RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 SERP1Q9Y6X1 66 aa10.41□□□□□ -0.74
SND1-214ENST00000489417 CHKB-CPT1BH3BT56 60 aa10.36□□□□□ -0.75
SND1-214ENST00000489417 MUC2Q02817 5179 aa10.36□□□□□ -0.75
SND1-214ENST00000489417 S4R3F8 94 aa10.33□□□□□ -0.76
SND1-214ENST00000489417 RPS28P62857 69 aaKnown RBP10.28□□□□□ -0.76
SND1-214ENST00000489417 LCA10Q71F78 164 aa10.27□□□□□ -0.77
SND1-214ENST00000489417 LCE2CQ5TA81 110 aa10.26□□□□□ -0.77
SND1-214ENST00000489417 SPTSSBQ8NFR3 76 aa10.2□□□□□ -0.78
SND1-214ENST00000489417 LCE2AQ5TA79 106 aaPredicted RBP10.16□□□□□ -0.78
SND1-214ENST00000489417 CSAG1Q6PB30 78 aa10.11□□□□□ -0.79
SND1-214ENST00000489417 FLGP20930 4061 aaPredicted RBP10.11□□□□□ -0.79
SND1-214ENST00000489417 SMIM26A0A096LP01 95 aa10.1□□□□□ -0.79
SND1-214ENST00000489417 FAT4Q6V0I7 4981 aa10.08□□□□□ -0.8
SND1-214ENST00000489417 MT1HP80294 61 aa10.07□□□□□ -0.8
SND1-214ENST00000489417 M0R2T5 61 aa9.98□□□□□ -0.81
SND1-214ENST00000489417 LINC01558Q9Y6Z2 57 aa9.96□□□□□ -0.82
SND1-214ENST00000489417 V9GYY9 64 aa9.95□□□□□ -0.82
SND1-214ENST00000489417 Q1T7F1 81 aa9.94□□□□□ -0.82
SND1-214ENST00000489417 LORP23490 312 aaPredicted RBP9.9□□□□□ -0.82
SND1-214ENST00000489417 SEC61GP60059 68 aa9.87□□□□□ -0.83
SND1-214ENST00000489417 A0A1B0GU69 56 aa9.86□□□□□ -0.83
SND1-214ENST00000489417 H0YAA0 97 aa9.86□□□□□ -0.83
SND1-214ENST00000489417 ADM2Q7Z4H4 148 aa9.83□□□□□ -0.84
SND1-214ENST00000489417 PRR15LQ9BU68 103 aa9.83□□□□□ -0.84
SND1-214ENST00000489417 PSPHP1O15172 72 aa9.78□□□□□ -0.84
SND1-214ENST00000489417 KRTAP10-6P60371 365 aaPredicted RBP9.77□□□□□ -0.85
SND1-214ENST00000489417 P0C880 135 aa9.74□□□□□ -0.85
SND1-214ENST00000489417 Q5VV11 94 aa9.7□□□□□ -0.86
SND1-214ENST00000489417 KRTAP9-8Q9BYQ0 159 aa9.67□□□□□ -0.86
SND1-214ENST00000489417 MT2AP02795 61 aa9.65□□□□□ -0.87
SND1-214ENST00000489417 A0A1B0GU33 70 aa9.63□□□□□ -0.87
SND1-214ENST00000489417 MT1FP04733 61 aa9.58□□□□□ -0.88
SND1-214ENST00000489417 KRTAP10-10P60014 251 aa9.56□□□□□ -0.88
SND1-214ENST00000489417 UQCR11O14957 56 aa9.53□□□□□ -0.88
SND1-214ENST00000489417 CRIPTQ9P021 101 aa9.51□□□□□ -0.89
SND1-214ENST00000489417 A6NED7 52 aa9.49□□□□□ -0.89
SND1-214ENST00000489417 R4GN34 69 aa9.49□□□□□ -0.89
SND1-214ENST00000489417 M0QZ58 72 aa9.48□□□□□ -0.89
SND1-214ENST00000489417 KRTAP13-4Q3LI77 160 aa9.48□□□□□ -0.89
SND1-214ENST00000489417 SPATA8Q6RVD6 105 aa9.46□□□□□ -0.9
SND1-214ENST00000489417 KRTAP9-2Q9BYQ4 174 aa9.46□□□□□ -0.9
SND1-214ENST00000489417 MIR22HGQ0VDD5 57 aa9.4□□□□□ -0.9
SND1-214ENST00000489417 SPRR2GQ9BYE4 73 aa9.35□□□□□ -0.91
SND1-214ENST00000489417 KRTAP19-1Q8IUB9 90 aa9.33□□□□□ -0.92
SND1-214ENST00000489417 KRTAP9-3Q9BYQ3 159 aa9.33□□□□□ -0.92
SND1-214ENST00000489417 A8MU10 97 aa9.31□□□□□ -0.92
SND1-214ENST00000489417 LINC01554Q52M75 96 aa9.31□□□□□ -0.92
SND1-214ENST00000489417 A0A0D9SG42 100 aa9.3□□□□□ -0.92
SND1-214ENST00000489417 CDC42SE1Q9NRR8 79 aa9.3□□□□□ -0.92
SND1-214ENST00000489417 BRK1Q8WUW1 75 aa9.23□□□□□ -0.93
SND1-214ENST00000489417 A6NN06 94 aa9.14□□□□□ -0.95
SND1-214ENST00000489417 KRTAP19-8Q3LI54 63 aa9.14□□□□□ -0.95
SND1-214ENST00000489417 KRTAP9-6A0A140TA67 174 aa9.13□□□□□ -0.95
SND1-214ENST00000489417 KRTAP12-1P59990 96 aa9.12□□□□□ -0.95
SND1-214ENST00000489417 SPINT4Q6UDR6 99 aa9.1□□□□□ -0.95
SND1-214ENST00000489417 KRTAP12-2P59991 146 aa9.07□□□□□ -0.96
SND1-214ENST00000489417 K7ERS5 55 aa9.03□□□□□ -0.96
SND1-214ENST00000489417 MT1BP07438 61 aa9.03□□□□□ -0.96
SND1-214ENST00000489417 PLAC4Q8WY50 150 aa9.01□□□□□ -0.97
SND1-214ENST00000489417 FSIP2Q5CZC0 6907 aa9□□□□□ -0.97
SND1-214ENST00000489417 CRCT1Q9UGL9 99 aa8.95□□□□□ -0.98
SND1-214ENST00000489417 PRO0628Q9UI54 55 aa8.92□□□□□ -0.98
SND1-214ENST00000489417 CAMK2N1Q7Z7J9 78 aa8.88□□□□□ -0.99
SND1-214ENST00000489417 USH2AO75445 5202 aa8.85□□□□□ -0.99
SND1-214ENST00000489417 PMAIP1Q13794 54 aa8.71□□□□□ -1.01
SND1-214ENST00000489417 MT1XP80297 61 aa8.69□□□□□ -1.02
SND1-214ENST00000489417 KRTAP10-5P60370 271 aa8.66□□□□□ -1.02
SND1-214ENST00000489417 C10orf95Q9H7T3 257 aa8.64□□□□□ -1.03
SND1-214ENST00000489417 PRO2289Q9P1D8 64 aa8.63□□□□□ -1.03
SND1-214ENST00000489417 ROMO1P60602 79 aa8.62□□□□□ -1.03
SND1-214ENST00000489417 KRTAP19-6Q3LI70 58 aa8.61□□□□□ -1.03
SND1-214ENST00000489417 SSPOA2VEC9 5147 aa8.58□□□□□ -1.04
SND1-214ENST00000489417 H3BS24 57 aa8.54□□□□□ -1.04
SND1-214ENST00000489417 LOC100996750A0A140TA64 210 aa8.45□□□□□ -1.06
SND1-214ENST00000489417 KRTAP4-6Q9BYQ5 205 aa8.45□□□□□ -1.06
SND1-214ENST00000489417 TNP1P09430 55 aa8.41□□□□□ -1.06
SND1-214ENST00000489417 KRTAP25-1Q3LHN0 102 aa8.39□□□□□ -1.07
SND1-214ENST00000489417 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.32□□□□□ -1.08
SND1-214ENST00000489417 KRTAP10-7P60409 375 aaPredicted RBP8.32□□□□□ -1.08
SND1-214ENST00000489417 KTN1-AS1Q86SY8 53 aa8.3□□□□□ -1.08
SND1-214ENST00000489417 FCGBPQ9Y6R7 5405 aaPredicted RBP8.3□□□□□ -1.08
SND1-214ENST00000489417 KRTAP10-12P60413 245 aa8.24□□□□□ -1.09
SND1-214ENST00000489417 KRTAP9-7A8MTY7 169 aa8.22□□□□□ -1.09
SND1-214ENST00000489417 PRAC1Q96KF2 57 aa8.2□□□□□ -1.1
SND1-214ENST00000489417 MACF1Q9UPN3 7388 aaKnown RBP8.1□□□□□ -1.11
SND1-214ENST00000489417 KRTAP23-1A1A580 65 aa8.1□□□□□ -1.11
SND1-214ENST00000489417 LCE3AQ5TA76 89 aa8.1□□□□□ -1.11
SND1-214ENST00000489417 PP632Q6XCG6 107 aa8.05□□□□□ -1.12
SND1-214ENST00000489417 KRTAP4-8A0A0G2JLE6 195 aa8.03□□□□□ -1.12
SND1-214ENST00000489417 KRTAP4-8Q9BYQ9 185 aa8.03□□□□□ -1.12
SND1-214ENST00000489417 SYNE2Q8WXH0 6885 aaKnown RBP7.99□□□□□ -1.13
SND1-214ENST00000489417 KRTAP8-1Q8IUC2 63 aa7.92□□□□□ -1.14
SND1-214ENST00000489417 KMT2DO14686 5537 aa7.88□□□□□ -1.15
SND1-214ENST00000489417 SVIPQ8NHG7 77 aa7.85□□□□□ -1.15
SND1-214ENST00000489417 KRTAP19-5Q3LI72 72 aa7.81□□□□□ -1.16
SND1-214ENST00000489417 KRTAP6-3Q3LI67 103 aa7.78□□□□□ -1.16
SND1-214ENST00000489417 KRTAP12-3P60328 96 aa7.78□□□□□ -1.16
SND1-214ENST00000489417 KRTAP4-12Q9BQ66 201 aa7.78□□□□□ -1.16
SND1-214ENST00000489417 KRTAP19-7Q3SYF9 63 aa7.75□□□□□ -1.17
SND1-214ENST00000489417 MT1EP04732 61 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms