RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 LCE2AQ5TA79 106 aaPredicted RBP9.42□□□□□ -0.9
USP39-218ENST00000493829 ACYP2P14621 99 aa9.41□□□□□ -0.9
USP39-218ENST00000493829 KRTAP3-3Q9BYR6 98 aa9.34□□□□□ -0.91
USP39-218ENST00000493829 TMEM258P61165 79 aa9.32□□□□□ -0.92
USP39-218ENST00000493829 CHKB-CPT1BH3BT56 60 aa9.32□□□□□ -0.92
USP39-218ENST00000493829 COA5Q86WW8 74 aa9.29□□□□□ -0.92
USP39-218ENST00000493829 ATP5EP56381 51 aaPredicted RBP9.28□□□□□ -0.92
USP39-218ENST00000493829 CSAG1Q6PB30 78 aa9.28□□□□□ -0.92
USP39-218ENST00000493829 KRTAP10-6P60371 365 aaPredicted RBP9.27□□□□□ -0.93
USP39-218ENST00000493829 LORP23490 312 aaPredicted RBP9.2□□□□□ -0.94
USP39-218ENST00000493829 SPTSSBQ8NFR3 76 aa9.15□□□□□ -0.94
USP39-218ENST00000493829 KRTAP9-8Q9BYQ0 159 aa9.13□□□□□ -0.95
USP39-218ENST00000493829 MT2AP02795 61 aa9.1□□□□□ -0.95
USP39-218ENST00000493829 MT1FP04733 61 aa9.05□□□□□ -0.96
USP39-218ENST00000493829 SERP1Q9Y6X1 66 aa9.04□□□□□ -0.96
USP39-218ENST00000493829 ADM2Q7Z4H4 148 aa9.03□□□□□ -0.96
USP39-218ENST00000493829 KRTAP10-10P60014 251 aa9.02□□□□□ -0.97
USP39-218ENST00000493829 H0YAA0 97 aa8.97□□□□□ -0.97
USP39-218ENST00000493829 P0C880 135 aa8.92□□□□□ -0.98
USP39-218ENST00000493829 KRTAP3-2Q9BYR7 98 aa8.91□□□□□ -0.98
USP39-218ENST00000493829 SEC61GP60059 68 aa8.83□□□□□ -1
USP39-218ENST00000493829 KRTAP9-3Q9BYQ3 159 aa8.81□□□□□ -1
USP39-218ENST00000493829 A0A1B0GU69 56 aa8.79□□□□□ -1
USP39-218ENST00000493829 RPS28P62857 69 aaKnown RBP8.77□□□□□ -1.01
USP39-218ENST00000493829 LINC01558Q9Y6Z2 57 aa8.75□□□□□ -1.01
USP39-218ENST00000493829 SMIM26A0A096LP01 95 aa8.73□□□□□ -1.01
USP39-218ENST00000493829 CRIPTQ9P021 101 aa8.73□□□□□ -1.01
USP39-218ENST00000493829 R4GN34 69 aa8.72□□□□□ -1.01
USP39-218ENST00000493829 M0QZ58 72 aa8.71□□□□□ -1.02
USP39-218ENST00000493829 KRTAP19-1Q8IUB9 90 aa8.71□□□□□ -1.02
USP39-218ENST00000493829 PRR15LQ9BU68 103 aa8.69□□□□□ -1.02
USP39-218ENST00000493829 LCE2DQ5TA82 110 aaPredicted RBP8.68□□□□□ -1.02
USP39-218ENST00000493829 SPRR2GQ9BYE4 73 aa8.67□□□□□ -1.02
USP39-218ENST00000493829 LCE2BO14633 110 aa8.66□□□□□ -1.02
USP39-218ENST00000493829 Q1T7F1 81 aa8.64□□□□□ -1.03
USP39-218ENST00000493829 V9GYY9 64 aa8.63□□□□□ -1.03
USP39-218ENST00000493829 A0A1B0GU33 70 aa8.62□□□□□ -1.03
USP39-218ENST00000493829 KRTAP9-2Q9BYQ4 174 aa8.62□□□□□ -1.03
USP39-218ENST00000493829 PSPHP1O15172 72 aa8.62□□□□□ -1.03
USP39-218ENST00000493829 KRTAP13-4Q3LI77 160 aa8.62□□□□□ -1.03
USP39-218ENST00000493829 LINC01554Q52M75 96 aa8.6□□□□□ -1.03
USP39-218ENST00000493829 SPATA8Q6RVD6 105 aa8.57□□□□□ -1.04
USP39-218ENST00000493829 USH2AO75445 5202 aa8.5□□□□□ -1.05
USP39-218ENST00000493829 KRTAP19-8Q3LI54 63 aa8.49□□□□□ -1.05
USP39-218ENST00000493829 Q5VV11 94 aa8.49□□□□□ -1.05
USP39-218ENST00000493829 A0A0D9SG42 100 aa8.47□□□□□ -1.05
USP39-218ENST00000493829 MT1BP07438 61 aa8.46□□□□□ -1.06
USP39-218ENST00000493829 FSIP2Q5CZC0 6907 aa8.43□□□□□ -1.06
USP39-218ENST00000493829 UQCR11O14957 56 aa8.42□□□□□ -1.06
USP39-218ENST00000493829 A8MU10 97 aa8.4□□□□□ -1.07
USP39-218ENST00000493829 A6NED7 52 aa8.34□□□□□ -1.08
USP39-218ENST00000493829 PLAC4Q8WY50 150 aa8.34□□□□□ -1.08
USP39-218ENST00000493829 MIR22HGQ0VDD5 57 aa8.32□□□□□ -1.08
USP39-218ENST00000493829 SSPOA2VEC9 5147 aa8.28□□□□□ -1.08
USP39-218ENST00000493829 A6NN06 94 aa8.27□□□□□ -1.08
USP39-218ENST00000493829 SPINT4Q6UDR6 99 aa8.27□□□□□ -1.08
USP39-218ENST00000493829 CRCT1Q9UGL9 99 aa8.24□□□□□ -1.09
USP39-218ENST00000493829 KRTAP12-1P59990 96 aa8.24□□□□□ -1.09
USP39-218ENST00000493829 KRTAP12-2P59991 146 aa8.22□□□□□ -1.09
USP39-218ENST00000493829 KRTAP19-6Q3LI70 58 aa8.18□□□□□ -1.1
USP39-218ENST00000493829 CAMK2N1Q7Z7J9 78 aa8.14□□□□□ -1.11
USP39-218ENST00000493829 KRTAP9-6A0A140TA67 174 aa8.1□□□□□ -1.11
USP39-218ENST00000493829 MT1XP80297 61 aa8.1□□□□□ -1.11
USP39-218ENST00000493829 KRTAP10-5P60370 271 aa8.09□□□□□ -1.11
USP39-218ENST00000493829 CDC42SE1Q9NRR8 79 aa8.08□□□□□ -1.12
USP39-218ENST00000493829 PRO2289Q9P1D8 64 aa8.04□□□□□ -1.12
USP39-218ENST00000493829 K7ERS5 55 aa8□□□□□ -1.13
USP39-218ENST00000493829 FCGBPQ9Y6R7 5405 aaPredicted RBP7.99□□□□□ -1.13
USP39-218ENST00000493829 BRK1Q8WUW1 75 aa7.97□□□□□ -1.13
USP39-218ENST00000493829 C10orf95Q9H7T3 257 aa7.83□□□□□ -1.16
USP39-218ENST00000493829 KRTAP10-7P60409 375 aaPredicted RBP7.78□□□□□ -1.16
USP39-218ENST00000493829 MACF1Q9UPN3 7388 aaKnown RBP7.7□□□□□ -1.18
USP39-218ENST00000493829 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.66□□□□□ -1.18
USP39-218ENST00000493829 KRTAP10-12P60413 245 aa7.65□□□□□ -1.18
USP39-218ENST00000493829 TNP1P09430 55 aa7.63□□□□□ -1.19
USP39-218ENST00000493829 ROMO1P60602 79 aa7.6□□□□□ -1.19
USP39-218ENST00000493829 KRTAP4-8A0A0G2JLE6 195 aa7.58□□□□□ -1.2
USP39-218ENST00000493829 KRTAP4-8Q9BYQ9 185 aa7.58□□□□□ -1.2
USP39-218ENST00000493829 KMT2DO14686 5537 aa7.57□□□□□ -1.2
USP39-218ENST00000493829 KRTAP25-1Q3LHN0 102 aa7.51□□□□□ -1.21
USP39-218ENST00000493829 PRO0628Q9UI54 55 aa7.51□□□□□ -1.21
USP39-218ENST00000493829 SYNE2Q8WXH0 6885 aaKnown RBP7.5□□□□□ -1.21
USP39-218ENST00000493829 PMAIP1Q13794 54 aa7.48□□□□□ -1.21
USP39-218ENST00000493829 KRTAP8-1Q8IUC2 63 aa7.47□□□□□ -1.21
USP39-218ENST00000493829 LCE3AQ5TA76 89 aa7.44□□□□□ -1.22
USP39-218ENST00000493829 KRTAP9-7A8MTY7 169 aa7.36□□□□□ -1.23
USP39-218ENST00000493829 KRTAP6-3Q3LI67 103 aa7.32□□□□□ -1.24
USP39-218ENST00000493829 SPRR2FQ96RM1 72 aa7.3□□□□□ -1.24
USP39-218ENST00000493829 KRTAP5-9P26371 169 aa7.25□□□□□ -1.25
USP39-218ENST00000493829 KRTAP19-5Q3LI72 72 aa7.25□□□□□ -1.25
USP39-218ENST00000493829 KRTAP19-7Q3SYF9 63 aa7.22□□□□□ -1.25
USP39-218ENST00000493829 KRTAP23-1A1A580 65 aa7.18□□□□□ -1.26
USP39-218ENST00000493829 PP632Q6XCG6 107 aa7.13□□□□□ -1.27
USP39-218ENST00000493829 MT1EP04732 61 aa7.12□□□□□ -1.27
USP39-218ENST00000493829 PRAC1Q96KF2 57 aa7.12□□□□□ -1.27
USP39-218ENST00000493829 MUC12Q9UKN1 5478 aa7.11□□□□□ -1.27
USP39-218ENST00000493829 KRTAP12-3P60328 96 aa7.11□□□□□ -1.27
USP39-218ENST00000493829 SPRR2EP22531 72 aa7.03□□□□□ -1.28
USP39-218ENST00000493829 SPRR2BP35325 72 aa7.03□□□□□ -1.28
USP39-218ENST00000493829 SPRR2AP35326 72 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms