RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 Q1T7F1 81 aa6.92□□□□□ -1.3
UPF3A-204ENST00000475218 A8MWP4 228 aa6.92□□□□□ -1.3
UPF3A-204ENST00000475218 KRTAP9-3Q9BYQ3 159 aa6.92□□□□□ -1.3
UPF3A-204ENST00000475218 C8orf17Q9NRJ1 99 aa6.92□□□□□ -1.3
UPF3A-204ENST00000475218 SPANXA2-OT1Q8N9U9 137 aa6.9□□□□□ -1.31
UPF3A-204ENST00000475218 C1orf64Q8NEQ6 169 aa6.87□□□□□ -1.31
UPF3A-204ENST00000475218 FCGBPQ9Y6R7 5405 aaPredicted RBP6.87□□□□□ -1.31
UPF3A-204ENST00000475218 BRK1Q8WUW1 75 aa6.86□□□□□ -1.31
UPF3A-204ENST00000475218 TRAV22A0A0B4J277 110 aa6.85□□□□□ -1.31
UPF3A-204ENST00000475218 KRTAP10-10P60014 251 aa6.85□□□□□ -1.31
UPF3A-204ENST00000475218 PRR15Q8IV56 129 aa6.85□□□□□ -1.31
UPF3A-204ENST00000475218 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.85□□□□□ -1.31
UPF3A-204ENST00000475218 MMP24-AS1A0A0U1RRL7 71 aa6.84□□□□□ -1.31
UPF3A-204ENST00000475218 CASC2Q6XLA1 102 aa6.82□□□□□ -1.32
UPF3A-204ENST00000475218 WFDC13Q8IUB5 93 aa6.82□□□□□ -1.32
UPF3A-204ENST00000475218 H0Y9P7 68 aa6.8□□□□□ -1.32
UPF3A-204ENST00000475218 KRTAP19-1Q8IUB9 90 aa6.8□□□□□ -1.32
UPF3A-204ENST00000475218 LINC00208Q96KT6 92 aa6.79□□□□□ -1.32
UPF3A-204ENST00000475218 TP53AIP1Q9HCN2 124 aa6.79□□□□□ -1.32
UPF3A-204ENST00000475218 MRPL34Q9BQ48 92 aaKnown RBP6.78□□□□□ -1.32
UPF3A-204ENST00000475218 KRTAP9-7A8MTY7 169 aa6.75□□□□□ -1.33
UPF3A-204ENST00000475218 H3BS24 57 aa6.74□□□□□ -1.33
UPF3A-204ENST00000475218 Q5W150 140 aa6.72□□□□□ -1.33
UPF3A-204ENST00000475218 NDUFS5O43920 106 aa6.67□□□□□ -1.34
UPF3A-204ENST00000475218 H1FX-AS1Q4G0G2 97 aa6.67□□□□□ -1.34
UPF3A-204ENST00000475218 PSPHP1O15172 72 aa6.66□□□□□ -1.34
UPF3A-204ENST00000475218 A0A0A0MQY5 61 aa6.65□□□□□ -1.34
UPF3A-204ENST00000475218 LOC101927531A0A1B0GV80 90 aa6.65□□□□□ -1.34
UPF3A-204ENST00000475218 KRTAP19-6Q3LI70 58 aa6.64□□□□□ -1.35
UPF3A-204ENST00000475218 Q5VV11 94 aa6.64□□□□□ -1.35
UPF3A-204ENST00000475218 IGKV2D-30A0A075B6S6 120 aa6.64□□□□□ -1.35
UPF3A-204ENST00000475218 A8MUN3 132 aa6.64□□□□□ -1.35
UPF3A-204ENST00000475218 IGKV2-30P06310 120 aa6.64□□□□□ -1.35
UPF3A-204ENST00000475218 COA5Q86WW8 74 aa6.63□□□□□ -1.35
UPF3A-204ENST00000475218 PMAIP1Q13794 54 aa6.62□□□□□ -1.35
UPF3A-204ENST00000475218 C7orf65Q6ZTY9 151 aa6.62□□□□□ -1.35
UPF3A-204ENST00000475218 CHKB-CPT1BH3BT56 60 aa6.59□□□□□ -1.35
UPF3A-204ENST00000475218 PRR15LQ9BU68 103 aa6.59□□□□□ -1.35
UPF3A-204ENST00000475218 LINC01558Q9Y6Z2 57 aa6.58□□□□□ -1.36
UPF3A-204ENST00000475218 MACF1Q9UPN3 7388 aaKnown RBP6.55□□□□□ -1.36
UPF3A-204ENST00000475218 KRTAP3-1Q9BYR8 98 aa6.54□□□□□ -1.36
UPF3A-204ENST00000475218 CDC42SE1Q9NRR8 79 aa6.52□□□□□ -1.37
UPF3A-204ENST00000475218 A6NED7 52 aa6.52□□□□□ -1.37
UPF3A-204ENST00000475218 SYNE2Q8WXH0 6885 aaKnown RBP6.5□□□□□ -1.37
UPF3A-204ENST00000475218 ACYP2P14621 99 aa6.46□□□□□ -1.37
UPF3A-204ENST00000475218 KTN1-AS1Q86SY8 53 aa6.46□□□□□ -1.37
UPF3A-204ENST00000475218 LCA10Q71F78 164 aa6.45□□□□□ -1.38
UPF3A-204ENST00000475218 SPTSSBQ8NFR3 76 aa6.41□□□□□ -1.38
UPF3A-204ENST00000475218 A6NN06 94 aa6.4□□□□□ -1.38
UPF3A-204ENST00000475218 DMAC1Q96GE9 116 aa6.4□□□□□ -1.38
UPF3A-204ENST00000475218 S4R3F8 94 aa6.4□□□□□ -1.38
UPF3A-204ENST00000475218 MT1BP07438 61 aa6.39□□□□□ -1.39
UPF3A-204ENST00000475218 A8MU10 97 aa6.36□□□□□ -1.39
UPF3A-204ENST00000475218 SPRR2GQ9BYE4 73 aa6.35□□□□□ -1.39
UPF3A-204ENST00000475218 KRTAP19-8Q3LI54 63 aa6.34□□□□□ -1.39
UPF3A-204ENST00000475218 KRTAP6-3Q3LI67 103 aa6.34□□□□□ -1.39
UPF3A-204ENST00000475218 CSAG1Q6PB30 78 aa6.34□□□□□ -1.39
UPF3A-204ENST00000475218 A0A1B0GU69 56 aa6.27□□□□□ -1.41
UPF3A-204ENST00000475218 SPATA8Q6RVD6 105 aa6.25□□□□□ -1.41
UPF3A-204ENST00000475218 UQCR11O14957 56 aa6.22□□□□□ -1.41
UPF3A-204ENST00000475218 KRTAP10-5P60370 271 aa6.22□□□□□ -1.41
UPF3A-204ENST00000475218 LOC100996750A0A140TA64 210 aa6.19□□□□□ -1.42
UPF3A-204ENST00000475218 KRTAP4-6Q9BYQ5 205 aa6.19□□□□□ -1.42
UPF3A-204ENST00000475218 MIR22HGQ0VDD5 57 aa6.17□□□□□ -1.42
UPF3A-204ENST00000475218 MUC12Q9UKN1 5478 aa6.15□□□□□ -1.42
UPF3A-204ENST00000475218 NEBP20929 6669 aa6.13□□□□□ -1.43
UPF3A-204ENST00000475218 CRIPTQ9P021 101 aa6.13□□□□□ -1.43
UPF3A-204ENST00000475218 H0YAA0 97 aa6.11□□□□□ -1.43
UPF3A-204ENST00000475218 KRTAP5-9P26371 169 aa6.06□□□□□ -1.44
UPF3A-204ENST00000475218 KMT2DO14686 5537 aa6.05□□□□□ -1.44
UPF3A-204ENST00000475218 ADM2Q7Z4H4 148 aa6.03□□□□□ -1.44
UPF3A-204ENST00000475218 MDN1Q9NU22 5596 aa6.02□□□□□ -1.45
UPF3A-204ENST00000475218 LINC01554Q52M75 96 aa5.98□□□□□ -1.45
UPF3A-204ENST00000475218 MT1XP80297 61 aa5.97□□□□□ -1.45
UPF3A-204ENST00000475218 PRAC1Q96KF2 57 aa5.96□□□□□ -1.46
UPF3A-204ENST00000475218 P0C880 135 aa5.93□□□□□ -1.46
UPF3A-204ENST00000475218 A0A1B0GU33 70 aa5.9□□□□□ -1.46
UPF3A-204ENST00000475218 KRTAP20-1Q3LI63 56 aa5.89□□□□□ -1.47
UPF3A-204ENST00000475218 K7ERS5 55 aa5.87□□□□□ -1.47
UPF3A-204ENST00000475218 PRO2289Q9P1D8 64 aa5.85□□□□□ -1.47
UPF3A-204ENST00000475218 R4GN34 69 aa5.84□□□□□ -1.47
UPF3A-204ENST00000475218 PLAC4Q8WY50 150 aa5.83□□□□□ -1.48
UPF3A-204ENST00000475218 M0QZ58 72 aa5.81□□□□□ -1.48
UPF3A-204ENST00000475218 SPRR2FQ96RM1 72 aa5.81□□□□□ -1.48
UPF3A-204ENST00000475218 KRTAP12-2P59991 146 aa5.8□□□□□ -1.48
UPF3A-204ENST00000475218 KRTAP25-1Q3LHN0 102 aa5.78□□□□□ -1.48
UPF3A-204ENST00000475218 KRTAP8-1Q8IUC2 63 aa5.75□□□□□ -1.49
UPF3A-204ENST00000475218 KRTAP4-8A0A0G2JLE6 195 aa5.75□□□□□ -1.49
UPF3A-204ENST00000475218 KRTAP4-8Q9BYQ9 185 aa5.75□□□□□ -1.49
UPF3A-204ENST00000475218 SPRR2EP22531 72 aa5.74□□□□□ -1.49
UPF3A-204ENST00000475218 SPRR2BP35325 72 aa5.74□□□□□ -1.49
UPF3A-204ENST00000475218 SPRR2AP35326 72 aa5.74□□□□□ -1.49
UPF3A-204ENST00000475218 KRTAP2-3P0C7H8 128 aa5.72□□□□□ -1.49
UPF3A-204ENST00000475218 KRTAP2-4Q9BYR9 128 aa5.72□□□□□ -1.49
UPF3A-204ENST00000475218 LCE1AQ5T7P2 110 aa5.71□□□□□ -1.5
UPF3A-204ENST00000475218 KRTAP10-7P60409 375 aaPredicted RBP5.69□□□□□ -1.5
UPF3A-204ENST00000475218 ROMO1P60602 79 aa5.66□□□□□ -1.5
UPF3A-204ENST00000475218 KRTAP10-12P60413 245 aa5.65□□□□□ -1.51
UPF3A-204ENST00000475218 SPRR2DP22532 72 aa5.55□□□□□ -1.52
UPF3A-204ENST00000475218 KRTAP13-4Q3LI77 160 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms