RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 LCA10Q71F78 164 aa6.94□□□□□ -1.3
LIMS1-213ENST00000496653 KRTAP9-6A0A140TA67 174 aa6.92□□□□□ -1.3
LIMS1-213ENST00000496653 KLKP1Q107X0 134 aa6.91□□□□□ -1.3
LIMS1-213ENST00000496653 FSIP2Q5CZC0 6907 aa6.89□□□□□ -1.31
LIMS1-213ENST00000496653 NDUFC1O43677 76 aa6.88□□□□□ -1.31
LIMS1-213ENST00000496653 CRCT1Q9UGL9 99 aa6.88□□□□□ -1.31
LIMS1-213ENST00000496653 H3BS24 57 aa6.87□□□□□ -1.31
LIMS1-213ENST00000496653 KRTAP9-3Q9BYQ3 159 aa6.87□□□□□ -1.31
LIMS1-213ENST00000496653 DMAC1Q96GE9 116 aa6.82□□□□□ -1.32
LIMS1-213ENST00000496653 SERP2Q8N6R1 65 aa6.8□□□□□ -1.32
LIMS1-213ENST00000496653 H0YAA0 97 aa6.76□□□□□ -1.33
LIMS1-213ENST00000496653 LCE2BO14633 110 aa6.75□□□□□ -1.33
LIMS1-213ENST00000496653 ACYP2P14621 99 aa6.73□□□□□ -1.33
LIMS1-213ENST00000496653 C20orf197Q8N268 126 aa6.72□□□□□ -1.33
LIMS1-213ENST00000496653 CRIPTQ9P021 101 aa6.72□□□□□ -1.33
LIMS1-213ENST00000496653 SNURFQ9Y675 71 aa6.71□□□□□ -1.34
LIMS1-213ENST00000496653 SPANXA2-OT1Q8N9U9 137 aa6.69□□□□□ -1.34
LIMS1-213ENST00000496653 SPTSSBQ8NFR3 76 aa6.68□□□□□ -1.34
LIMS1-213ENST00000496653 USH2AO75445 5202 aa6.67□□□□□ -1.34
LIMS1-213ENST00000496653 COX7CP15954 63 aa6.64□□□□□ -1.35
LIMS1-213ENST00000496653 SPRR2GQ9BYE4 73 aa6.64□□□□□ -1.35
LIMS1-213ENST00000496653 CHKB-CPT1BH3BT56 60 aa6.63□□□□□ -1.35
LIMS1-213ENST00000496653 ADM2Q7Z4H4 148 aa6.62□□□□□ -1.35
LIMS1-213ENST00000496653 KRTAP19-1Q8IUB9 90 aa6.62□□□□□ -1.35
LIMS1-213ENST00000496653 Q5VV11 94 aa6.58□□□□□ -1.36
LIMS1-213ENST00000496653 SSPOA2VEC9 5147 aa6.56□□□□□ -1.36
LIMS1-213ENST00000496653 KRTAP19-6Q3LI70 58 aa6.55□□□□□ -1.36
LIMS1-213ENST00000496653 ANAPC13Q9BS18 74 aa6.55□□□□□ -1.36
LIMS1-213ENST00000496653 KRTAP19-8Q3LI54 63 aa6.54□□□□□ -1.36
LIMS1-213ENST00000496653 R4GN34 69 aa6.49□□□□□ -1.37
LIMS1-213ENST00000496653 A0A0A0MQY5 61 aa6.48□□□□□ -1.37
LIMS1-213ENST00000496653 H7BZZ5 65 aa6.46□□□□□ -1.38
LIMS1-213ENST00000496653 MT1BP07438 61 aa6.45□□□□□ -1.38
LIMS1-213ENST00000496653 P0C880 135 aa6.45□□□□□ -1.38
LIMS1-213ENST00000496653 SEC61GP60059 68 aa6.45□□□□□ -1.38
LIMS1-213ENST00000496653 FCGBPQ9Y6R7 5405 aaPredicted RBP6.44□□□□□ -1.38
LIMS1-213ENST00000496653 COA5Q86WW8 74 aa6.44□□□□□ -1.38
LIMS1-213ENST00000496653 M0QZ58 72 aa6.42□□□□□ -1.38
LIMS1-213ENST00000496653 A6NN06 94 aa6.39□□□□□ -1.39
LIMS1-213ENST00000496653 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.38□□□□□ -1.39
LIMS1-213ENST00000496653 CYSTM1Q9H1C7 97 aa6.37□□□□□ -1.39
LIMS1-213ENST00000496653 ATP5EP56381 51 aaPredicted RBP6.35□□□□□ -1.39
LIMS1-213ENST00000496653 PLAC4Q8WY50 150 aa6.34□□□□□ -1.39
LIMS1-213ENST00000496653 MACF1Q9UPN3 7388 aaKnown RBP6.33□□□□□ -1.4
LIMS1-213ENST00000496653 CCDC179H3BU77 68 aa6.31□□□□□ -1.4
LIMS1-213ENST00000496653 KRTAP10-5P60370 271 aa6.31□□□□□ -1.4
LIMS1-213ENST00000496653 PRO2289Q9P1D8 64 aa6.3□□□□□ -1.4
LIMS1-213ENST00000496653 LINC01554Q52M75 96 aa6.29□□□□□ -1.4
LIMS1-213ENST00000496653 SERP1Q9Y6X1 66 aa6.29□□□□□ -1.4
LIMS1-213ENST00000496653 KRTAP9-7A8MTY7 169 aa6.25□□□□□ -1.41
LIMS1-213ENST00000496653 TMEM258P61165 79 aa6.22□□□□□ -1.41
LIMS1-213ENST00000496653 A0A1B0GU69 56 aa6.15□□□□□ -1.42
LIMS1-213ENST00000496653 SYNE2Q8WXH0 6885 aaKnown RBP6.15□□□□□ -1.43
LIMS1-213ENST00000496653 A0A1B0GU33 70 aa6.12□□□□□ -1.43
LIMS1-213ENST00000496653 MT1XP80297 61 aa6.12□□□□□ -1.43
LIMS1-213ENST00000496653 PRR15LQ9BU68 103 aa6.1□□□□□ -1.43
LIMS1-213ENST00000496653 KRTAP6-3Q3LI67 103 aa6.08□□□□□ -1.44
LIMS1-213ENST00000496653 KRTAP13-4Q3LI77 160 aa6.08□□□□□ -1.44
LIMS1-213ENST00000496653 CAMK2N1Q7Z7J9 78 aa6.02□□□□□ -1.45
LIMS1-213ENST00000496653 SMIM26A0A096LP01 95 aa6.01□□□□□ -1.45
LIMS1-213ENST00000496653 KRTAP12-2P59991 146 aa6.01□□□□□ -1.45
LIMS1-213ENST00000496653 SPATA8Q6RVD6 105 aa6□□□□□ -1.45
LIMS1-213ENST00000496653 A0A0D9SG42 100 aa5.99□□□□□ -1.45
LIMS1-213ENST00000496653 KRTAP23-1A1A580 65 aa5.99□□□□□ -1.45
LIMS1-213ENST00000496653 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
LIMS1-213ENST00000496653 V9GYY9 64 aa5.98□□□□□ -1.45
LIMS1-213ENST00000496653 SPINT4Q6UDR6 99 aa5.91□□□□□ -1.46
LIMS1-213ENST00000496653 KRTAP5-9P26371 169 aa5.9□□□□□ -1.46
LIMS1-213ENST00000496653 KRTAP12-1P59990 96 aa5.87□□□□□ -1.47
LIMS1-213ENST00000496653 UQCR11O14957 56 aa5.86□□□□□ -1.47
LIMS1-213ENST00000496653 KRTAP8-1Q8IUC2 63 aa5.86□□□□□ -1.47
LIMS1-213ENST00000496653 KRTAP10-12P60413 245 aa5.84□□□□□ -1.47
LIMS1-213ENST00000496653 NEBP20929 6669 aa5.82□□□□□ -1.48
LIMS1-213ENST00000496653 KRTAP10-7P60409 375 aaPredicted RBP5.82□□□□□ -1.48
LIMS1-213ENST00000496653 A8MU10 97 aa5.81□□□□□ -1.48
LIMS1-213ENST00000496653 SPRR2FQ96RM1 72 aa5.78□□□□□ -1.48
LIMS1-213ENST00000496653 Q1T7F1 81 aa5.77□□□□□ -1.49
LIMS1-213ENST00000496653 KMT2DO14686 5537 aa5.77□□□□□ -1.49
LIMS1-213ENST00000496653 MUC12Q9UKN1 5478 aa5.77□□□□□ -1.49
LIMS1-213ENST00000496653 MIR22HGQ0VDD5 57 aa5.72□□□□□ -1.49
LIMS1-213ENST00000496653 KRTAP4-8A0A0G2JLE6 195 aa5.71□□□□□ -1.5
LIMS1-213ENST00000496653 RPS28P62857 69 aaKnown RBP5.71□□□□□ -1.5
LIMS1-213ENST00000496653 KRTAP4-8Q9BYQ9 185 aa5.71□□□□□ -1.5
LIMS1-213ENST00000496653 PSPHP1O15172 72 aa5.69□□□□□ -1.5
LIMS1-213ENST00000496653 K7ERS5 55 aa5.68□□□□□ -1.5
LIMS1-213ENST00000496653 MDN1Q9NU22 5596 aa5.66□□□□□ -1.5
LIMS1-213ENST00000496653 SPRR2EP22531 72 aa5.64□□□□□ -1.51
LIMS1-213ENST00000496653 SPRR2BP35325 72 aa5.64□□□□□ -1.51
LIMS1-213ENST00000496653 SPRR2AP35326 72 aa5.64□□□□□ -1.51
LIMS1-213ENST00000496653 TNP1P09430 55 aa5.62□□□□□ -1.51
LIMS1-213ENST00000496653 A6NED7 52 aa5.58□□□□□ -1.52
LIMS1-213ENST00000496653 LCE1AQ5T7P2 110 aa5.57□□□□□ -1.52
LIMS1-213ENST00000496653 C10orf95Q9H7T3 257 aa5.55□□□□□ -1.52
LIMS1-213ENST00000496653 KRTAP20-1Q3LI63 56 aa5.52□□□□□ -1.53
LIMS1-213ENST00000496653 PRO0628Q9UI54 55 aa5.52□□□□□ -1.53
LIMS1-213ENST00000496653 SPRR2DP22532 72 aa5.46□□□□□ -1.54
LIMS1-213ENST00000496653 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
LIMS1-213ENST00000496653 KRTAP2-3P0C7H8 128 aa5.44□□□□□ -1.54
LIMS1-213ENST00000496653 KRTAP25-1Q3LHN0 102 aa5.44□□□□□ -1.54
LIMS1-213ENST00000496653 KRTAP2-4Q9BYR9 128 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms