RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 C7orf65Q6ZTY9 151 aa7.33□□□□□ -1.24
SMPD4-219ENST00000491128 COA5Q86WW8 74 aa7.33□□□□□ -1.24
SMPD4-219ENST00000491128 MUC2Q02817 5179 aa7.32□□□□□ -1.24
SMPD4-219ENST00000491128 HMCN2Q8NDA2 5059 aa7.31□□□□□ -1.24
SMPD4-219ENST00000491128 A6NN06 94 aa7.3□□□□□ -1.24
SMPD4-219ENST00000491128 A6NED7 52 aa7.29□□□□□ -1.24
SMPD4-219ENST00000491128 CDC42SE1Q9NRR8 79 aa7.27□□□□□ -1.25
SMPD4-219ENST00000491128 LINC01558Q9Y6Z2 57 aa7.23□□□□□ -1.25
SMPD4-219ENST00000491128 KRTAP3-1Q9BYR8 98 aa7.19□□□□□ -1.26
SMPD4-219ENST00000491128 DMAC1Q96GE9 116 aa7.17□□□□□ -1.26
SMPD4-219ENST00000491128 KRTAP4-1Q9BYQ7 146 aa7.16□□□□□ -1.26
SMPD4-219ENST00000491128 UBR4Q5T4S7 5183 aa7.16□□□□□ -1.26
SMPD4-219ENST00000491128 ACYP2P14621 99 aa7.13□□□□□ -1.27
SMPD4-219ENST00000491128 RNF213Q63HN8 5207 aa7.11□□□□□ -1.27
SMPD4-219ENST00000491128 MUC17Q685J3 4493 aa7.11□□□□□ -1.27
SMPD4-219ENST00000491128 SEC61BP60468 96 aaKnown RBP7.11□□□□□ -1.27
SMPD4-219ENST00000491128 COX6B2Q6YFQ2 88 aa7.09□□□□□ -1.28
SMPD4-219ENST00000491128 PRAC1Q96KF2 57 aa6.97□□□□□ -1.29
SMPD4-219ENST00000491128 FAT4Q6V0I7 4981 aa6.96□□□□□ -1.29
SMPD4-219ENST00000491128 ADM2Q7Z4H4 148 aa6.95□□□□□ -1.3
SMPD4-219ENST00000491128 LINC01554Q52M75 96 aa6.92□□□□□ -1.3
SMPD4-219ENST00000491128 H1FX-AS1Q4G0G2 97 aa6.91□□□□□ -1.3
SMPD4-219ENST00000491128 KRTAP3-3Q9BYR6 98 aa6.91□□□□□ -1.3
SMPD4-219ENST00000491128 S4R3F8 94 aa6.89□□□□□ -1.31
SMPD4-219ENST00000491128 SPATA8Q6RVD6 105 aa6.88□□□□□ -1.31
SMPD4-219ENST00000491128 A0A1B0GU69 56 aa6.87□□□□□ -1.31
SMPD4-219ENST00000491128 KRTAP19-2Q3LHN2 52 aa6.86□□□□□ -1.31
SMPD4-219ENST00000491128 H3BS24 57 aa6.83□□□□□ -1.32
SMPD4-219ENST00000491128 MIR22HGQ0VDD5 57 aa6.81□□□□□ -1.32
SMPD4-219ENST00000491128 UQCR11O14957 56 aa6.78□□□□□ -1.32
SMPD4-219ENST00000491128 FLGP20930 4061 aaPredicted RBP6.77□□□□□ -1.33
SMPD4-219ENST00000491128 CSAG1Q6PB30 78 aa6.73□□□□□ -1.33
SMPD4-219ENST00000491128 LCE2CQ5TA81 110 aa6.72□□□□□ -1.33
SMPD4-219ENST00000491128 P0C880 135 aa6.66□□□□□ -1.34
SMPD4-219ENST00000491128 KRTAP3-2Q9BYR7 98 aa6.65□□□□□ -1.34
SMPD4-219ENST00000491128 KRTAP10-6P60371 365 aaPredicted RBP6.64□□□□□ -1.35
SMPD4-219ENST00000491128 M0R2T5 61 aa6.6□□□□□ -1.35
SMPD4-219ENST00000491128 MT1HP80294 61 aa6.59□□□□□ -1.36
SMPD4-219ENST00000491128 A0A1B0GU33 70 aa6.58□□□□□ -1.36
SMPD4-219ENST00000491128 H0YAA0 97 aa6.55□□□□□ -1.36
SMPD4-219ENST00000491128 KRTAP13-4Q3LI77 160 aa6.55□□□□□ -1.36
SMPD4-219ENST00000491128 LORP23490 312 aaPredicted RBP6.54□□□□□ -1.36
SMPD4-219ENST00000491128 KRTAP25-1Q3LHN0 102 aa6.52□□□□□ -1.37
SMPD4-219ENST00000491128 ROMO1P60602 79 aa6.48□□□□□ -1.37
SMPD4-219ENST00000491128 A0A0D9SG42 100 aa6.48□□□□□ -1.37
SMPD4-219ENST00000491128 M0QZ58 72 aa6.41□□□□□ -1.38
SMPD4-219ENST00000491128 R4GN34 69 aa6.39□□□□□ -1.39
SMPD4-219ENST00000491128 CRIPTQ9P021 101 aa6.34□□□□□ -1.39
SMPD4-219ENST00000491128 KRTAP9-8Q9BYQ0 159 aa6.34□□□□□ -1.39
SMPD4-219ENST00000491128 MT2AP02795 61 aa6.33□□□□□ -1.4
SMPD4-219ENST00000491128 MT1FP04733 61 aa6.33□□□□□ -1.4
SMPD4-219ENST00000491128 KRTAP10-10P60014 251 aa6.31□□□□□ -1.4
SMPD4-219ENST00000491128 K7ERS5 55 aa6.27□□□□□ -1.41
SMPD4-219ENST00000491128 SPINT4Q6UDR6 99 aa6.27□□□□□ -1.41
SMPD4-219ENST00000491128 LCE2AQ5TA79 106 aaPredicted RBP6.27□□□□□ -1.41
SMPD4-219ENST00000491128 KRTAP12-2P59991 146 aa6.26□□□□□ -1.41
SMPD4-219ENST00000491128 KRTAP12-1P59990 96 aa6.21□□□□□ -1.41
SMPD4-219ENST00000491128 KRTAP19-1Q8IUB9 90 aa6.19□□□□□ -1.42
SMPD4-219ENST00000491128 USH2AO75445 5202 aa6.12□□□□□ -1.43
SMPD4-219ENST00000491128 SPRR2GQ9BYE4 73 aa6.12□□□□□ -1.43
SMPD4-219ENST00000491128 KRTAP9-3Q9BYQ3 159 aa6.09□□□□□ -1.43
SMPD4-219ENST00000491128 C10orf95Q9H7T3 257 aa6.07□□□□□ -1.44
SMPD4-219ENST00000491128 KRTAP15-1Q3LI76 137 aa6.04□□□□□ -1.44
SMPD4-219ENST00000491128 NDUFAF8A1L188 74 aa6.03□□□□□ -1.44
SMPD4-219ENST00000491128 FSIP2Q5CZC0 6907 aa6.02□□□□□ -1.45
SMPD4-219ENST00000491128 CAMK2N1Q7Z7J9 78 aa6□□□□□ -1.45
SMPD4-219ENST00000491128 LCE2BO14633 110 aa5.99□□□□□ -1.45
SMPD4-219ENST00000491128 MT1BP07438 61 aa5.96□□□□□ -1.46
SMPD4-219ENST00000491128 PLAC4Q8WY50 150 aa5.96□□□□□ -1.46
SMPD4-219ENST00000491128 KRTAP19-8Q3LI54 63 aa5.93□□□□□ -1.46
SMPD4-219ENST00000491128 A0A0A0MQY5 61 aa5.88□□□□□ -1.47
SMPD4-219ENST00000491128 SSPOA2VEC9 5147 aa5.78□□□□□ -1.48
SMPD4-219ENST00000491128 MT1XP80297 61 aa5.77□□□□□ -1.49
SMPD4-219ENST00000491128 KRTAP10-5P60370 271 aa5.77□□□□□ -1.49
SMPD4-219ENST00000491128 KMT2DO14686 5537 aa5.68□□□□□ -1.5
SMPD4-219ENST00000491128 TNP1P09430 55 aa5.64□□□□□ -1.51
SMPD4-219ENST00000491128 KRTAP10-7P60409 375 aaPredicted RBP5.61□□□□□ -1.51
SMPD4-219ENST00000491128 LUZP6Q538Z0 58 aa5.61□□□□□ -1.51
SMPD4-219ENST00000491128 LCE2DQ5TA82 110 aaPredicted RBP5.59□□□□□ -1.52
SMPD4-219ENST00000491128 PRO2289Q9P1D8 64 aa5.59□□□□□ -1.52
SMPD4-219ENST00000491128 KRTAP9-2Q9BYQ4 174 aa5.52□□□□□ -1.53
SMPD4-219ENST00000491128 FCGBPQ9Y6R7 5405 aaPredicted RBP5.51□□□□□ -1.53
SMPD4-219ENST00000491128 LCE3AQ5TA76 89 aa5.51□□□□□ -1.53
SMPD4-219ENST00000491128 KRTAP19-6Q3LI70 58 aa5.48□□□□□ -1.53
SMPD4-219ENST00000491128 KRTAP4-8A0A0G2JLE6 195 aa5.46□□□□□ -1.54
SMPD4-219ENST00000491128 KRTAP10-12P60413 245 aa5.46□□□□□ -1.54
SMPD4-219ENST00000491128 KRTAP4-8Q9BYQ9 185 aa5.46□□□□□ -1.54
SMPD4-219ENST00000491128 PP632Q6XCG6 107 aa5.36□□□□□ -1.55
SMPD4-219ENST00000491128 MACF1Q9UPN3 7388 aaKnown RBP5.35□□□□□ -1.55
SMPD4-219ENST00000491128 CRCT1Q9UGL9 99 aa5.3□□□□□ -1.56
SMPD4-219ENST00000491128 KRTAP23-1A1A580 65 aa5.28□□□□□ -1.56
SMPD4-219ENST00000491128 SYNE2Q8WXH0 6885 aaKnown RBP5.28□□□□□ -1.56
SMPD4-219ENST00000491128 KRTAP19-5Q3LI72 72 aa5.26□□□□□ -1.57
SMPD4-219ENST00000491128 KRTAP8-1Q8IUC2 63 aa5.26□□□□□ -1.57
SMPD4-219ENST00000491128 KRTAP12-3P60328 96 aa5.23□□□□□ -1.57
SMPD4-219ENST00000491128 MUC12Q9UKN1 5478 aa5.19□□□□□ -1.58
SMPD4-219ENST00000491128 SPRR5A0A1B0GTR4 108 aa5.17□□□□□ -1.58
SMPD4-219ENST00000491128 KRTAP19-7Q3SYF9 63 aa5.15□□□□□ -1.59
SMPD4-219ENST00000491128 KRTAP9-6A0A140TA67 174 aa5.04□□□□□ -1.6
SMPD4-219ENST00000491128 MT1EP04732 61 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms