RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 KRTAP3-3Q9BYR6 98 aa9.33□□□□□ -0.92
NPHP4-206ENST00000468253 SMIM20Q8N5G0 67 aa9.32□□□□□ -0.92
NPHP4-206ENST00000468253 TRAV7A0A075B6U4 112 aa9.26□□□□□ -0.93
NPHP4-206ENST00000468253 FAM236AA0A1B0GUQ0 79 aa9.25□□□□□ -0.93
NPHP4-206ENST00000468253 FAM236BA0A1B0GV22 79 aa9.25□□□□□ -0.93
NPHP4-206ENST00000468253 NDUFC1O43677 76 aa9.23□□□□□ -0.93
NPHP4-206ENST00000468253 SSPOA2VEC9 5147 aa9.23□□□□□ -0.93
NPHP4-206ENST00000468253 DMAC1Q96GE9 116 aa9.13□□□□□ -0.95
NPHP4-206ENST00000468253 H0YAA0 97 aa9.12□□□□□ -0.95
NPHP4-206ENST00000468253 KRTAP19-1Q8IUB9 90 aa9.1□□□□□ -0.95
NPHP4-206ENST00000468253 SPRR2GQ9BYE4 73 aa9.07□□□□□ -0.96
NPHP4-206ENST00000468253 CRIPTQ9P021 101 aa9.07□□□□□ -0.96
NPHP4-206ENST00000468253 SERP2Q8N6R1 65 aa9.04□□□□□ -0.96
NPHP4-206ENST00000468253 KRTAP19-6Q3LI70 58 aa9.03□□□□□ -0.96
NPHP4-206ENST00000468253 FCGBPQ9Y6R7 5405 aaPredicted RBP9.02□□□□□ -0.97
NPHP4-206ENST00000468253 ACYP2P14621 99 aa9.01□□□□□ -0.97
NPHP4-206ENST00000468253 KRTAP19-8Q3LI54 63 aa8.97□□□□□ -0.97
NPHP4-206ENST00000468253 SNURFQ9Y675 71 aa8.97□□□□□ -0.97
NPHP4-206ENST00000468253 ADM2Q7Z4H4 148 aa8.94□□□□□ -0.98
NPHP4-206ENST00000468253 C20orf197Q8N268 126 aa8.93□□□□□ -0.98
NPHP4-206ENST00000468253 SPANXA2-OT1Q8N9U9 137 aa8.92□□□□□ -0.98
NPHP4-206ENST00000468253 Q5VV11 94 aa8.91□□□□□ -0.98
NPHP4-206ENST00000468253 MT1BP07438 61 aa8.88□□□□□ -0.99
NPHP4-206ENST00000468253 SPTSSBQ8NFR3 76 aa8.85□□□□□ -0.99
NPHP4-206ENST00000468253 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.83□□□□□ -1
NPHP4-206ENST00000468253 COX7CP15954 63 aa8.82□□□□□ -1
NPHP4-206ENST00000468253 KRTAP3-2Q9BYR7 98 aa8.78□□□□□ -1
NPHP4-206ENST00000468253 CHKB-CPT1BH3BT56 60 aa8.77□□□□□ -1.01
NPHP4-206ENST00000468253 P0C880 135 aa8.76□□□□□ -1.01
NPHP4-206ENST00000468253 R4GN34 69 aa8.71□□□□□ -1.02
NPHP4-206ENST00000468253 A6NN06 94 aa8.68□□□□□ -1.02
NPHP4-206ENST00000468253 KRTAP10-5P60370 271 aa8.65□□□□□ -1.02
NPHP4-206ENST00000468253 KRTAP9-7A8MTY7 169 aa8.64□□□□□ -1.03
NPHP4-206ENST00000468253 H7BZZ5 65 aa8.63□□□□□ -1.03
NPHP4-206ENST00000468253 MACF1Q9UPN3 7388 aaKnown RBP8.63□□□□□ -1.03
NPHP4-206ENST00000468253 M0QZ58 72 aa8.62□□□□□ -1.03
NPHP4-206ENST00000468253 ANAPC13Q9BS18 74 aa8.61□□□□□ -1.03
NPHP4-206ENST00000468253 COA5Q86WW8 74 aa8.58□□□□□ -1.04
NPHP4-206ENST00000468253 PLAC4Q8WY50 150 aa8.57□□□□□ -1.04
NPHP4-206ENST00000468253 CYSTM1Q9H1C7 97 aa8.56□□□□□ -1.04
NPHP4-206ENST00000468253 SYNE2Q8WXH0 6885 aaKnown RBP8.48□□□□□ -1.05
NPHP4-206ENST00000468253 PRO2289Q9P1D8 64 aa8.46□□□□□ -1.06
NPHP4-206ENST00000468253 LINC01554Q52M75 96 aa8.45□□□□□ -1.06
NPHP4-206ENST00000468253 CCDC179H3BU77 68 aa8.42□□□□□ -1.06
NPHP4-206ENST00000468253 KRTAP6-3Q3LI67 103 aa8.42□□□□□ -1.06
NPHP4-206ENST00000468253 MT1XP80297 61 aa8.39□□□□□ -1.07
NPHP4-206ENST00000468253 SEC61GP60059 68 aa8.38□□□□□ -1.07
NPHP4-206ENST00000468253 SERP1Q9Y6X1 66 aa8.36□□□□□ -1.07
NPHP4-206ENST00000468253 ATP5EP56381 51 aaPredicted RBP8.31□□□□□ -1.08
NPHP4-206ENST00000468253 KRTAP13-4Q3LI77 160 aa8.28□□□□□ -1.08
NPHP4-206ENST00000468253 A0A1B0GU33 70 aa8.21□□□□□ -1.1
NPHP4-206ENST00000468253 KRTAP12-2P59991 146 aa8.2□□□□□ -1.1
NPHP4-206ENST00000468253 TMEM258P61165 79 aa8.16□□□□□ -1.1
NPHP4-206ENST00000468253 A0A1B0GU69 56 aa8.15□□□□□ -1.1
NPHP4-206ENST00000468253 KRTAP5-9P26371 169 aa8.14□□□□□ -1.11
NPHP4-206ENST00000468253 SPATA8Q6RVD6 105 aa8.09□□□□□ -1.11
NPHP4-206ENST00000468253 KMT2DO14686 5537 aa8.05□□□□□ -1.12
NPHP4-206ENST00000468253 MUC12Q9UKN1 5478 aa8.04□□□□□ -1.12
NPHP4-206ENST00000468253 A0A0D9SG42 100 aa8.04□□□□□ -1.12
NPHP4-206ENST00000468253 CAMK2N1Q7Z7J9 78 aa8.03□□□□□ -1.12
NPHP4-206ENST00000468253 PRR15LQ9BU68 103 aa8.02□□□□□ -1.13
NPHP4-206ENST00000468253 KRTAP10-12P60413 245 aa8.01□□□□□ -1.13
NPHP4-206ENST00000468253 LINC01558Q9Y6Z2 57 aa8.01□□□□□ -1.13
NPHP4-206ENST00000468253 SMIM26A0A096LP01 95 aa8□□□□□ -1.13
NPHP4-206ENST00000468253 NEBP20929 6669 aa7.99□□□□□ -1.13
NPHP4-206ENST00000468253 KRTAP10-7P60409 375 aaPredicted RBP7.99□□□□□ -1.13
NPHP4-206ENST00000468253 KRTAP8-1Q8IUC2 63 aa7.97□□□□□ -1.13
NPHP4-206ENST00000468253 KRTAP12-1P59990 96 aa7.93□□□□□ -1.14
NPHP4-206ENST00000468253 SPINT4Q6UDR6 99 aa7.93□□□□□ -1.14
NPHP4-206ENST00000468253 MDN1Q9NU22 5596 aa7.92□□□□□ -1.14
NPHP4-206ENST00000468253 KRTAP4-8A0A0G2JLE6 195 aa7.91□□□□□ -1.14
NPHP4-206ENST00000468253 KRTAP4-8Q9BYQ9 185 aa7.91□□□□□ -1.14
NPHP4-206ENST00000468253 SPRR2FQ96RM1 72 aa7.89□□□□□ -1.15
NPHP4-206ENST00000468253 A8MU10 97 aa7.83□□□□□ -1.16
NPHP4-206ENST00000468253 UQCR11O14957 56 aa7.76□□□□□ -1.17
NPHP4-206ENST00000468253 V9GYY9 64 aa7.73□□□□□ -1.17
NPHP4-206ENST00000468253 SPRR2EP22531 72 aa7.71□□□□□ -1.18
NPHP4-206ENST00000468253 SPRR2BP35325 72 aa7.71□□□□□ -1.18
NPHP4-206ENST00000468253 SPRR2AP35326 72 aa7.71□□□□□ -1.18
NPHP4-206ENST00000468253 LCE1AQ5T7P2 110 aa7.69□□□□□ -1.18
NPHP4-206ENST00000468253 Q1T7F1 81 aa7.67□□□□□ -1.18
NPHP4-206ENST00000468253 PCP4P48539 62 aa7.61□□□□□ -1.19
NPHP4-206ENST00000468253 KRTAP20-1Q3LI63 56 aa7.61□□□□□ -1.19
NPHP4-206ENST00000468253 MIR22HGQ0VDD5 57 aa7.59□□□□□ -1.19
NPHP4-206ENST00000468253 RPS28P62857 69 aaKnown RBP7.57□□□□□ -1.2
NPHP4-206ENST00000468253 C10orf95Q9H7T3 257 aa7.57□□□□□ -1.2
NPHP4-206ENST00000468253 KRTAP2-3P0C7H8 128 aa7.55□□□□□ -1.2
NPHP4-206ENST00000468253 KRTAP2-4Q9BYR9 128 aa7.55□□□□□ -1.2
NPHP4-206ENST00000468253 PSPHP1O15172 72 aa7.54□□□□□ -1.2
NPHP4-206ENST00000468253 TNP1P09430 55 aa7.52□□□□□ -1.21
NPHP4-206ENST00000468253 KRTAP19-7Q3SYF9 63 aa7.51□□□□□ -1.21
NPHP4-206ENST00000468253 SPRR2DP22532 72 aa7.45□□□□□ -1.22
NPHP4-206ENST00000468253 MT1EP04732 61 aa7.43□□□□□ -1.22
NPHP4-206ENST00000468253 K7ERS5 55 aa7.42□□□□□ -1.22
NPHP4-206ENST00000468253 KRTAP19-5Q3LI72 72 aa7.37□□□□□ -1.23
NPHP4-206ENST00000468253 KRTAP2-2Q9BYT5 123 aa7.33□□□□□ -1.24
NPHP4-206ENST00000468253 KRTAP2-1Q9BYU5 128 aa7.33□□□□□ -1.24
NPHP4-206ENST00000468253 A6NED7 52 aa7.32□□□□□ -1.24
NPHP4-206ENST00000468253 LCE3AQ5TA76 89 aa7.32□□□□□ -1.24
NPHP4-206ENST00000468253 LCE5AQ5TCM9 118 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms