RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 FAT4Q6V0I7 4981 aa6.37□□□□□ -1.39
VPS52-220ENST00000493674 Q1T7F1 81 aa6.37□□□□□ -1.39
VPS52-220ENST00000493674 RBM12B-AS1Q9P1G2 102 aa6.36□□□□□ -1.39
VPS52-220ENST00000493674 SEC61GP60059 68 aa6.34□□□□□ -1.39
VPS52-220ENST00000493674 FLGP20930 4061 aaPredicted RBP6.31□□□□□ -1.4
VPS52-220ENST00000493674 ACYP2P14621 99 aa6.3□□□□□ -1.4
VPS52-220ENST00000493674 H1FX-AS1Q4G0G2 97 aa6.29□□□□□ -1.4
VPS52-220ENST00000493674 LCE2AQ5TA79 106 aaPredicted RBP6.28□□□□□ -1.4
VPS52-220ENST00000493674 LCE2CQ5TA81 110 aa6.28□□□□□ -1.4
VPS52-220ENST00000493674 PMAIP1Q13794 54 aa6.27□□□□□ -1.41
VPS52-220ENST00000493674 COA5Q86WW8 74 aa6.26□□□□□ -1.41
VPS52-220ENST00000493674 KRTAP3-3Q9BYR6 98 aa6.2□□□□□ -1.42
VPS52-220ENST00000493674 S4R3F8 94 aa6.2□□□□□ -1.42
VPS52-220ENST00000493674 LCA10Q71F78 164 aa6.19□□□□□ -1.42
VPS52-220ENST00000493674 PSPHP1O15172 72 aa6.17□□□□□ -1.42
VPS52-220ENST00000493674 Q5VV11 94 aa6.16□□□□□ -1.42
VPS52-220ENST00000493674 CHKB-CPT1BH3BT56 60 aa6.15□□□□□ -1.42
VPS52-220ENST00000493674 MT1HP80294 61 aa6.13□□□□□ -1.43
VPS52-220ENST00000493674 KTN1-AS1Q86SY8 53 aa6.11□□□□□ -1.43
VPS52-220ENST00000493674 SPTSSBQ8NFR3 76 aa6.09□□□□□ -1.43
VPS52-220ENST00000493674 PRR15LQ9BU68 103 aa6.08□□□□□ -1.44
VPS52-220ENST00000493674 CSAG1Q6PB30 78 aa6.07□□□□□ -1.44
VPS52-220ENST00000493674 CDC42SE1Q9NRR8 79 aa6.03□□□□□ -1.44
VPS52-220ENST00000493674 A6NN06 94 aa6.02□□□□□ -1.45
VPS52-220ENST00000493674 LINC01558Q9Y6Z2 57 aa6.01□□□□□ -1.45
VPS52-220ENST00000493674 A6NED7 52 aa6□□□□□ -1.45
VPS52-220ENST00000493674 M0R2T5 61 aa6□□□□□ -1.45
VPS52-220ENST00000493674 A8MU10 97 aa5.99□□□□□ -1.45
VPS52-220ENST00000493674 H0YAA0 97 aa5.99□□□□□ -1.45
VPS52-220ENST00000493674 LORP23490 312 aaPredicted RBP5.97□□□□□ -1.45
VPS52-220ENST00000493674 KRTAP10-6P60371 365 aaPredicted RBP5.97□□□□□ -1.45
VPS52-220ENST00000493674 KRTAP9-2Q9BYQ4 174 aa5.96□□□□□ -1.46
VPS52-220ENST00000493674 KRTAP3-2Q9BYR7 98 aa5.96□□□□□ -1.46
VPS52-220ENST00000493674 LCE2DQ5TA82 110 aaPredicted RBP5.91□□□□□ -1.46
VPS52-220ENST00000493674 KRTAP9-8Q9BYQ0 159 aa5.9□□□□□ -1.46
VPS52-220ENST00000493674 ADM2Q7Z4H4 148 aa5.89□□□□□ -1.47
VPS52-220ENST00000493674 A0A1B0GU69 56 aa5.88□□□□□ -1.47
VPS52-220ENST00000493674 MT2AP02795 61 aa5.87□□□□□ -1.47
VPS52-220ENST00000493674 P0C880 135 aa5.87□□□□□ -1.47
VPS52-220ENST00000493674 MT1FP04733 61 aa5.82□□□□□ -1.48
VPS52-220ENST00000493674 A0A1B0GU33 70 aa5.76□□□□□ -1.49
VPS52-220ENST00000493674 CRIPTQ9P021 101 aa5.76□□□□□ -1.49
VPS52-220ENST00000493674 KRTAP10-10P60014 251 aa5.74□□□□□ -1.49
VPS52-220ENST00000493674 KRTAP13-4Q3LI77 160 aa5.74□□□□□ -1.49
VPS52-220ENST00000493674 M0QZ58 72 aa5.72□□□□□ -1.49
VPS52-220ENST00000493674 KRTAP9-6A0A140TA67 174 aa5.71□□□□□ -1.5
VPS52-220ENST00000493674 SPATA8Q6RVD6 105 aa5.7□□□□□ -1.5
VPS52-220ENST00000493674 SPRR2GQ9BYE4 73 aa5.7□□□□□ -1.5
VPS52-220ENST00000493674 KRTAP9-3Q9BYQ3 159 aa5.7□□□□□ -1.5
VPS52-220ENST00000493674 UQCR11O14957 56 aa5.69□□□□□ -1.5
VPS52-220ENST00000493674 KRTAP19-1Q8IUB9 90 aa5.69□□□□□ -1.5
VPS52-220ENST00000493674 R4GN34 69 aa5.68□□□□□ -1.5
VPS52-220ENST00000493674 LINC01554Q52M75 96 aa5.66□□□□□ -1.5
VPS52-220ENST00000493674 CRCT1Q9UGL9 99 aa5.66□□□□□ -1.5
VPS52-220ENST00000493674 PRAC1Q96KF2 57 aa5.65□□□□□ -1.5
VPS52-220ENST00000493674 MIR22HGQ0VDD5 57 aa5.62□□□□□ -1.51
VPS52-220ENST00000493674 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
VPS52-220ENST00000493674 KRTAP19-8Q3LI54 63 aa5.59□□□□□ -1.51
VPS52-220ENST00000493674 USH2AO75445 5202 aa5.58□□□□□ -1.52
VPS52-220ENST00000493674 LCE2BO14633 110 aa5.55□□□□□ -1.52
VPS52-220ENST00000493674 A0A0D9SG42 100 aa5.52□□□□□ -1.53
VPS52-220ENST00000493674 MT1BP07438 61 aa5.51□□□□□ -1.53
VPS52-220ENST00000493674 KRTAP12-1P59990 96 aa5.51□□□□□ -1.53
VPS52-220ENST00000493674 SSPOA2VEC9 5147 aa5.49□□□□□ -1.53
VPS52-220ENST00000493674 KRTAP12-2P59991 146 aa5.47□□□□□ -1.53
VPS52-220ENST00000493674 H3BS24 57 aa5.46□□□□□ -1.54
VPS52-220ENST00000493674 SPINT4Q6UDR6 99 aa5.39□□□□□ -1.55
VPS52-220ENST00000493674 KRTAP25-1Q3LHN0 102 aa5.38□□□□□ -1.55
VPS52-220ENST00000493674 PLAC4Q8WY50 150 aa5.38□□□□□ -1.55
VPS52-220ENST00000493674 KRTAP19-6Q3LI70 58 aa5.37□□□□□ -1.55
VPS52-220ENST00000493674 FCGBPQ9Y6R7 5405 aaPredicted RBP5.35□□□□□ -1.55
VPS52-220ENST00000493674 K7ERS5 55 aa5.34□□□□□ -1.55
VPS52-220ENST00000493674 MT1XP80297 61 aa5.29□□□□□ -1.56
VPS52-220ENST00000493674 ROMO1P60602 79 aa5.28□□□□□ -1.56
VPS52-220ENST00000493674 CAMK2N1Q7Z7J9 78 aa5.28□□□□□ -1.56
VPS52-220ENST00000493674 KRTAP10-5P60370 271 aa5.27□□□□□ -1.57
VPS52-220ENST00000493674 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.26□□□□□ -1.57
VPS52-220ENST00000493674 C10orf95Q9H7T3 257 aa5.22□□□□□ -1.57
VPS52-220ENST00000493674 PRO2289Q9P1D8 64 aa5.19□□□□□ -1.58
VPS52-220ENST00000493674 KRTAP9-7A8MTY7 169 aa5.15□□□□□ -1.59
VPS52-220ENST00000493674 MACF1Q9UPN3 7388 aaKnown RBP5.14□□□□□ -1.59
VPS52-220ENST00000493674 TNP1P09430 55 aa5.04□□□□□ -1.6
VPS52-220ENST00000493674 KRTAP10-7P60409 375 aaPredicted RBP5.04□□□□□ -1.6
VPS52-220ENST00000493674 KRTAP10-12P60413 245 aa5.04□□□□□ -1.6
VPS52-220ENST00000493674 SYNE2Q8WXH0 6885 aaKnown RBP5□□□□□ -1.61
VPS52-220ENST00000493674 KRTAP6-3Q3LI67 103 aa4.99□□□□□ -1.61
VPS52-220ENST00000493674 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
VPS52-220ENST00000493674 KRTAP23-1A1A580 65 aa4.92□□□□□ -1.62
VPS52-220ENST00000493674 LCE3AQ5TA76 89 aa4.88□□□□□ -1.63
VPS52-220ENST00000493674 KRTAP4-8A0A0G2JLE6 195 aa4.87□□□□□ -1.63
VPS52-220ENST00000493674 KRTAP4-8Q9BYQ9 185 aa4.87□□□□□ -1.63
VPS52-220ENST00000493674 NDUFAF8A1L188 74 aa4.86□□□□□ -1.63
VPS52-220ENST00000493674 KRTAP5-9P26371 169 aa4.86□□□□□ -1.63
VPS52-220ENST00000493674 PP632Q6XCG6 107 aa4.84□□□□□ -1.63
VPS52-220ENST00000493674 KMT2DO14686 5537 aa4.84□□□□□ -1.63
VPS52-220ENST00000493674 KRTAP8-1Q8IUC2 63 aa4.82□□□□□ -1.64
VPS52-220ENST00000493674 MUC12Q9UKN1 5478 aa4.81□□□□□ -1.64
VPS52-220ENST00000493674 KRTAP19-7Q3SYF9 63 aa4.73□□□□□ -1.65
VPS52-220ENST00000493674 NEBP20929 6669 aa4.73□□□□□ -1.65
VPS52-220ENST00000493674 MDN1Q9NU22 5596 aa4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms