST00000506880 KRTAP5-9P26371 169 aa3.46□□□□□ -1.86
PDGFC-205ENST00000506880 KRTAP12-1P59990 96 aa3.46□□□□□ -1.86
PDGFC-205ENST00000506880 A0A0D9SG42 100 aa3.45□□□□□ -1.86
PDGFC-205ENST00000506880 K7ERS5 55 aa3.45□□□□□ -1.86
PDGFC-205ENST00000506880 MIR22HGQ0VDD5 57 aa3.44□□□□□ -1.86
PDGFC-205ENST00000506880 SPINT4Q6UDR6 99 aa3.43□□□□□ -1.86
PDGFC-205ENST00000506880 KRTAP10-12P60413 245 aa3.42□□□□□ -1.86
PDGFC-205ENST00000506880 PSPHP1O15172 72 aa3.39□□□□□ -1.87
PDGFC-205ENST00000506880 GPR98Q8WXG9 6306 aa3.38□□□□□ -1.87
PDGFC-205ENST00000506880 A0A0A0MQY5 61 aa3.37□□□□□ -1.87
PDGFC-205ENST00000506880 A8MU10 97 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 237 ms