RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	CSAG1	Q6PB30	78 aa		5.41	□□□□□ -1.54
CPNE1-222	ENST00000473373		A0A1B0GV90	55 aa		5.39	□□□□□ -1.55
CPNE1-222	ENST00000473373		H0Y9P7	68 aa		5.39	□□□□□ -1.55
CPNE1-222	ENST00000473373	UQCRQ	O14949	82 aa		5.39	□□□□□ -1.55
CPNE1-222	ENST00000473373	CYP4F30P	Q9H0H9	118 aa		5.39	□□□□□ -1.55
CPNE1-222	ENST00000473373	ATOX1	O00244	68 aa		5.38	□□□□□ -1.55
CPNE1-222	ENST00000473373	LCA10	Q71F78	164 aa		5.38	□□□□□ -1.55
CPNE1-222	ENST00000473373	LINC00643	Q86TS7	51 aa		5.38	□□□□□ -1.55
CPNE1-222	ENST00000473373		A0A087WVE0	104 aa		5.36	□□□□□ -1.55
CPNE1-222	ENST00000473373	KRTAP19-6	Q3LI70	58 aa		5.36	□□□□□ -1.55
CPNE1-222	ENST00000473373	LCE1D	Q5T752	114 aa		5.36	□□□□□ -1.55
CPNE1-222	ENST00000473373	LCE4A	Q5TA78	99 aa		5.36	□□□□□ -1.55
CPNE1-222	ENST00000473373	KRTAP3-1	Q9BYR8	98 aa		5.36	□□□□□ -1.55
CPNE1-222	ENST00000473373		J3QR89	54 aa		5.35	□□□□□ -1.55
CPNE1-222	ENST00000473373	KRTAP6-3	Q3LI67	103 aa		5.32	□□□□□ -1.56
CPNE1-222	ENST00000473373	MP68	P56378	58 aa		5.31	□□□□□ -1.56
CPNE1-222	ENST00000473373	LINC00208	Q96KT6	92 aa		5.3	□□□□□ -1.56
CPNE1-222	ENST00000473373	NEB	P20929	6669 aa		5.28	□□□□□ -1.56
CPNE1-222	ENST00000473373	SCGB1A1	P11684	91 aa		5.28	□□□□□ -1.56
CPNE1-222	ENST00000473373	NDUFC1	O43677	76 aa		5.27	□□□□□ -1.57
CPNE1-222	ENST00000473373	KLKP1	Q107X0	134 aa		5.24	□□□□□ -1.57
CPNE1-222	ENST00000473373		A8MUN3	132 aa		5.23	□□□□□ -1.57
CPNE1-222	ENST00000473373		Q5VV11	94 aa		5.23	□□□□□ -1.57
CPNE1-222	ENST00000473373	KRTAP4-7	Q9BYR0	210 aa		5.23	□□□□□ -1.57
CPNE1-222	ENST00000473373	IMUP	Q9GZP8	106 aa		5.23	□□□□□ -1.57
CPNE1-222	ENST00000473373	OCR1	Q9BZK8	76 aa		5.21	□□□□□ -1.58
CPNE1-222	ENST00000473373	KRTAP23-1	A1A580	65 aa		5.18	□□□□□ -1.58
CPNE1-222	ENST00000473373		H3BPC8	53 aa		5.18	□□□□□ -1.58
CPNE1-222	ENST00000473373	MUC12	Q9UKN1	5478 aa		5.18	□□□□□ -1.58
CPNE1-222	ENST00000473373	CRIPT	Q9P021	101 aa		5.17	□□□□□ -1.58
CPNE1-222	ENST00000473373		A6NN06	94 aa		5.16	□□□□□ -1.58
CPNE1-222	ENST00000473373	SPRR2G	Q9BYE4	73 aa		5.16	□□□□□ -1.58
CPNE1-222	ENST00000473373	KRTAP4-9	Q9BYQ8	210 aa		5.16	□□□□□ -1.58
CPNE1-222	ENST00000473373	LCE5A	Q5TCM9	118 aa		5.14	□□□□□ -1.59
CPNE1-222	ENST00000473373	ADM2	Q7Z4H4	148 aa		5.14	□□□□□ -1.59
CPNE1-222	ENST00000473373		K7ERU9	68 aa		5.12	□□□□□ -1.59
CPNE1-222	ENST00000473373	MT1B	P07438	61 aa		5.11	□□□□□ -1.59
CPNE1-222	ENST00000473373	KRTAP19-8	Q3LI54	63 aa		5.11	□□□□□ -1.59
CPNE1-222	ENST00000473373		H0YAA0	97 aa		5.1	□□□□□ -1.59
CPNE1-222	ENST00000473373	KRTAP20-1	Q3LI63	56 aa		5.1	□□□□□ -1.59
CPNE1-222	ENST00000473373	MT-ATP8	P03928	68 aa		5.07	□□□□□ -1.6
CPNE1-222	ENST00000473373	C20orf197	Q8N268	126 aa		5.07	□□□□□ -1.6
CPNE1-222	ENST00000473373	SMIM20	Q8N5G0	67 aa		5.07	□□□□□ -1.6
CPNE1-222	ENST00000473373	DMAC1	Q96GE9	116 aa		5.07	□□□□□ -1.6
CPNE1-222	ENST00000473373	TRAV7	A0A075B6U4	112 aa		5.04	□□□□□ -1.6
CPNE1-222	ENST00000473373		R4GN34	69 aa		5.04	□□□□□ -1.6
CPNE1-222	ENST00000473373	ACYP2	P14621	99 aa		5.03	□□□□□ -1.6
CPNE1-222	ENST00000473373	KRTAP4-11	Q9BYQ6	195 aa		5.02	□□□□□ -1.61
CPNE1-222	ENST00000473373	MDN1	Q9NU22	5596 aa		5.01	□□□□□ -1.61
CPNE1-222	ENST00000473373	CHKB-CPT1B	H3BT56	60 aa		5.01	□□□□□ -1.61
CPNE1-222	ENST00000473373	KRTAP10-5	P60370	271 aa		5.01	□□□□□ -1.61
CPNE1-222	ENST00000473373	SPTSSB	Q8NFR3	76 aa		5.01	□□□□□ -1.61
CPNE1-222	ENST00000473373	PLAC4	Q8WY50	150 aa		5	□□□□□ -1.61
CPNE1-222	ENST00000473373		M0QZ58	72 aa		4.99	□□□□□ -1.61
CPNE1-222	ENST00000473373	KMT2D	O14686	5537 aa		4.98	□□□□□ -1.61
CPNE1-222	ENST00000473373		P0C880	135 aa		4.97	□□□□□ -1.61
CPNE1-222	ENST00000473373	LINC01554	Q52M75	96 aa		4.97	□□□□□ -1.61
CPNE1-222	ENST00000473373	SNURF	Q9Y675	71 aa		4.97	□□□□□ -1.61
CPNE1-222	ENST00000473373	KRTAP4-2	Q9BYR5	136 aa		4.96	□□□□□ -1.62
CPNE1-222	ENST00000473373	PRO2289	Q9P1D8	64 aa		4.96	□□□□□ -1.62
CPNE1-222	ENST00000473373	KRTAP5-9	P26371	169 aa		4.92	□□□□□ -1.62
CPNE1-222	ENST00000473373	KRTAP2-3	P0C7H8	128 aa		4.88	□□□□□ -1.63
CPNE1-222	ENST00000473373	SERP2	Q8N6R1	65 aa		4.88	□□□□□ -1.63
CPNE1-222	ENST00000473373	KRTAP2-4	Q9BYR9	128 aa		4.88	□□□□□ -1.63
CPNE1-222	ENST00000473373	SPANXA2-OT1	Q8N9U9	137 aa		4.84	□□□□□ -1.63
CPNE1-222	ENST00000473373	MT1X	P80297	61 aa		4.8	□□□□□ -1.64
CPNE1-222	ENST00000473373	KRTAP15-1	Q3LI76	137 aa		4.76	□□□□□ -1.65
CPNE1-222	ENST00000473373	SPRR2E	P22531	72 aa		4.75	□□□□□ -1.65
CPNE1-222	ENST00000473373	SPRR2B	P35325	72 aa		4.75	□□□□□ -1.65
CPNE1-222	ENST00000473373	SPRR2A	P35326	72 aa		4.75	□□□□□ -1.65
CPNE1-222	ENST00000473373	SEC61G	P60059	68 aa		4.75	□□□□□ -1.65
CPNE1-222	ENST00000473373	COA5	Q86WW8	74 aa		4.75	□□□□□ -1.65
CPNE1-222	ENST00000473373	SPRR2F	Q96RM1	72 aa		4.75	□□□□□ -1.65
CPNE1-222	ENST00000473373	COX7C	P15954	63 aa		4.74	□□□□□ -1.65
CPNE1-222	ENST00000473373	KRTAP8-1	Q8IUC2	63 aa		4.73	□□□□□ -1.65
CPNE1-222	ENST00000473373	SERP1	Q9Y6X1	66 aa		4.73	□□□□□ -1.65
CPNE1-222	ENST00000473373	KRTAP2-2	Q9BYT5	123 aa		4.7	□□□□□ -1.66
CPNE1-222	ENST00000473373	KRTAP2-1	Q9BYU5	128 aa		4.7	□□□□□ -1.66
CPNE1-222	ENST00000473373	KRTAP12-2	P59991	146 aa		4.68	□□□□□ -1.66
CPNE1-222	ENST00000473373	CAMK2N1	Q7Z7J9	78 aa		4.68	□□□□□ -1.66
CPNE1-222	ENST00000473373	ANAPC13	Q9BS18	74 aa		4.65	□□□□□ -1.67
CPNE1-222	ENST00000473373		A0A0D9SG42	100 aa		4.63	□□□□□ -1.67
CPNE1-222	ENST00000473373	LCE1A	Q5T7P2	110 aa		4.63	□□□□□ -1.67
CPNE1-222	ENST00000473373		H7BZZ5	65 aa		4.62	□□□□□ -1.67
CPNE1-222	ENST00000473373	KRTAP13-4	Q3LI77	160 aa		4.62	□□□□□ -1.67
CPNE1-222	ENST00000473373	KRTAP10-7	P60409	375 aa	Predicted RBP	4.61	□□□□□ -1.67
CPNE1-222	ENST00000473373	GPR98	Q8WXG9	6306 aa		4.6	□□□□□ -1.67
CPNE1-222	ENST00000473373	SPRR2D	P22532	72 aa		4.6	□□□□□ -1.67
CPNE1-222	ENST00000473373	CYSTM1	Q9H1C7	97 aa		4.58	□□□□□ -1.68
CPNE1-222	ENST00000473373		A0A1B0GU33	70 aa		4.57	□□□□□ -1.68
CPNE1-222	ENST00000473373	SPATA8	Q6RVD6	105 aa		4.57	□□□□□ -1.68
CPNE1-222	ENST00000473373	SPINT4	Q6UDR6	99 aa		4.57	□□□□□ -1.68
CPNE1-222	ENST00000473373		A0A1B0GU69	56 aa		4.56	□□□□□ -1.68
CPNE1-222	ENST00000473373	KRTAP10-12	P60413	245 aa		4.56	□□□□□ -1.68
CPNE1-222	ENST00000473373	SMIM26	A0A096LP01	95 aa		4.49	□□□□□ -1.69
CPNE1-222	ENST00000473373	CCDC179	H3BU77	68 aa		4.49	□□□□□ -1.69
CPNE1-222	ENST00000473373	ATP5E	P56381	51 aa	Predicted RBP	4.47	□□□□□ -1.69
CPNE1-222	ENST00000473373	PRR15L	Q9BU68	103 aa		4.47	□□□□□ -1.69
CPNE1-222	ENST00000473373	KRTAP12-1	P59990	96 aa		4.42	□□□□□ -1.7
CPNE1-222	ENST00000473373		A8MU10	97 aa		4.39	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms