RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 H7BZZ5 65 aa6.53□□□□□ -1.36
CPNE1-227ENST00000498056 LORP23490 312 aaPredicted RBP6.53□□□□□ -1.36
CPNE1-227ENST00000498056 ACYP2P14621 99 aa6.5□□□□□ -1.37
CPNE1-227ENST00000498056 CSAG1Q6PB30 78 aa6.49□□□□□ -1.37
CPNE1-227ENST00000498056 KRTAP3-3Q9BYR6 98 aa6.47□□□□□ -1.37
CPNE1-227ENST00000498056 CHKB-CPT1BH3BT56 60 aa6.45□□□□□ -1.38
CPNE1-227ENST00000498056 MT2AP02795 61 aa6.42□□□□□ -1.38
CPNE1-227ENST00000498056 KRTAP9-8Q9BYQ0 159 aa6.42□□□□□ -1.38
CPNE1-227ENST00000498056 COA5Q86WW8 74 aa6.39□□□□□ -1.39
CPNE1-227ENST00000498056 MT1FP04733 61 aa6.38□□□□□ -1.39
CPNE1-227ENST00000498056 ATP5EP56381 51 aaPredicted RBP6.37□□□□□ -1.39
CPNE1-227ENST00000498056 KRTAP10-10P60014 251 aa6.37□□□□□ -1.39
CPNE1-227ENST00000498056 SPTSSBQ8NFR3 76 aa6.37□□□□□ -1.39
CPNE1-227ENST00000498056 TMEM258P61165 79 aa6.36□□□□□ -1.39
CPNE1-227ENST00000498056 PCP4P48539 62 aa6.34□□□□□ -1.39
CPNE1-227ENST00000498056 H0YAA0 97 aa6.28□□□□□ -1.4
CPNE1-227ENST00000498056 ADM2Q7Z4H4 148 aa6.28□□□□□ -1.4
CPNE1-227ENST00000498056 LCE2DQ5TA82 110 aaPredicted RBP6.22□□□□□ -1.41
CPNE1-227ENST00000498056 KRTAP9-2Q9BYQ4 174 aa6.22□□□□□ -1.41
CPNE1-227ENST00000498056 KRTAP9-3Q9BYQ3 159 aa6.2□□□□□ -1.42
CPNE1-227ENST00000498056 P0C880 135 aa6.18□□□□□ -1.42
CPNE1-227ENST00000498056 KRTAP3-2Q9BYR7 98 aa6.15□□□□□ -1.42
CPNE1-227ENST00000498056 SERP1Q9Y6X1 66 aa6.15□□□□□ -1.42
CPNE1-227ENST00000498056 CRIPTQ9P021 101 aa6.14□□□□□ -1.43
CPNE1-227ENST00000498056 SEC61GP60059 68 aa6.12□□□□□ -1.43
CPNE1-227ENST00000498056 LCE2BO14633 110 aa6.11□□□□□ -1.43
CPNE1-227ENST00000498056 KRTAP19-1Q8IUB9 90 aa6.1□□□□□ -1.43
CPNE1-227ENST00000498056 R4GN34 69 aa6.1□□□□□ -1.43
CPNE1-227ENST00000498056 FSIP2Q5CZC0 6907 aa6.09□□□□□ -1.43
CPNE1-227ENST00000498056 SPRR2GQ9BYE4 73 aa6.09□□□□□ -1.43
CPNE1-227ENST00000498056 USH2AO75445 5202 aa6.08□□□□□ -1.44
CPNE1-227ENST00000498056 M0QZ58 72 aa6.08□□□□□ -1.44
CPNE1-227ENST00000498056 A0A1B0GU69 56 aa6.06□□□□□ -1.44
CPNE1-227ENST00000498056 LINC01554Q52M75 96 aa6□□□□□ -1.45
CPNE1-227ENST00000498056 Q5VV11 94 aa6□□□□□ -1.45
CPNE1-227ENST00000498056 PRR15LQ9BU68 103 aa6□□□□□ -1.45
CPNE1-227ENST00000498056 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
CPNE1-227ENST00000498056 KRTAP19-8Q3LI54 63 aa5.97□□□□□ -1.45
CPNE1-227ENST00000498056 SSPOA2VEC9 5147 aa5.95□□□□□ -1.46
CPNE1-227ENST00000498056 A0A1B0GU33 70 aa5.95□□□□□ -1.46
CPNE1-227ENST00000498056 MT1BP07438 61 aa5.94□□□□□ -1.46
CPNE1-227ENST00000498056 KRTAP13-4Q3LI77 160 aa5.94□□□□□ -1.46
CPNE1-227ENST00000498056 CRCT1Q9UGL9 99 aa5.93□□□□□ -1.46
CPNE1-227ENST00000498056 SMIM26A0A096LP01 95 aa5.92□□□□□ -1.46
CPNE1-227ENST00000498056 RPS28P62857 69 aaKnown RBP5.9□□□□□ -1.46
CPNE1-227ENST00000498056 V9GYY9 64 aa5.9□□□□□ -1.46
CPNE1-227ENST00000498056 SPATA8Q6RVD6 105 aa5.89□□□□□ -1.47
CPNE1-227ENST00000498056 KRTAP9-6A0A140TA67 174 aa5.88□□□□□ -1.47
CPNE1-227ENST00000498056 Q1T7F1 81 aa5.87□□□□□ -1.47
CPNE1-227ENST00000498056 A0A0D9SG42 100 aa5.85□□□□□ -1.47
CPNE1-227ENST00000498056 PSPHP1O15172 72 aa5.85□□□□□ -1.47
CPNE1-227ENST00000498056 PLAC4Q8WY50 150 aa5.85□□□□□ -1.47
CPNE1-227ENST00000498056 KRTAP19-6Q3LI70 58 aa5.81□□□□□ -1.48
CPNE1-227ENST00000498056 A6NN06 94 aa5.78□□□□□ -1.48
CPNE1-227ENST00000498056 UQCR11O14957 56 aa5.78□□□□□ -1.48
CPNE1-227ENST00000498056 A8MU10 97 aa5.77□□□□□ -1.49
CPNE1-227ENST00000498056 SVIPQ8NHG7 77 aa5.76□□□□□ -1.49
CPNE1-227ENST00000498056 SPINT4Q6UDR6 99 aa5.73□□□□□ -1.49
CPNE1-227ENST00000498056 FCGBPQ9Y6R7 5405 aaPredicted RBP5.73□□□□□ -1.49
CPNE1-227ENST00000498056 KRTAP10-5P60370 271 aa5.72□□□□□ -1.49
CPNE1-227ENST00000498056 MIR22HGQ0VDD5 57 aa5.7□□□□□ -1.5
CPNE1-227ENST00000498056 A6NED7 52 aa5.69□□□□□ -1.5
CPNE1-227ENST00000498056 KRTAP12-1P59990 96 aa5.69□□□□□ -1.5
CPNE1-227ENST00000498056 CAMK2N1Q7Z7J9 78 aa5.69□□□□□ -1.5
CPNE1-227ENST00000498056 PRO2289Q9P1D8 64 aa5.69□□□□□ -1.5
CPNE1-227ENST00000498056 MT1XP80297 61 aa5.68□□□□□ -1.5
CPNE1-227ENST00000498056 KRTAP12-2P59991 146 aa5.67□□□□□ -1.5
CPNE1-227ENST00000498056 MACF1Q9UPN3 7388 aaKnown RBP5.61□□□□□ -1.51
CPNE1-227ENST00000498056 K7ERS5 55 aa5.53□□□□□ -1.52
CPNE1-227ENST00000498056 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.52□□□□□ -1.53
CPNE1-227ENST00000498056 CDC42SE1Q9NRR8 79 aa5.49□□□□□ -1.53
CPNE1-227ENST00000498056 SYNE2Q8WXH0 6885 aaKnown RBP5.48□□□□□ -1.53
CPNE1-227ENST00000498056 KRTAP10-7P60409 375 aaPredicted RBP5.44□□□□□ -1.54
CPNE1-227ENST00000498056 C10orf95Q9H7T3 257 aa5.4□□□□□ -1.54
CPNE1-227ENST00000498056 KMT2DO14686 5537 aa5.39□□□□□ -1.55
CPNE1-227ENST00000498056 KRTAP10-12P60413 245 aa5.37□□□□□ -1.55
CPNE1-227ENST00000498056 BRK1Q8WUW1 75 aa5.37□□□□□ -1.55
CPNE1-227ENST00000498056 KRTAP9-7A8MTY7 169 aa5.33□□□□□ -1.56
CPNE1-227ENST00000498056 TNP1P09430 55 aa5.32□□□□□ -1.56
CPNE1-227ENST00000498056 KRTAP4-8A0A0G2JLE6 195 aa5.3□□□□□ -1.56
CPNE1-227ENST00000498056 KRTAP8-1Q8IUC2 63 aa5.3□□□□□ -1.56
CPNE1-227ENST00000498056 KRTAP4-8Q9BYQ9 185 aa5.3□□□□□ -1.56
CPNE1-227ENST00000498056 KRTAP6-3Q3LI67 103 aa5.25□□□□□ -1.57
CPNE1-227ENST00000498056 ROMO1P60602 79 aa5.21□□□□□ -1.58
CPNE1-227ENST00000498056 KRTAP25-1Q3LHN0 102 aa5.21□□□□□ -1.58
CPNE1-227ENST00000498056 SPRR2FQ96RM1 72 aa5.19□□□□□ -1.58
CPNE1-227ENST00000498056 KRTAP5-9P26371 169 aa5.18□□□□□ -1.58
CPNE1-227ENST00000498056 LCE3AQ5TA76 89 aa5.17□□□□□ -1.58
CPNE1-227ENST00000498056 MUC12Q9UKN1 5478 aa5.14□□□□□ -1.59
CPNE1-227ENST00000498056 NEBP20929 6669 aa5.09□□□□□ -1.59
CPNE1-227ENST00000498056 KRTAP19-5Q3LI72 72 aa5.06□□□□□ -1.6
CPNE1-227ENST00000498056 KRTAP19-7Q3SYF9 63 aa5.05□□□□□ -1.6
CPNE1-227ENST00000498056 SPRR2EP22531 72 aa5.03□□□□□ -1.6
CPNE1-227ENST00000498056 SPRR2BP35325 72 aa5.03□□□□□ -1.6
CPNE1-227ENST00000498056 SPRR2AP35326 72 aa5.03□□□□□ -1.6
CPNE1-227ENST00000498056 PMAIP1Q13794 54 aa5.02□□□□□ -1.61
CPNE1-227ENST00000498056 PRO0628Q9UI54 55 aa5.02□□□□□ -1.61
CPNE1-227ENST00000498056 MDN1Q9NU22 5596 aa5.02□□□□□ -1.61
CPNE1-227ENST00000498056 MT1EP04732 61 aa5.01□□□□□ -1.61
CPNE1-227ENST00000498056 KRTAP23-1A1A580 65 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms