RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 H7BZZ5 65 aa7.19□□□□□ -1.26
CXCR4-203ENST00000466288 RPS28P62857 69 aaKnown RBP7.18□□□□□ -1.26
CXCR4-203ENST00000466288 A8MUU9 505 aa7.17□□□□□ -1.26
CXCR4-203ENST00000466288 IGHV6-1A0A0B4J1U7 121 aa7.17□□□□□ -1.26
CXCR4-203ENST00000466288 MRPL34Q9BQ48 92 aaKnown RBP7.17□□□□□ -1.26
CXCR4-203ENST00000466288 CYSTM1Q9H1C7 97 aa7.17□□□□□ -1.26
CXCR4-203ENST00000466288 SNURFQ9Y675 71 aa7.17□□□□□ -1.26
CXCR4-203ENST00000466288 ZCCHC13Q8WW36 166 aaKnown RBP7.15□□□□□ -1.27
CXCR4-203ENST00000466288 FAM236DA0A1B0GTK5 79 aa7.14□□□□□ -1.27
CXCR4-203ENST00000466288 FAM236CP0DP71 79 aa7.14□□□□□ -1.27
CXCR4-203ENST00000466288 MUC12Q9UKN1 5478 aa7.14□□□□□ -1.27
CXCR4-203ENST00000466288 TRAV22A0A0B4J277 110 aa7.11□□□□□ -1.27
CXCR4-203ENST00000466288 KRTAP16-1A8MUX0 517 aa7.11□□□□□ -1.27
CXCR4-203ENST00000466288 MPLKIPQ8TAP9 179 aa7.11□□□□□ -1.27
CXCR4-203ENST00000466288 H0Y9P7 68 aa7.11□□□□□ -1.27
CXCR4-203ENST00000466288 LINC00313P59037 77 aa7.11□□□□□ -1.27
CXCR4-203ENST00000466288 KRTAP4-8A0A0G2JLE6 195 aa7.1□□□□□ -1.27
CXCR4-203ENST00000466288 HRES1P13985 223 aa7.07□□□□□ -1.28
CXCR4-203ENST00000466288 LINC00208Q96KT6 92 aa7.07□□□□□ -1.28
CXCR4-203ENST00000466288 RBM12B-AS1Q9P1G2 102 aa7.06□□□□□ -1.28
CXCR4-203ENST00000466288 SERP1Q9Y6X1 66 aa7.06□□□□□ -1.28
CXCR4-203ENST00000466288 NDUFS5O43920 106 aa7.05□□□□□ -1.28
CXCR4-203ENST00000466288 SPANXA2-OT1Q8N9U9 137 aa7.05□□□□□ -1.28
CXCR4-203ENST00000466288 Q8N9P0 234 aaPredicted RBP7.04□□□□□ -1.28
CXCR4-203ENST00000466288 C1orf64Q8NEQ6 169 aa7.04□□□□□ -1.28
CXCR4-203ENST00000466288 NOTCH2NLQ7Z3S9 236 aa7.03□□□□□ -1.28
CXCR4-203ENST00000466288 LOC101927531A0A1B0GV80 90 aa7.01□□□□□ -1.29
CXCR4-203ENST00000466288 CYP4F30PQ9H0H9 118 aa7.01□□□□□ -1.29
CXCR4-203ENST00000466288 KRTAP20-1Q3LI63 56 aa6.95□□□□□ -1.3
CXCR4-203ENST00000466288 H3BS24 57 aa6.92□□□□□ -1.3
CXCR4-203ENST00000466288 LCE1DQ5T752 114 aa6.92□□□□□ -1.3
CXCR4-203ENST00000466288 SMIM26A0A096LP01 95 aa6.92□□□□□ -1.3
CXCR4-203ENST00000466288 Q5W150 140 aa6.9□□□□□ -1.31
CXCR4-203ENST00000466288 MDN1Q9NU22 5596 aa6.88□□□□□ -1.31
CXCR4-203ENST00000466288 IGKV2-30P06310 120 aa6.86□□□□□ -1.31
CXCR4-203ENST00000466288 KRTAP4-7Q9BYR0 210 aa6.85□□□□□ -1.31
CXCR4-203ENST00000466288 LCE4AQ5TA78 99 aa6.8□□□□□ -1.32
CXCR4-203ENST00000466288 KMT2DO14686 5537 aa6.8□□□□□ -1.32
CXCR4-203ENST00000466288 SPINK7P58062 85 aa6.78□□□□□ -1.32
CXCR4-203ENST00000466288 C7orf65Q6ZTY9 151 aa6.78□□□□□ -1.32
CXCR4-203ENST00000466288 V9GYY9 64 aa6.78□□□□□ -1.32
CXCR4-203ENST00000466288 ACYP2P14621 99 aa6.76□□□□□ -1.33
CXCR4-203ENST00000466288 KRTAP19-4Q3LI73 84 aa6.75□□□□□ -1.33
CXCR4-203ENST00000466288 COA5Q86WW8 74 aa6.74□□□□□ -1.33
CXCR4-203ENST00000466288 DMAC1Q96GE9 116 aa6.74□□□□□ -1.33
CXCR4-203ENST00000466288 Q1T7F1 81 aa6.73□□□□□ -1.33
CXCR4-203ENST00000466288 IGKV2D-30A0A075B6S6 120 aa6.72□□□□□ -1.33
CXCR4-203ENST00000466288 A6NN06 94 aa6.72□□□□□ -1.33
CXCR4-203ENST00000466288 KRTAP5-9P26371 169 aa6.72□□□□□ -1.33
CXCR4-203ENST00000466288 A8MUN3 132 aa6.71□□□□□ -1.34
CXCR4-203ENST00000466288 KRTAP4-9Q9BYQ8 210 aa6.71□□□□□ -1.34
CXCR4-203ENST00000466288 C4orf26Q17RF5 130 aa6.64□□□□□ -1.35
CXCR4-203ENST00000466288 KRTAP2-3P0C7H8 128 aa6.63□□□□□ -1.35
CXCR4-203ENST00000466288 KRTAP2-4Q9BYR9 128 aa6.63□□□□□ -1.35
CXCR4-203ENST00000466288 MT1BP07438 61 aa6.62□□□□□ -1.35
CXCR4-203ENST00000466288 CHKB-CPT1BH3BT56 60 aa6.61□□□□□ -1.35
CXCR4-203ENST00000466288 H1FX-AS1Q4G0G2 97 aa6.59□□□□□ -1.36
CXCR4-203ENST00000466288 LINC01558Q9Y6Z2 57 aa6.58□□□□□ -1.36
CXCR4-203ENST00000466288 KRTAP10-5P60370 271 aa6.57□□□□□ -1.36
CXCR4-203ENST00000466288 KRTAP4-2Q9BYR5 136 aa6.56□□□□□ -1.36
CXCR4-203ENST00000466288 SPTSSBQ8NFR3 76 aa6.55□□□□□ -1.36
CXCR4-203ENST00000466288 Q5VV11 94 aa6.53□□□□□ -1.36
CXCR4-203ENST00000466288 KRTAP19-8Q3LI54 63 aa6.52□□□□□ -1.37
CXCR4-203ENST00000466288 PRR15LQ9BU68 103 aa6.48□□□□□ -1.37
CXCR4-203ENST00000466288 KRTAP4-11Q9BYQ6 195 aa6.48□□□□□ -1.37
CXCR4-203ENST00000466288 PSPHP1O15172 72 aa6.47□□□□□ -1.37
CXCR4-203ENST00000466288 SPRR2GQ9BYE4 73 aa6.47□□□□□ -1.37
CXCR4-203ENST00000466288 LCE5AQ5TCM9 118 aa6.43□□□□□ -1.38
CXCR4-203ENST00000466288 KRTAP3-1Q9BYR8 98 aa6.43□□□□□ -1.38
CXCR4-203ENST00000466288 PRO0628Q9UI54 55 aa6.41□□□□□ -1.38
CXCR4-203ENST00000466288 A0A1B0GU69 56 aa6.41□□□□□ -1.38
CXCR4-203ENST00000466288 SPRR2EP22531 72 aa6.4□□□□□ -1.39
CXCR4-203ENST00000466288 SPRR2BP35325 72 aa6.4□□□□□ -1.39
CXCR4-203ENST00000466288 SPRR2AP35326 72 aa6.4□□□□□ -1.39
CXCR4-203ENST00000466288 SVIPQ8NHG7 77 aa6.4□□□□□ -1.39
CXCR4-203ENST00000466288 KRTAP2-2Q9BYT5 123 aa6.4□□□□□ -1.39
CXCR4-203ENST00000466288 KRTAP2-1Q9BYU5 128 aa6.4□□□□□ -1.39
CXCR4-203ENST00000466288 SEC61GP60059 68 aa6.38□□□□□ -1.39
CXCR4-203ENST00000466288 BRK1Q8WUW1 75 aa6.38□□□□□ -1.39
CXCR4-203ENST00000466288 SPRR2FQ96RM1 72 aa6.37□□□□□ -1.39
CXCR4-203ENST00000466288 A6NED7 52 aa6.34□□□□□ -1.39
CXCR4-203ENST00000466288 CDC42SE1Q9NRR8 79 aa6.31□□□□□ -1.4
CXCR4-203ENST00000466288 UQCR11O14957 56 aa6.28□□□□□ -1.4
CXCR4-203ENST00000466288 S4R3F8 94 aa6.28□□□□□ -1.4
CXCR4-203ENST00000466288 LCE1AQ5T7P2 110 aa6.27□□□□□ -1.41
CXCR4-203ENST00000466288 GPR98Q8WXG9 6306 aa6.24□□□□□ -1.41
CXCR4-203ENST00000466288 CSAG1Q6PB30 78 aa6.23□□□□□ -1.41
CXCR4-203ENST00000466288 SPATA8Q6RVD6 105 aa6.22□□□□□ -1.41
CXCR4-203ENST00000466288 LCA10Q71F78 164 aa6.22□□□□□ -1.41
CXCR4-203ENST00000466288 SPRR2DP22532 72 aa6.19□□□□□ -1.42
CXCR4-203ENST00000466288 MIR22HGQ0VDD5 57 aa6.18□□□□□ -1.42
CXCR4-203ENST00000466288 KRTAP8-1Q8IUC2 63 aa6.16□□□□□ -1.42
CXCR4-203ENST00000466288 A0A1B0GU33 70 aa6.15□□□□□ -1.42
CXCR4-203ENST00000466288 CRIPTQ9P021 101 aa6.12□□□□□ -1.43
CXCR4-203ENST00000466288 H0YAA0 97 aa6.11□□□□□ -1.43
CXCR4-203ENST00000466288 A8MU10 97 aa6.08□□□□□ -1.44
CXCR4-203ENST00000466288 MT1XP80297 61 aa6.08□□□□□ -1.44
CXCR4-203ENST00000466288 PMAIP1Q13794 54 aa6.08□□□□□ -1.44
CXCR4-203ENST00000466288 PRO2289Q9P1D8 64 aa6.06□□□□□ -1.44
CXCR4-203ENST00000466288 KRTAP12-2P59991 146 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms