RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 H1FX-AS1Q4G0G2 97 aa7.56□□□□□ -1.2
C9orf3-217ENST00000479161 SVIPQ8NHG7 77 aa7.56□□□□□ -1.2
C9orf3-217ENST00000479161 MP68P56378 58 aa7.52□□□□□ -1.21
C9orf3-217ENST00000479161 SMIM26A0A096LP01 95 aa7.51□□□□□ -1.21
C9orf3-217ENST00000479161 TRAV22A0A0B4J277 110 aa7.48□□□□□ -1.21
C9orf3-217ENST00000479161 MT2AP02795 61 aa7.47□□□□□ -1.21
C9orf3-217ENST00000479161 C4orf26Q17RF5 130 aa7.47□□□□□ -1.21
C9orf3-217ENST00000479161 CYP4F30PQ9H0H9 118 aa7.46□□□□□ -1.22
C9orf3-217ENST00000479161 LOC101927531A0A1B0GV80 90 aa7.45□□□□□ -1.22
C9orf3-217ENST00000479161 H0Y9P7 68 aa7.43□□□□□ -1.22
C9orf3-217ENST00000479161 SPANXA2-OT1Q8N9U9 137 aa7.42□□□□□ -1.22
C9orf3-217ENST00000479161 MT1FP04733 61 aa7.4□□□□□ -1.22
C9orf3-217ENST00000479161 KRTAP3-1Q9BYR8 98 aa7.4□□□□□ -1.22
C9orf3-217ENST00000479161 C1orf64Q8NEQ6 169 aa7.39□□□□□ -1.23
C9orf3-217ENST00000479161 LINC00208Q96KT6 92 aa7.39□□□□□ -1.23
C9orf3-217ENST00000479161 KRTAP10-10P60014 251 aa7.38□□□□□ -1.23
C9orf3-217ENST00000479161 KRTAP9-3Q9BYQ3 159 aa7.36□□□□□ -1.23
C9orf3-217ENST00000479161 S4R3F8 94 aa7.3□□□□□ -1.24
C9orf3-217ENST00000479161 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.29□□□□□ -1.24
C9orf3-217ENST00000479161 KRTAP9-7A8MTY7 169 aa7.28□□□□□ -1.24
C9orf3-217ENST00000479161 Q1T7F1 81 aa7.27□□□□□ -1.25
C9orf3-217ENST00000479161 CSAG1Q6PB30 78 aa7.27□□□□□ -1.25
C9orf3-217ENST00000479161 V9GYY9 64 aa7.27□□□□□ -1.25
C9orf3-217ENST00000479161 LCE2BO14633 110 aa7.26□□□□□ -1.25
C9orf3-217ENST00000479161 LCA10Q71F78 164 aa7.25□□□□□ -1.25
C9orf3-217ENST00000479161 A8MUN3 132 aa7.24□□□□□ -1.25
C9orf3-217ENST00000479161 USH2AO75445 5202 aa7.24□□□□□ -1.25
C9orf3-217ENST00000479161 SSPOA2VEC9 5147 aa7.23□□□□□ -1.25
C9orf3-217ENST00000479161 PRO0628Q9UI54 55 aa7.17□□□□□ -1.26
C9orf3-217ENST00000479161 COA5Q86WW8 74 aa7.14□□□□□ -1.27
C9orf3-217ENST00000479161 FCGBPQ9Y6R7 5405 aaPredicted RBP7.1□□□□□ -1.27
C9orf3-217ENST00000479161 H0YAA0 97 aa7.08□□□□□ -1.28
C9orf3-217ENST00000479161 KRTAP19-1Q8IUB9 90 aa7.05□□□□□ -1.28
C9orf3-217ENST00000479161 BRK1Q8WUW1 75 aa7.05□□□□□ -1.28
C9orf3-217ENST00000479161 DMAC1Q96GE9 116 aa7.05□□□□□ -1.28
C9orf3-217ENST00000479161 SPRR2GQ9BYE4 73 aa7.04□□□□□ -1.28
C9orf3-217ENST00000479161 ACYP2P14621 99 aa7.03□□□□□ -1.28
C9orf3-217ENST00000479161 CRIPTQ9P021 101 aa7.03□□□□□ -1.28
C9orf3-217ENST00000479161 KRTAP19-6Q3LI70 58 aa7.02□□□□□ -1.29
C9orf3-217ENST00000479161 LINC01558Q9Y6Z2 57 aa7.02□□□□□ -1.29
C9orf3-217ENST00000479161 Q5VV11 94 aa7.01□□□□□ -1.29
C9orf3-217ENST00000479161 PSPHP1O15172 72 aa7□□□□□ -1.29
C9orf3-217ENST00000479161 PRR15LQ9BU68 103 aa6.98□□□□□ -1.29
C9orf3-217ENST00000479161 KRTAP19-8Q3LI54 63 aa6.96□□□□□ -1.3
C9orf3-217ENST00000479161 CHKB-CPT1BH3BT56 60 aa6.92□□□□□ -1.3
C9orf3-217ENST00000479161 MACF1Q9UPN3 7388 aaKnown RBP6.91□□□□□ -1.3
C9orf3-217ENST00000479161 MT1BP07438 61 aa6.87□□□□□ -1.31
C9orf3-217ENST00000479161 ADM2Q7Z4H4 148 aa6.87□□□□□ -1.31
C9orf3-217ENST00000479161 A6NED7 52 aa6.85□□□□□ -1.31
C9orf3-217ENST00000479161 CDC42SE1Q9NRR8 79 aa6.84□□□□□ -1.31
C9orf3-217ENST00000479161 SYNE2Q8WXH0 6885 aaKnown RBP6.83□□□□□ -1.32
C9orf3-217ENST00000479161 SPTSSBQ8NFR3 76 aa6.82□□□□□ -1.32
C9orf3-217ENST00000479161 A0A1B0GU69 56 aa6.75□□□□□ -1.33
C9orf3-217ENST00000479161 P0C880 135 aa6.74□□□□□ -1.33
C9orf3-217ENST00000479161 A6NN06 94 aa6.71□□□□□ -1.34
C9orf3-217ENST00000479161 KRTAP10-5P60370 271 aa6.71□□□□□ -1.34
C9orf3-217ENST00000479161 R4GN34 69 aa6.71□□□□□ -1.34
C9orf3-217ENST00000479161 KRTAP6-3Q3LI67 103 aa6.69□□□□□ -1.34
C9orf3-217ENST00000479161 A8MU10 97 aa6.68□□□□□ -1.34
C9orf3-217ENST00000479161 PMAIP1Q13794 54 aa6.68□□□□□ -1.34
C9orf3-217ENST00000479161 SPATA8Q6RVD6 105 aa6.65□□□□□ -1.34
C9orf3-217ENST00000479161 UQCR11O14957 56 aa6.64□□□□□ -1.35
C9orf3-217ENST00000479161 M0QZ58 72 aa6.63□□□□□ -1.35
C9orf3-217ENST00000479161 SEC61GP60059 68 aa6.62□□□□□ -1.35
C9orf3-217ENST00000479161 KTN1-AS1Q86SY8 53 aa6.6□□□□□ -1.35
C9orf3-217ENST00000479161 PLAC4Q8WY50 150 aa6.6□□□□□ -1.35
C9orf3-217ENST00000479161 MIR22HGQ0VDD5 57 aa6.58□□□□□ -1.36
C9orf3-217ENST00000479161 PRO2289Q9P1D8 64 aa6.56□□□□□ -1.36
C9orf3-217ENST00000479161 MT1XP80297 61 aa6.49□□□□□ -1.37
C9orf3-217ENST00000479161 LINC01554Q52M75 96 aa6.47□□□□□ -1.37
C9orf3-217ENST00000479161 NEBP20929 6669 aa6.47□□□□□ -1.37
C9orf3-217ENST00000479161 MUC12Q9UKN1 5478 aa6.44□□□□□ -1.38
C9orf3-217ENST00000479161 A0A1B0GU33 70 aa6.41□□□□□ -1.38
C9orf3-217ENST00000479161 KRTAP12-2P59991 146 aa6.38□□□□□ -1.39
C9orf3-217ENST00000479161 KRTAP13-4Q3LI77 160 aa6.36□□□□□ -1.39
C9orf3-217ENST00000479161 KRTAP5-9P26371 169 aa6.35□□□□□ -1.39
C9orf3-217ENST00000479161 KRTAP20-1Q3LI63 56 aa6.32□□□□□ -1.4
C9orf3-217ENST00000479161 K7ERS5 55 aa6.26□□□□□ -1.41
C9orf3-217ENST00000479161 KMT2DO14686 5537 aa6.24□□□□□ -1.41
C9orf3-217ENST00000479161 KRTAP10-12P60413 245 aa6.21□□□□□ -1.42
C9orf3-217ENST00000479161 MDN1Q9NU22 5596 aa6.2□□□□□ -1.42
C9orf3-217ENST00000479161 CAMK2N1Q7Z7J9 78 aa6.18□□□□□ -1.42
C9orf3-217ENST00000479161 KRTAP8-1Q8IUC2 63 aa6.17□□□□□ -1.42
C9orf3-217ENST00000479161 PRAC1Q96KF2 57 aa6.17□□□□□ -1.42
C9orf3-217ENST00000479161 KRTAP10-7P60409 375 aaPredicted RBP6.16□□□□□ -1.42
C9orf3-217ENST00000479161 A0A0D9SG42 100 aa6.13□□□□□ -1.43
C9orf3-217ENST00000479161 KRTAP12-1P59990 96 aa6.11□□□□□ -1.43
C9orf3-217ENST00000479161 KRTAP4-8A0A0G2JLE6 195 aa6.1□□□□□ -1.43
C9orf3-217ENST00000479161 LOC100996750A0A140TA64 210 aa6.1□□□□□ -1.43
C9orf3-217ENST00000479161 SPRR2FQ96RM1 72 aa6.1□□□□□ -1.43
C9orf3-217ENST00000479161 KRTAP4-6Q9BYQ5 205 aa6.1□□□□□ -1.43
C9orf3-217ENST00000479161 KRTAP4-8Q9BYQ9 185 aa6.1□□□□□ -1.43
C9orf3-217ENST00000479161 KRTAP2-3P0C7H8 128 aa6.06□□□□□ -1.44
C9orf3-217ENST00000479161 SPINT4Q6UDR6 99 aa6.06□□□□□ -1.44
C9orf3-217ENST00000479161 KRTAP2-4Q9BYR9 128 aa6.06□□□□□ -1.44
C9orf3-217ENST00000479161 ROMO1P60602 79 aa6.04□□□□□ -1.44
C9orf3-217ENST00000479161 KRTAP25-1Q3LHN0 102 aa6.02□□□□□ -1.45
C9orf3-217ENST00000479161 SPRR2EP22531 72 aa5.96□□□□□ -1.46
C9orf3-217ENST00000479161 SPRR2BP35325 72 aa5.96□□□□□ -1.46
C9orf3-217ENST00000479161 SPRR2AP35326 72 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms