RNA–Protein interactions for RNA: ENST00000468117.1

TMEM53-207, Transcript of transmembrane protein 53, humanhuman

TSL 3

Gene TMEM53, Length 2,017 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-207ENST00000468117 LCA10Q71F78 164 aa10.23□□□□□ -0.77
TMEM53-207ENST00000468117 S4R3F8 94 aa10.23□□□□□ -0.77
TMEM53-207ENST00000468117 SPTSSBQ8NFR3 76 aa10.19□□□□□ -0.78
TMEM53-207ENST00000468117 KRTAP3-3Q9BYR6 98 aa10.19□□□□□ -0.78
TMEM53-207ENST00000468117 KRTAP19-2Q3LHN2 52 aa10.18□□□□□ -0.78
TMEM53-207ENST00000468117 V9GYY9 64 aa10.18□□□□□ -0.78
TMEM53-207ENST00000468117 RNF213Q63HN8 5207 aa10.18□□□□□ -0.78
TMEM53-207ENST00000468117 LINC01558Q9Y6Z2 57 aa10.16□□□□□ -0.78
TMEM53-207ENST00000468117 PSPHP1O15172 72 aa10.14□□□□□ -0.79
TMEM53-207ENST00000468117 PRR15LQ9BU68 103 aa10.11□□□□□ -0.79
TMEM53-207ENST00000468117 A0A1B0GU69 56 aa10.03□□□□□ -0.8
TMEM53-207ENST00000468117 FLGP20930 4061 aaPredicted RBP10.02□□□□□ -0.8
TMEM53-207ENST00000468117 Q5VV11 94 aa10.02□□□□□ -0.81
TMEM53-207ENST00000468117 CSAG1Q6PB30 78 aa9.99□□□□□ -0.81
TMEM53-207ENST00000468117 FAT4Q6V0I7 4981 aa9.97□□□□□ -0.81
TMEM53-207ENST00000468117 SEC61GP60059 68 aa9.95□□□□□ -0.82
TMEM53-207ENST00000468117 LCE2CQ5TA81 110 aa9.95□□□□□ -0.82
TMEM53-207ENST00000468117 KRTAP3-2Q9BYR7 98 aa9.82□□□□□ -0.84
TMEM53-207ENST00000468117 KRTAP10-6P60371 365 aaPredicted RBP9.8□□□□□ -0.84
TMEM53-207ENST00000468117 A6NED7 52 aa9.8□□□□□ -0.84
TMEM53-207ENST00000468117 ADM2Q7Z4H4 148 aa9.8□□□□□ -0.84
TMEM53-207ENST00000468117 P0C880 135 aa9.76□□□□□ -0.85
TMEM53-207ENST00000468117 MT1HP80294 61 aa9.75□□□□□ -0.85
TMEM53-207ENST00000468117 A0A1B0GU33 70 aa9.73□□□□□ -0.85
TMEM53-207ENST00000468117 H0YAA0 97 aa9.73□□□□□ -0.85
TMEM53-207ENST00000468117 UQCR11O14957 56 aa9.71□□□□□ -0.86
TMEM53-207ENST00000468117 BRK1Q8WUW1 75 aa9.71□□□□□ -0.86
TMEM53-207ENST00000468117 M0R2T5 61 aa9.68□□□□□ -0.86
TMEM53-207ENST00000468117 A8MU10 97 aa9.65□□□□□ -0.86
TMEM53-207ENST00000468117 MIR22HGQ0VDD5 57 aa9.61□□□□□ -0.87
TMEM53-207ENST00000468117 SPATA8Q6RVD6 105 aa9.61□□□□□ -0.87
TMEM53-207ENST00000468117 CDC42SE1Q9NRR8 79 aa9.6□□□□□ -0.87
TMEM53-207ENST00000468117 KRTAP13-4Q3LI77 160 aa9.56□□□□□ -0.88
TMEM53-207ENST00000468117 LORP23490 312 aaPredicted RBP9.52□□□□□ -0.89
TMEM53-207ENST00000468117 R4GN34 69 aa9.44□□□□□ -0.9
TMEM53-207ENST00000468117 M0QZ58 72 aa9.44□□□□□ -0.9
TMEM53-207ENST00000468117 PRO0628Q9UI54 55 aa9.44□□□□□ -0.9
TMEM53-207ENST00000468117 A0A0D9SG42 100 aa9.4□□□□□ -0.9
TMEM53-207ENST00000468117 KRTAP9-8Q9BYQ0 159 aa9.39□□□□□ -0.91
TMEM53-207ENST00000468117 MT2AP02795 61 aa9.36□□□□□ -0.91
TMEM53-207ENST00000468117 LCE2AQ5TA79 106 aaPredicted RBP9.35□□□□□ -0.91
TMEM53-207ENST00000468117 MT1FP04733 61 aa9.32□□□□□ -0.92
TMEM53-207ENST00000468117 LINC01554Q52M75 96 aa9.31□□□□□ -0.92
TMEM53-207ENST00000468117 KRTAP10-10P60014 251 aa9.29□□□□□ -0.92
TMEM53-207ENST00000468117 CRIPTQ9P021 101 aa9.29□□□□□ -0.92
TMEM53-207ENST00000468117 KRTAP12-1P59990 96 aa9.17□□□□□ -0.94
TMEM53-207ENST00000468117 KRTAP12-2P59991 146 aa9.17□□□□□ -0.94
TMEM53-207ENST00000468117 PMAIP1Q13794 54 aa9.16□□□□□ -0.94
TMEM53-207ENST00000468117 SPINT4Q6UDR6 99 aa9.16□□□□□ -0.94
TMEM53-207ENST00000468117 KRTAP19-1Q8IUB9 90 aa9.15□□□□□ -0.94
TMEM53-207ENST00000468117 SPRR2GQ9BYE4 73 aa9.15□□□□□ -0.94
TMEM53-207ENST00000468117 K7ERS5 55 aa9.14□□□□□ -0.95
TMEM53-207ENST00000468117 A6NN06 94 aa9.09□□□□□ -0.95
TMEM53-207ENST00000468117 KRTAP9-3Q9BYQ3 159 aa9.04□□□□□ -0.96
TMEM53-207ENST00000468117 KRTAP19-8Q3LI54 63 aa8.9□□□□□ -0.99
TMEM53-207ENST00000468117 PLAC4Q8WY50 150 aa8.85□□□□□ -0.99
TMEM53-207ENST00000468117 CAMK2N1Q7Z7J9 78 aa8.84□□□□□ -0.99
TMEM53-207ENST00000468117 LCE2BO14633 110 aa8.81□□□□□ -1
TMEM53-207ENST00000468117 MT1BP07438 61 aa8.81□□□□□ -1
TMEM53-207ENST00000468117 ROMO1P60602 79 aa8.78□□□□□ -1
TMEM53-207ENST00000468117 KTN1-AS1Q86SY8 53 aa8.75□□□□□ -1.01
TMEM53-207ENST00000468117 C10orf95Q9H7T3 257 aa8.7□□□□□ -1.02
TMEM53-207ENST00000468117 USH2AO75445 5202 aa8.67□□□□□ -1.02
TMEM53-207ENST00000468117 PRAC1Q96KF2 57 aa8.62□□□□□ -1.03
TMEM53-207ENST00000468117 SVIPQ8NHG7 77 aa8.57□□□□□ -1.04
TMEM53-207ENST00000468117 MT1XP80297 61 aa8.54□□□□□ -1.04
TMEM53-207ENST00000468117 KRTAP10-5P60370 271 aa8.52□□□□□ -1.05
TMEM53-207ENST00000468117 LCE2DQ5TA82 110 aaPredicted RBP8.44□□□□□ -1.06
TMEM53-207ENST00000468117 FSIP2Q5CZC0 6907 aa8.43□□□□□ -1.06
TMEM53-207ENST00000468117 KRTAP25-1Q3LHN0 102 aa8.4□□□□□ -1.06
TMEM53-207ENST00000468117 TNP1P09430 55 aa8.39□□□□□ -1.07
TMEM53-207ENST00000468117 PRO2289Q9P1D8 64 aa8.39□□□□□ -1.07
TMEM53-207ENST00000468117 SSPOA2VEC9 5147 aa8.38□□□□□ -1.07
TMEM53-207ENST00000468117 KRTAP19-6Q3LI70 58 aa8.22□□□□□ -1.09
TMEM53-207ENST00000468117 KRTAP10-7P60409 375 aaPredicted RBP8.22□□□□□ -1.09
TMEM53-207ENST00000468117 KRTAP9-2Q9BYQ4 174 aa8.17□□□□□ -1.1
TMEM53-207ENST00000468117 PP632Q6XCG6 107 aa8.1□□□□□ -1.11
TMEM53-207ENST00000468117 KRTAP10-12P60413 245 aa8.09□□□□□ -1.11
TMEM53-207ENST00000468117 KRTAP23-1A1A580 65 aa8.07□□□□□ -1.12
TMEM53-207ENST00000468117 LCE3AQ5TA76 89 aa8.07□□□□□ -1.12
TMEM53-207ENST00000468117 KMT2DO14686 5537 aa8.03□□□□□ -1.12
TMEM53-207ENST00000468117 FCGBPQ9Y6R7 5405 aaPredicted RBP8.01□□□□□ -1.13
TMEM53-207ENST00000468117 KRTAP4-8A0A0G2JLE6 195 aa7.92□□□□□ -1.14
TMEM53-207ENST00000468117 KRTAP4-8Q9BYQ9 185 aa7.92□□□□□ -1.14
TMEM53-207ENST00000468117 CRCT1Q9UGL9 99 aa7.88□□□□□ -1.15
TMEM53-207ENST00000468117 KRTAP8-1Q8IUC2 63 aa7.86□□□□□ -1.15
TMEM53-207ENST00000468117 KRTAP12-3P60328 96 aa7.74□□□□□ -1.17
TMEM53-207ENST00000468117 KRTAP19-5Q3LI72 72 aa7.72□□□□□ -1.17
TMEM53-207ENST00000468117 MACF1Q9UPN3 7388 aaKnown RBP7.67□□□□□ -1.18
TMEM53-207ENST00000468117 KRTAP19-7Q3SYF9 63 aa7.61□□□□□ -1.19
TMEM53-207ENST00000468117 KRTAP15-1Q3LI76 137 aa7.57□□□□□ -1.2
TMEM53-207ENST00000468117 KRTAP9-6A0A140TA67 174 aa7.51□□□□□ -1.21
TMEM53-207ENST00000468117 MT1EP04732 61 aa7.47□□□□□ -1.21
TMEM53-207ENST00000468117 SYNE2Q8WXH0 6885 aaKnown RBP7.46□□□□□ -1.21
TMEM53-207ENST00000468117 MUC12Q9UKN1 5478 aa7.39□□□□□ -1.23
TMEM53-207ENST00000468117 SPRR2FQ96RM1 72 aa7.36□□□□□ -1.23
TMEM53-207ENST00000468117 MT1LQ93083 61 aa7.32□□□□□ -1.24
TMEM53-207ENST00000468117 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.28□□□□□ -1.24
TMEM53-207ENST00000468117 KRTAP5-9P26371 169 aa7.23□□□□□ -1.25
TMEM53-207ENST00000468117 LCE3CQ5T5A8 94 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms