RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 RETNLBQ9BQ08 111 aa5.38□□□□□ -1.55
HDAC3-205ENST00000469550 KRTAP10-8P60410 259 aa5.36□□□□□ -1.55
HDAC3-205ENST00000469550 KRTAP13-2Q52LG2 175 aa5.35□□□□□ -1.55
HDAC3-205ENST00000469550 LRP2P98164 4655 aa5.34□□□□□ -1.55
HDAC3-205ENST00000469550 RNF213Q63HN8 5207 aa5.34□□□□□ -1.56
HDAC3-205ENST00000469550 C4orf48Q5BLP8 95 aa5.31□□□□□ -1.56
HDAC3-205ENST00000469550 CSAG1Q6PB30 78 aa5.31□□□□□ -1.56
HDAC3-205ENST00000469550 KRTAP1-4P0C5Y4 121 aa5.25□□□□□ -1.57
HDAC3-205ENST00000469550 SPINK1P00995 79 aa5.24□□□□□ -1.57
HDAC3-205ENST00000469550 A8MUU9 505 aa5.24□□□□□ -1.57
HDAC3-205ENST00000469550 H0YAA0 97 aa5.21□□□□□ -1.58
HDAC3-205ENST00000469550 RPS29P62273 56 aaKnown RBP5.2□□□□□ -1.58
HDAC3-205ENST00000469550 A0A1B0GU33 70 aa5.18□□□□□ -1.58
HDAC3-205ENST00000469550 KRTAP25-1Q3LHN0 102 aa5.18□□□□□ -1.58
HDAC3-205ENST00000469550 TYMSOSQ8TAI1 123 aa5.18□□□□□ -1.58
HDAC3-205ENST00000469550 LPAP08519 4548 aa5.18□□□□□ -1.58
HDAC3-205ENST00000469550 LINC00304Q8N9R0 145 aa5.18□□□□□ -1.58
HDAC3-205ENST00000469550 H3BS24 57 aa5.16□□□□□ -1.58
HDAC3-205ENST00000469550 H1FX-AS1Q4G0G2 97 aa5.16□□□□□ -1.58
HDAC3-205ENST00000469550 C20orf166-AS1Q96NR2 134 aa5.14□□□□□ -1.59
HDAC3-205ENST00000469550 KRTAP3-1Q9BYR8 98 aa5.13□□□□□ -1.59
HDAC3-205ENST00000469550 ROMO1P60602 79 aa5.1□□□□□ -1.59
HDAC3-205ENST00000469550 K7ERS5 55 aa5.09□□□□□ -1.59
HDAC3-205ENST00000469550 MUC2Q02817 5179 aa5.04□□□□□ -1.6
HDAC3-205ENST00000469550 COX6B2Q6YFQ2 88 aa5.04□□□□□ -1.6
HDAC3-205ENST00000469550 MUC17Q685J3 4493 aa5.03□□□□□ -1.6
HDAC3-205ENST00000469550 LCE2AQ5TA79 106 aaPredicted RBP5.03□□□□□ -1.6
HDAC3-205ENST00000469550 KRTAP9-2Q9BYQ4 174 aa5.02□□□□□ -1.61
HDAC3-205ENST00000469550 C9orf92A6NGG3 77 aa5.01□□□□□ -1.61
HDAC3-205ENST00000469550 TPRXLQ17RH7 258 aa5□□□□□ -1.61
HDAC3-205ENST00000469550 FAT4Q6V0I7 4981 aa4.98□□□□□ -1.61
HDAC3-205ENST00000469550 RPL37P61927 97 aaKnown RBP4.96□□□□□ -1.61
HDAC3-205ENST00000469550 KRTAP10-6P60371 365 aaPredicted RBP4.94□□□□□ -1.62
HDAC3-205ENST00000469550 CRIPTQ9P021 101 aa4.93□□□□□ -1.62
HDAC3-205ENST00000469550 P0C880 135 aa4.91□□□□□ -1.62
HDAC3-205ENST00000469550 KRTAP9-6A0A140TA67 174 aa4.91□□□□□ -1.62
HDAC3-205ENST00000469550 KRTAP3-3Q9BYR6 98 aa4.91□□□□□ -1.62
HDAC3-205ENST00000469550 KRTAP3-2Q9BYR7 98 aa4.89□□□□□ -1.63
HDAC3-205ENST00000469550 KRTAP13-4Q3LI77 160 aa4.87□□□□□ -1.63
HDAC3-205ENST00000469550 SEC61BP60468 96 aaKnown RBP4.82□□□□□ -1.64
HDAC3-205ENST00000469550 SPINT4Q6UDR6 99 aa4.82□□□□□ -1.64
HDAC3-205ENST00000469550 A0A0D9SG42 100 aa4.82□□□□□ -1.64
HDAC3-205ENST00000469550 LCE2DQ5TA82 110 aaPredicted RBP4.82□□□□□ -1.64
HDAC3-205ENST00000469550 S4R3F8 94 aa4.82□□□□□ -1.64
HDAC3-205ENST00000469550 KRTAP4-1Q9BYQ7 146 aa4.81□□□□□ -1.64
HDAC3-205ENST00000469550 XP32Q5T750 250 aa4.79□□□□□ -1.64
HDAC3-205ENST00000469550 KRTAP15-1Q3LI76 137 aa4.78□□□□□ -1.64
HDAC3-205ENST00000469550 C10orf95Q9H7T3 257 aa4.75□□□□□ -1.65
HDAC3-205ENST00000469550 LCE2CQ5TA81 110 aa4.74□□□□□ -1.65
HDAC3-205ENST00000469550 KRTAP12-2P59991 146 aa4.74□□□□□ -1.65
HDAC3-205ENST00000469550 KRTAP19-2Q3LHN2 52 aa4.73□□□□□ -1.65
HDAC3-205ENST00000469550 KRTAP12-1P59990 96 aa4.73□□□□□ -1.65
HDAC3-205ENST00000469550 CRCT1Q9UGL9 99 aa4.72□□□□□ -1.65
HDAC3-205ENST00000469550 M0QZ58 72 aa4.7□□□□□ -1.66
HDAC3-205ENST00000469550 MT1HP80294 61 aa4.68□□□□□ -1.66
HDAC3-205ENST00000469550 NDUFAF8A1L188 74 aa4.67□□□□□ -1.66
HDAC3-205ENST00000469550 LORP23490 312 aaPredicted RBP4.64□□□□□ -1.67
HDAC3-205ENST00000469550 FSIP2Q5CZC0 6907 aa4.62□□□□□ -1.67
HDAC3-205ENST00000469550 FLGP20930 4061 aaPredicted RBP4.56□□□□□ -1.68
HDAC3-205ENST00000469550 M0R2T5 61 aa4.53□□□□□ -1.68
HDAC3-205ENST00000469550 PLAC4Q8WY50 150 aa4.47□□□□□ -1.69
HDAC3-205ENST00000469550 R4GN34 69 aa4.47□□□□□ -1.69
HDAC3-205ENST00000469550 KRTAP9-8Q9BYQ0 159 aa4.42□□□□□ -1.7
HDAC3-205ENST00000469550 PP632Q6XCG6 107 aa4.41□□□□□ -1.7
HDAC3-205ENST00000469550 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.4□□□□□ -1.7
HDAC3-205ENST00000469550 USH2AO75445 5202 aa4.4□□□□□ -1.71
HDAC3-205ENST00000469550 KRTAP9-7A8MTY7 169 aa4.39□□□□□ -1.71
HDAC3-205ENST00000469550 SSPOA2VEC9 5147 aa4.37□□□□□ -1.71
HDAC3-205ENST00000469550 MT2AP02795 61 aa4.33□□□□□ -1.72
HDAC3-205ENST00000469550 LUZP6Q538Z0 58 aa4.31□□□□□ -1.72
HDAC3-205ENST00000469550 FCGBPQ9Y6R7 5405 aaPredicted RBP4.31□□□□□ -1.72
HDAC3-205ENST00000469550 LCE2BO14633 110 aa4.29□□□□□ -1.72
HDAC3-205ENST00000469550 MT1FP04733 61 aa4.29□□□□□ -1.72
HDAC3-205ENST00000469550 KRTAP9-3Q9BYQ3 159 aa4.29□□□□□ -1.72
HDAC3-205ENST00000469550 KRTAP19-1Q8IUB9 90 aa4.27□□□□□ -1.73
HDAC3-205ENST00000469550 CAMK2N1Q7Z7J9 78 aa4.26□□□□□ -1.73
HDAC3-205ENST00000469550 KRTAP23-1A1A580 65 aa4.25□□□□□ -1.73
HDAC3-205ENST00000469550 A0A0A0MQY5 61 aa4.25□□□□□ -1.73
HDAC3-205ENST00000469550 KRTAP10-10P60014 251 aa4.23□□□□□ -1.73
HDAC3-205ENST00000469550 KRTAP19-6Q3LI70 58 aa4.19□□□□□ -1.74
HDAC3-205ENST00000469550 SPRR5A0A1B0GTR4 108 aa4.18□□□□□ -1.74
HDAC3-205ENST00000469550 MACF1Q9UPN3 7388 aaKnown RBP4.18□□□□□ -1.74
HDAC3-205ENST00000469550 TNP1P09430 55 aa4.17□□□□□ -1.74
HDAC3-205ENST00000469550 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
HDAC3-205ENST00000469550 KRTAP6-3Q3LI67 103 aa4.09□□□□□ -1.75
HDAC3-205ENST00000469550 NEBP20929 6669 aa3.99□□□□□ -1.77
HDAC3-205ENST00000469550 SPRR2GQ9BYE4 73 aa3.97□□□□□ -1.77
HDAC3-205ENST00000469550 MT1BP07438 61 aa3.91□□□□□ -1.78
HDAC3-205ENST00000469550 KRTAP19-8Q3LI54 63 aa3.9□□□□□ -1.79
HDAC3-205ENST00000469550 PRO2289Q9P1D8 64 aa3.89□□□□□ -1.79
HDAC3-205ENST00000469550 LCE3AQ5TA76 89 aa3.88□□□□□ -1.79
HDAC3-205ENST00000469550 MUC12Q9UKN1 5478 aa3.86□□□□□ -1.79
HDAC3-205ENST00000469550 INE1O15225 51 aa3.86□□□□□ -1.79
HDAC3-205ENST00000469550 KRTAP10-5P60370 271 aa3.86□□□□□ -1.79
HDAC3-205ENST00000469550 KRTAP8-1Q8IUC2 63 aa3.85□□□□□ -1.79
HDAC3-205ENST00000469550 KRTAP5-9P26371 169 aa3.85□□□□□ -1.79
HDAC3-205ENST00000469550 KRTAP20-1Q3LI63 56 aa3.84□□□□□ -1.79
HDAC3-205ENST00000469550 KMT2DO14686 5537 aa3.76□□□□□ -1.81
HDAC3-205ENST00000469550 MDN1Q9NU22 5596 aa3.74□□□□□ -1.81
HDAC3-205ENST00000469550 KRTAP12-3P60328 96 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms