RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 LRP2P98164 4655 aa13.53□□□□□ -0.24
SHOX2-204ENST00000483851 KRTAP3-1Q9BYR8 98 aa13.52□□□□□ -0.25
SHOX2-204ENST00000483851 LPAP08519 4548 aa13.52□□□□□ -0.25
SHOX2-204ENST00000483851 A0A1B0GU69 56 aa13.46□□□□□ -0.25
SHOX2-204ENST00000483851 HERC1Q15751 4861 aa13.42□□□□□ -0.26
SHOX2-204ENST00000483851 SPTSSBQ8NFR3 76 aa13.33□□□□□ -0.27
SHOX2-204ENST00000483851 RBM12B-AS1Q9P1G2 102 aa13.31□□□□□ -0.28
SHOX2-204ENST00000483851 PMAIP1Q13794 54 aa13.26□□□□□ -0.29
SHOX2-204ENST00000483851 SPATA8Q6RVD6 105 aa13.24□□□□□ -0.29
SHOX2-204ENST00000483851 H1FX-AS1Q4G0G2 97 aa13.22□□□□□ -0.29
SHOX2-204ENST00000483851 MUC17Q685J3 4493 aa13.2□□□□□ -0.3
SHOX2-204ENST00000483851 UQCR11O14957 56 aa13.19□□□□□ -0.3
SHOX2-204ENST00000483851 A6NN06 94 aa13.19□□□□□ -0.3
SHOX2-204ENST00000483851 KRTAP4-1Q9BYQ7 146 aa13.15□□□□□ -0.3
SHOX2-204ENST00000483851 HMCN2Q8NDA2 5059 aa13.15□□□□□ -0.3
SHOX2-204ENST00000483851 SEC61GP60059 68 aa13.12□□□□□ -0.31
SHOX2-204ENST00000483851 S4R3F8 94 aa13.12□□□□□ -0.31
SHOX2-204ENST00000483851 MIR22HGQ0VDD5 57 aa13.12□□□□□ -0.31
SHOX2-204ENST00000483851 KRTAP3-3Q9BYR6 98 aa13.04□□□□□ -0.32
SHOX2-204ENST00000483851 KTN1-AS1Q86SY8 53 aa12.94□□□□□ -0.34
SHOX2-204ENST00000483851 KRTAP19-2Q3LHN2 52 aa12.89□□□□□ -0.35
SHOX2-204ENST00000483851 A0A1B0GU33 70 aa12.87□□□□□ -0.35
SHOX2-204ENST00000483851 H0YAA0 97 aa12.87□□□□□ -0.35
SHOX2-204ENST00000483851 CSAG1Q6PB30 78 aa12.85□□□□□ -0.35
SHOX2-204ENST00000483851 KRTAP10-6P60371 365 aaPredicted RBP12.73□□□□□ -0.37
SHOX2-204ENST00000483851 KRTAP3-2Q9BYR7 98 aa12.7□□□□□ -0.38
SHOX2-204ENST00000483851 MUC2Q02817 5179 aa12.61□□□□□ -0.39
SHOX2-204ENST00000483851 UBR4Q5T4S7 5183 aa12.6□□□□□ -0.39
SHOX2-204ENST00000483851 ADM2Q7Z4H4 148 aa12.53□□□□□ -0.4
SHOX2-204ENST00000483851 LCE2CQ5TA81 110 aa12.52□□□□□ -0.41
SHOX2-204ENST00000483851 FLGP20930 4061 aaPredicted RBP12.5□□□□□ -0.41
SHOX2-204ENST00000483851 KRTAP13-4Q3LI77 160 aa12.48□□□□□ -0.41
SHOX2-204ENST00000483851 P0C880 135 aa12.47□□□□□ -0.41
SHOX2-204ENST00000483851 PRAC1Q96KF2 57 aa12.42□□□□□ -0.42
SHOX2-204ENST00000483851 RNF213Q63HN8 5207 aa12.42□□□□□ -0.42
SHOX2-204ENST00000483851 K7ERS5 55 aa12.29□□□□□ -0.44
SHOX2-204ENST00000483851 M0QZ58 72 aa12.28□□□□□ -0.44
SHOX2-204ENST00000483851 MT1HP80294 61 aa12.26□□□□□ -0.45
SHOX2-204ENST00000483851 A0A0D9SG42 100 aa12.21□□□□□ -0.46
SHOX2-204ENST00000483851 M0R2T5 61 aa12.15□□□□□ -0.46
SHOX2-204ENST00000483851 R4GN34 69 aa12.11□□□□□ -0.47
SHOX2-204ENST00000483851 FAT4Q6V0I7 4981 aa12.09□□□□□ -0.47
SHOX2-204ENST00000483851 CRIPTQ9P021 101 aa12.06□□□□□ -0.48
SHOX2-204ENST00000483851 KRTAP12-2P59991 146 aa12.02□□□□□ -0.48
SHOX2-204ENST00000483851 LORP23490 312 aaPredicted RBP12.02□□□□□ -0.49
SHOX2-204ENST00000483851 KRTAP12-1P59990 96 aa12.01□□□□□ -0.49
SHOX2-204ENST00000483851 ROMO1P60602 79 aa12.01□□□□□ -0.49
SHOX2-204ENST00000483851 KRTAP25-1Q3LHN0 102 aa11.93□□□□□ -0.5
SHOX2-204ENST00000483851 LINC01554Q52M75 96 aa11.89□□□□□ -0.51
SHOX2-204ENST00000483851 SPINT4Q6UDR6 99 aa11.85□□□□□ -0.51
SHOX2-204ENST00000483851 KRTAP9-8Q9BYQ0 159 aa11.84□□□□□ -0.51
SHOX2-204ENST00000483851 MT2AP02795 61 aa11.8□□□□□ -0.52
SHOX2-204ENST00000483851 MT1FP04733 61 aa11.72□□□□□ -0.53
SHOX2-204ENST00000483851 KRTAP10-10P60014 251 aa11.72□□□□□ -0.53
SHOX2-204ENST00000483851 SPRR2GQ9BYE4 73 aa11.72□□□□□ -0.53
SHOX2-204ENST00000483851 LCE2AQ5TA79 106 aaPredicted RBP11.7□□□□□ -0.54
SHOX2-204ENST00000483851 KRTAP19-1Q8IUB9 90 aa11.61□□□□□ -0.55
SHOX2-204ENST00000483851 C10orf95Q9H7T3 257 aa11.47□□□□□ -0.57
SHOX2-204ENST00000483851 KRTAP9-3Q9BYQ3 159 aa11.41□□□□□ -0.58
SHOX2-204ENST00000483851 KRTAP19-8Q3LI54 63 aa11.38□□□□□ -0.59
SHOX2-204ENST00000483851 CAMK2N1Q7Z7J9 78 aa11.35□□□□□ -0.59
SHOX2-204ENST00000483851 PLAC4Q8WY50 150 aa11.34□□□□□ -0.59
SHOX2-204ENST00000483851 MT1BP07438 61 aa11.15□□□□□ -0.62
SHOX2-204ENST00000483851 LCE2BO14633 110 aa11.03□□□□□ -0.64
SHOX2-204ENST00000483851 TNP1P09430 55 aa10.87□□□□□ -0.67
SHOX2-204ENST00000483851 MT1XP80297 61 aa10.83□□□□□ -0.68
SHOX2-204ENST00000483851 PP632Q6XCG6 107 aa10.83□□□□□ -0.68
SHOX2-204ENST00000483851 KRTAP15-1Q3LI76 137 aa10.82□□□□□ -0.68
SHOX2-204ENST00000483851 KRTAP10-5P60370 271 aa10.81□□□□□ -0.68
SHOX2-204ENST00000483851 KRTAP9-2Q9BYQ4 174 aa10.78□□□□□ -0.68
SHOX2-204ENST00000483851 PRO2289Q9P1D8 64 aa10.78□□□□□ -0.68
SHOX2-204ENST00000483851 LCE2DQ5TA82 110 aaPredicted RBP10.76□□□□□ -0.69
SHOX2-204ENST00000483851 KRTAP23-1A1A580 65 aa10.68□□□□□ -0.7
SHOX2-204ENST00000483851 USH2AO75445 5202 aa10.58□□□□□ -0.72
SHOX2-204ENST00000483851 FSIP2Q5CZC0 6907 aa10.42□□□□□ -0.74
SHOX2-204ENST00000483851 KRTAP19-6Q3LI70 58 aa10.4□□□□□ -0.75
SHOX2-204ENST00000483851 KRTAP10-7P60409 375 aaPredicted RBP10.36□□□□□ -0.75
SHOX2-204ENST00000483851 KRTAP10-12P60413 245 aa10.34□□□□□ -0.75
SHOX2-204ENST00000483851 LCE3AQ5TA76 89 aa10.3□□□□□ -0.76
SHOX2-204ENST00000483851 CRCT1Q9UGL9 99 aa10.25□□□□□ -0.77
SHOX2-204ENST00000483851 SSPOA2VEC9 5147 aa10.25□□□□□ -0.77
SHOX2-204ENST00000483851 KRTAP9-6A0A140TA67 174 aa10.23□□□□□ -0.77
SHOX2-204ENST00000483851 NDUFAF8A1L188 74 aa10.23□□□□□ -0.77
SHOX2-204ENST00000483851 KRTAP8-1Q8IUC2 63 aa10.19□□□□□ -0.78
SHOX2-204ENST00000483851 H3BS24 57 aa10.13□□□□□ -0.79
SHOX2-204ENST00000483851 SPRR5A0A1B0GTR4 108 aa10.02□□□□□ -0.8
SHOX2-204ENST00000483851 KRTAP12-3P60328 96 aa9.93□□□□□ -0.82
SHOX2-204ENST00000483851 KRTAP4-8A0A0G2JLE6 195 aa9.89□□□□□ -0.83
SHOX2-204ENST00000483851 KRTAP4-8Q9BYQ9 185 aa9.89□□□□□ -0.83
SHOX2-204ENST00000483851 FCGBPQ9Y6R7 5405 aaPredicted RBP9.87□□□□□ -0.83
SHOX2-204ENST00000483851 LUZP6Q538Z0 58 aa9.83□□□□□ -0.84
SHOX2-204ENST00000483851 KRTAP19-5Q3LI72 72 aa9.79□□□□□ -0.84
SHOX2-204ENST00000483851 KMT2DO14686 5537 aa9.68□□□□□ -0.86
SHOX2-204ENST00000483851 KRTAP19-7Q3SYF9 63 aa9.66□□□□□ -0.86
SHOX2-204ENST00000483851 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.55□□□□□ -0.88
SHOX2-204ENST00000483851 MT1EP04732 61 aa9.49□□□□□ -0.89
SHOX2-204ENST00000483851 KRTAP19-4Q3LI73 84 aa9.47□□□□□ -0.89
SHOX2-204ENST00000483851 MACF1Q9UPN3 7388 aaKnown RBP9.47□□□□□ -0.89
SHOX2-204ENST00000483851 MT1LQ93083 61 aa9.32□□□□□ -0.92
SHOX2-204ENST00000483851 LCE3CQ5T5A8 94 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms