RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 H0Y9P7 68 aa7.75□□□□□ -1.17
VIM-208ENST00000497849 MP68P56378 58 aa7.75□□□□□ -1.17
VIM-208ENST00000497849 MDN1Q9NU22 5596 aa7.74□□□□□ -1.17
VIM-208ENST00000497849 KMT2DO14686 5537 aa7.73□□□□□ -1.17
VIM-208ENST00000497849 KRTAP5-9P26371 169 aa7.71□□□□□ -1.18
VIM-208ENST00000497849 H3BPC8 53 aa7.7□□□□□ -1.18
VIM-208ENST00000497849 PCP4P48539 62 aa7.7□□□□□ -1.18
VIM-208ENST00000497849 SPINK7P58062 85 aa7.7□□□□□ -1.18
VIM-208ENST00000497849 C20orf197Q8N268 126 aa7.69□□□□□ -1.18
VIM-208ENST00000497849 LINC00208Q96KT6 92 aa7.68□□□□□ -1.18
VIM-208ENST00000497849 A6NN06 94 aa7.67□□□□□ -1.18
VIM-208ENST00000497849 CCDC179H3BU77 68 aa7.67□□□□□ -1.18
VIM-208ENST00000497849 C1orf64Q8NEQ6 169 aa7.67□□□□□ -1.18
VIM-208ENST00000497849 LOC101927531A0A1B0GV80 90 aa7.65□□□□□ -1.18
VIM-208ENST00000497849 IGKV2D-30A0A075B6S6 120 aa7.64□□□□□ -1.19
VIM-208ENST00000497849 IGKV2-30P06310 120 aa7.64□□□□□ -1.19
VIM-208ENST00000497849 KRTAP2-3P0C7H8 128 aa7.64□□□□□ -1.19
VIM-208ENST00000497849 KRTAP2-4Q9BYR9 128 aa7.64□□□□□ -1.19
VIM-208ENST00000497849 SNURFQ9Y675 71 aa7.64□□□□□ -1.19
VIM-208ENST00000497849 KLKP1Q107X0 134 aa7.62□□□□□ -1.19
VIM-208ENST00000497849 C7orf65Q6ZTY9 151 aa7.59□□□□□ -1.19
VIM-208ENST00000497849 CYP4F30PQ9H0H9 118 aa7.59□□□□□ -1.19
VIM-208ENST00000497849 MT1BP07438 61 aa7.56□□□□□ -1.2
VIM-208ENST00000497849 NDUFC1O43677 76 aa7.55□□□□□ -1.2
VIM-208ENST00000497849 CYSTM1Q9H1C7 97 aa7.54□□□□□ -1.2
VIM-208ENST00000497849 H7BZZ5 65 aa7.5□□□□□ -1.21
VIM-208ENST00000497849 KRTAP10-5P60370 271 aa7.5□□□□□ -1.21
VIM-208ENST00000497849 C4orf26Q17RF5 130 aa7.47□□□□□ -1.21
VIM-208ENST00000497849 H1FX-AS1Q4G0G2 97 aa7.46□□□□□ -1.22
VIM-208ENST00000497849 Q5VV11 94 aa7.44□□□□□ -1.22
VIM-208ENST00000497849 SPANXA2-OT1Q8N9U9 137 aa7.43□□□□□ -1.22
VIM-208ENST00000497849 KRTAP19-8Q3LI54 63 aa7.42□□□□□ -1.22
VIM-208ENST00000497849 TMEM258P61165 79 aa7.41□□□□□ -1.22
VIM-208ENST00000497849 KRTAP3-1Q9BYR8 98 aa7.39□□□□□ -1.23
VIM-208ENST00000497849 ATP5EP56381 51 aaPredicted RBP7.37□□□□□ -1.23
VIM-208ENST00000497849 KRTAP2-2Q9BYT5 123 aa7.36□□□□□ -1.23
VIM-208ENST00000497849 KRTAP2-1Q9BYU5 128 aa7.36□□□□□ -1.23
VIM-208ENST00000497849 SPRR2GQ9BYE4 73 aa7.35□□□□□ -1.23
VIM-208ENST00000497849 SPRR2EP22531 72 aa7.34□□□□□ -1.23
VIM-208ENST00000497849 SPRR2BP35325 72 aa7.34□□□□□ -1.23
VIM-208ENST00000497849 SPRR2AP35326 72 aa7.34□□□□□ -1.23
VIM-208ENST00000497849 A8MUN3 132 aa7.32□□□□□ -1.24
VIM-208ENST00000497849 DMAC1Q96GE9 116 aa7.32□□□□□ -1.24
VIM-208ENST00000497849 SPRR2FQ96RM1 72 aa7.3□□□□□ -1.24
VIM-208ENST00000497849 ACYP2P14621 99 aa7.28□□□□□ -1.24
VIM-208ENST00000497849 COA5Q86WW8 74 aa7.2□□□□□ -1.26
VIM-208ENST00000497849 S4R3F8 94 aa7.2□□□□□ -1.26
VIM-208ENST00000497849 LCE1AQ5T7P2 110 aa7.19□□□□□ -1.26
VIM-208ENST00000497849 SERP1Q9Y6X1 66 aa7.19□□□□□ -1.26
VIM-208ENST00000497849 CHKB-CPT1BH3BT56 60 aa7.18□□□□□ -1.26
VIM-208ENST00000497849 LCA10Q71F78 164 aa7.18□□□□□ -1.26
VIM-208ENST00000497849 KRTAP3-3Q9BYR6 98 aa7.14□□□□□ -1.27
VIM-208ENST00000497849 GPR98Q8WXG9 6306 aa7.12□□□□□ -1.27
VIM-208ENST00000497849 SPRR2DP22532 72 aa7.11□□□□□ -1.27
VIM-208ENST00000497849 RPS28P62857 69 aaKnown RBP7.1□□□□□ -1.27
VIM-208ENST00000497849 CSAG1Q6PB30 78 aa7.09□□□□□ -1.27
VIM-208ENST00000497849 SPTSSBQ8NFR3 76 aa7.08□□□□□ -1.28
VIM-208ENST00000497849 KRTAP8-1Q8IUC2 63 aa7.05□□□□□ -1.28
VIM-208ENST00000497849 SMIM26A0A096LP01 95 aa6.98□□□□□ -1.29
VIM-208ENST00000497849 LCE3BQ5TA77 95 aa6.98□□□□□ -1.29
VIM-208ENST00000497849 MT1XP80297 61 aa6.92□□□□□ -1.3
VIM-208ENST00000497849 CRIPTQ9P021 101 aa6.92□□□□□ -1.3
VIM-208ENST00000497849 V9GYY9 64 aa6.89□□□□□ -1.31
VIM-208ENST00000497849 PRO2289Q9P1D8 64 aa6.88□□□□□ -1.31
VIM-208ENST00000497849 LINC01558Q9Y6Z2 57 aa6.88□□□□□ -1.31
VIM-208ENST00000497849 KRTAP4-8A0A0G2JLE6 195 aa6.86□□□□□ -1.31
VIM-208ENST00000497849 Q1T7F1 81 aa6.86□□□□□ -1.31
VIM-208ENST00000497849 ADM2Q7Z4H4 148 aa6.86□□□□□ -1.31
VIM-208ENST00000497849 KRTAP4-8Q9BYQ9 185 aa6.86□□□□□ -1.31
VIM-208ENST00000497849 KRTAP12-2P59991 146 aa6.85□□□□□ -1.31
VIM-208ENST00000497849 SEC61GP60059 68 aa6.85□□□□□ -1.31
VIM-208ENST00000497849 A0A1B0GU69 56 aa6.82□□□□□ -1.32
VIM-208ENST00000497849 H0YAA0 97 aa6.82□□□□□ -1.32
VIM-208ENST00000497849 PRR15LQ9BU68 103 aa6.8□□□□□ -1.32
VIM-208ENST00000497849 DSTQ03001 7570 aaKnown RBP6.79□□□□□ -1.32
VIM-208ENST00000497849 KRTAP3-2Q9BYR7 98 aa6.78□□□□□ -1.32
VIM-208ENST00000497849 P0C880 135 aa6.77□□□□□ -1.33
VIM-208ENST00000497849 PSPHP1O15172 72 aa6.75□□□□□ -1.33
VIM-208ENST00000497849 KRTAP4-9Q9BYQ8 210 aa6.7□□□□□ -1.34
VIM-208ENST00000497849 A0A1B0GU33 70 aa6.66□□□□□ -1.34
VIM-208ENST00000497849 PLAC4Q8WY50 150 aa6.66□□□□□ -1.34
VIM-208ENST00000497849 M0QZ58 72 aa6.6□□□□□ -1.35
VIM-208ENST00000497849 KRTAP10-7P60409 375 aaPredicted RBP6.6□□□□□ -1.35
VIM-208ENST00000497849 R4GN34 69 aa6.6□□□□□ -1.35
VIM-208ENST00000497849 UQCR11O14957 56 aa6.59□□□□□ -1.35
VIM-208ENST00000497849 A6NED7 52 aa6.56□□□□□ -1.36
VIM-208ENST00000497849 KRTAP10-12P60413 245 aa6.55□□□□□ -1.36
VIM-208ENST00000497849 KRTAP13-4Q3LI77 160 aa6.52□□□□□ -1.37
VIM-208ENST00000497849 LINC01554Q52M75 96 aa6.52□□□□□ -1.37
VIM-208ENST00000497849 SPATA8Q6RVD6 105 aa6.52□□□□□ -1.37
VIM-208ENST00000497849 MIR22HGQ0VDD5 57 aa6.5□□□□□ -1.37
VIM-208ENST00000497849 LCE1DQ5T752 114 aa6.45□□□□□ -1.38
VIM-208ENST00000497849 A0A0D9SG42 100 aa6.42□□□□□ -1.38
VIM-208ENST00000497849 CDC42SE1Q9NRR8 79 aa6.42□□□□□ -1.38
VIM-208ENST00000497849 HMCN1Q96RW7 5635 aa6.42□□□□□ -1.38
VIM-208ENST00000497849 A8MU10 97 aa6.41□□□□□ -1.38
VIM-208ENST00000497849 LCE5AQ5TCM9 118 aa6.37□□□□□ -1.39
VIM-208ENST00000497849 BRK1Q8WUW1 75 aa6.37□□□□□ -1.39
VIM-208ENST00000497849 AHNAK2Q8IVF2 5795 aa6.37□□□□□ -1.39
VIM-208ENST00000497849 KRTAP5-10Q6L8G5 202 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms