RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 Q5VV11 94 aa5.25□□□□□ -1.57
COL12A1-208ENST00000486533 PRR26Q8N8Z3 221 aa5.25□□□□□ -1.57
COL12A1-208ENST00000486533 RNF213Q63HN8 5207 aa5.23□□□□□ -1.57
COL12A1-208ENST00000486533 LINC01558Q9Y6Z2 57 aa5.23□□□□□ -1.57
COL12A1-208ENST00000486533 A6NED7 52 aa5.21□□□□□ -1.58
COL12A1-208ENST00000486533 KRTAP1-4P0C5Y4 121 aa5.21□□□□□ -1.58
COL12A1-208ENST00000486533 ACYP2P14621 99 aa5.21□□□□□ -1.58
COL12A1-208ENST00000486533 PMAIP1Q13794 54 aa5.19□□□□□ -1.58
COL12A1-208ENST00000486533 ATP11AUNQ6ZP68 121 aa5.19□□□□□ -1.58
COL12A1-208ENST00000486533 LINC00313P59037 77 aa5.18□□□□□ -1.58
COL12A1-208ENST00000486533 CDC42SE1Q9NRR8 79 aa5.17□□□□□ -1.58
COL12A1-208ENST00000486533 LPAP08519 4548 aa5.17□□□□□ -1.58
COL12A1-208ENST00000486533 HRES1P13985 223 aa5.16□□□□□ -1.58
COL12A1-208ENST00000486533 ANAPC11Q9NYG5 84 aa5.16□□□□□ -1.58
COL12A1-208ENST00000486533 KRTAP13-3Q3SY46 172 aa5.15□□□□□ -1.59
COL12A1-208ENST00000486533 SPAG11AQ6PDA7 123 aa5.14□□□□□ -1.59
COL12A1-208ENST00000486533 DMAC1Q96GE9 116 aa5.13□□□□□ -1.59
COL12A1-208ENST00000486533 A0A087X002 238 aa5.12□□□□□ -1.59
COL12A1-208ENST00000486533 NOTCH2NLQ7Z3S9 236 aa5.12□□□□□ -1.59
COL12A1-208ENST00000486533 TYMSOSQ8TAI1 123 aa5.12□□□□□ -1.59
COL12A1-208ENST00000486533 IGKV2-30P06310 120 aa5.11□□□□□ -1.59
COL12A1-208ENST00000486533 Q5W150 140 aa5.11□□□□□ -1.59
COL12A1-208ENST00000486533 SPTSSBQ8NFR3 76 aa5.1□□□□□ -1.59
COL12A1-208ENST00000486533 KRTAP9-8Q9BYQ0 159 aa5.1□□□□□ -1.59
COL12A1-208ENST00000486533 KTN1-AS1Q86SY8 53 aa5.09□□□□□ -1.59
COL12A1-208ENST00000486533 SPINK1P00995 79 aa5.08□□□□□ -1.6
COL12A1-208ENST00000486533 RPS29P62273 56 aaKnown RBP5.08□□□□□ -1.6
COL12A1-208ENST00000486533 KRTAP13-2Q52LG2 175 aa5.08□□□□□ -1.6
COL12A1-208ENST00000486533 LCA10Q71F78 164 aa5.07□□□□□ -1.6
COL12A1-208ENST00000486533 LINC00304Q8N9R0 145 aa5.06□□□□□ -1.6
COL12A1-208ENST00000486533 MUC2Q02817 5179 aa5.05□□□□□ -1.6
COL12A1-208ENST00000486533 A0A1B0GU69 56 aa5.05□□□□□ -1.6
COL12A1-208ENST00000486533 SEC61GP60059 68 aa5.05□□□□□ -1.6
COL12A1-208ENST00000486533 RETNLBQ9BQ08 111 aa5.04□□□□□ -1.6
COL12A1-208ENST00000486533 A6NN06 94 aa5.03□□□□□ -1.6
COL12A1-208ENST00000486533 KRTAP16-1A8MUX0 517 aa5.03□□□□□ -1.6
COL12A1-208ENST00000486533 C7orf65Q6ZTY9 151 aa5.02□□□□□ -1.61
COL12A1-208ENST00000486533 IGKV2D-30A0A075B6S6 120 aa5□□□□□ -1.61
COL12A1-208ENST00000486533 SPINK7P58062 85 aa5□□□□□ -1.61
COL12A1-208ENST00000486533 KRTAP23-1A1A580 65 aa4.99□□□□□ -1.61
COL12A1-208ENST00000486533 UQCR11O14957 56 aa4.99□□□□□ -1.61
COL12A1-208ENST00000486533 TPRXLQ17RH7 258 aa4.97□□□□□ -1.61
COL12A1-208ENST00000486533 KRTAP15-1Q3LI76 137 aa4.97□□□□□ -1.61
COL12A1-208ENST00000486533 A8MU10 97 aa4.96□□□□□ -1.62
COL12A1-208ENST00000486533 SPATA8Q6RVD6 105 aa4.95□□□□□ -1.62
COL12A1-208ENST00000486533 MIR22HGQ0VDD5 57 aa4.94□□□□□ -1.62
COL12A1-208ENST00000486533 FAT4Q6V0I7 4981 aa4.89□□□□□ -1.63
COL12A1-208ENST00000486533 RBM12B-AS1Q9P1G2 102 aa4.89□□□□□ -1.63
COL12A1-208ENST00000486533 A8MUU9 505 aa4.87□□□□□ -1.63
COL12A1-208ENST00000486533 C20orf166-AS1Q96NR2 134 aa4.87□□□□□ -1.63
COL12A1-208ENST00000486533 MUC17Q685J3 4493 aa4.84□□□□□ -1.63
COL12A1-208ENST00000486533 SEC61BP60468 96 aaKnown RBP4.82□□□□□ -1.64
COL12A1-208ENST00000486533 C9orf92A6NGG3 77 aa4.78□□□□□ -1.64
COL12A1-208ENST00000486533 K7ERS5 55 aa4.77□□□□□ -1.65
COL12A1-208ENST00000486533 KRTAP4-1Q9BYQ7 146 aa4.77□□□□□ -1.65
COL12A1-208ENST00000486533 COX6B2Q6YFQ2 88 aa4.75□□□□□ -1.65
COL12A1-208ENST00000486533 A0A1B0GU33 70 aa4.74□□□□□ -1.65
COL12A1-208ENST00000486533 H1FX-AS1Q4G0G2 97 aa4.73□□□□□ -1.65
COL12A1-208ENST00000486533 LINC01554Q52M75 96 aa4.7□□□□□ -1.66
COL12A1-208ENST00000486533 PRAC1Q96KF2 57 aa4.69□□□□□ -1.66
COL12A1-208ENST00000486533 H0YAA0 97 aa4.66□□□□□ -1.66
COL12A1-208ENST00000486533 RPL37P61927 97 aaKnown RBP4.65□□□□□ -1.67
COL12A1-208ENST00000486533 KRTAP19-2Q3LHN2 52 aa4.63□□□□□ -1.67
COL12A1-208ENST00000486533 ADM2Q7Z4H4 148 aa4.63□□□□□ -1.67
COL12A1-208ENST00000486533 CSAG1Q6PB30 78 aa4.62□□□□□ -1.67
COL12A1-208ENST00000486533 MT1HP80294 61 aa4.61□□□□□ -1.67
COL12A1-208ENST00000486533 S4R3F8 94 aa4.59□□□□□ -1.67
COL12A1-208ENST00000486533 M0R2T5 61 aa4.57□□□□□ -1.68
COL12A1-208ENST00000486533 KRTAP25-1Q3LHN0 102 aa4.57□□□□□ -1.68
COL12A1-208ENST00000486533 FSIP2Q5CZC0 6907 aa4.54□□□□□ -1.68
COL12A1-208ENST00000486533 KRTAP10-6P60371 365 aaPredicted RBP4.53□□□□□ -1.68
COL12A1-208ENST00000486533 ROMO1P60602 79 aa4.53□□□□□ -1.69
COL12A1-208ENST00000486533 CRCT1Q9UGL9 99 aa4.51□□□□□ -1.69
COL12A1-208ENST00000486533 FLGP20930 4061 aaPredicted RBP4.49□□□□□ -1.69
COL12A1-208ENST00000486533 M0QZ58 72 aa4.44□□□□□ -1.7
COL12A1-208ENST00000486533 A0A0D9SG42 100 aa4.41□□□□□ -1.7
COL12A1-208ENST00000486533 LCE1AQ5T7P2 110 aa4.4□□□□□ -1.71
COL12A1-208ENST00000486533 CRIPTQ9P021 101 aa4.39□□□□□ -1.71
COL12A1-208ENST00000486533 KRTAP13-4Q3LI77 160 aa4.37□□□□□ -1.71
COL12A1-208ENST00000486533 P0C880 135 aa4.36□□□□□ -1.71
COL12A1-208ENST00000486533 SPINT4Q6UDR6 99 aa4.31□□□□□ -1.72
COL12A1-208ENST00000486533 KRTAP12-1P59990 96 aa4.3□□□□□ -1.72
COL12A1-208ENST00000486533 MT2AP02795 61 aa4.28□□□□□ -1.72
COL12A1-208ENST00000486533 KRTAP12-2P59991 146 aa4.28□□□□□ -1.72
COL12A1-208ENST00000486533 USH2AO75445 5202 aa4.27□□□□□ -1.73
COL12A1-208ENST00000486533 SSPOA2VEC9 5147 aa4.26□□□□□ -1.73
COL12A1-208ENST00000486533 MT1FP04733 61 aa4.26□□□□□ -1.73
COL12A1-208ENST00000486533 KRTAP10-10P60014 251 aa4.26□□□□□ -1.73
COL12A1-208ENST00000486533 R4GN34 69 aa4.26□□□□□ -1.73
COL12A1-208ENST00000486533 C10orf95Q9H7T3 257 aa4.17□□□□□ -1.74
COL12A1-208ENST00000486533 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.74
COL12A1-208ENST00000486533 PP632Q6XCG6 107 aa4.12□□□□□ -1.75
COL12A1-208ENST00000486533 KRTAP2-2Q9BYT5 123 aa4.12□□□□□ -1.75
COL12A1-208ENST00000486533 KRTAP10-7P60409 375 aaPredicted RBP4.09□□□□□ -1.75
COL12A1-208ENST00000486533 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.06□□□□□ -1.76
COL12A1-208ENST00000486533 CAMK2N1Q7Z7J9 78 aa4.06□□□□□ -1.76
COL12A1-208ENST00000486533 KRTAP19-6Q3LI70 58 aa4.06□□□□□ -1.76
COL12A1-208ENST00000486533 KRTAP5-11Q6L8G4 156 aa4.05□□□□□ -1.76
COL12A1-208ENST00000486533 NDUFAF8A1L188 74 aa4□□□□□ -1.77
COL12A1-208ENST00000486533 MACF1Q9UPN3 7388 aaKnown RBP3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms