RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 HERC2O95714 4834 aa9.68□□□□□ -0.86
COL9A3-205ENST00000466192 RPL37P61927 97 aaKnown RBP9.67□□□□□ -0.86
COL9A3-205ENST00000466192 SPATA8Q6RVD6 105 aa9.58□□□□□ -0.88
COL9A3-205ENST00000466192 PRAC1Q96KF2 57 aa9.58□□□□□ -0.88
COL9A3-205ENST00000466192 A0A1B0GU69 56 aa9.57□□□□□ -0.88
COL9A3-205ENST00000466192 TPRXLQ17RH7 258 aa9.57□□□□□ -0.88
COL9A3-205ENST00000466192 LPAP08519 4548 aa9.56□□□□□ -0.88
COL9A3-205ENST00000466192 KRTAP3-1Q9BYR8 98 aa9.56□□□□□ -0.88
COL9A3-205ENST00000466192 LRP2P98164 4655 aa9.56□□□□□ -0.88
COL9A3-205ENST00000466192 ADM2Q7Z4H4 148 aa9.53□□□□□ -0.88
COL9A3-205ENST00000466192 J3QL48 77 aa9.51□□□□□ -0.89
COL9A3-205ENST00000466192 MIR22HGQ0VDD5 57 aa9.48□□□□□ -0.89
COL9A3-205ENST00000466192 UQCR11O14957 56 aa9.47□□□□□ -0.89
COL9A3-205ENST00000466192 LINC01554Q52M75 96 aa9.47□□□□□ -0.89
COL9A3-205ENST00000466192 COX6B2Q6YFQ2 88 aa9.47□□□□□ -0.89
COL9A3-205ENST00000466192 PCLOQ9Y6V0 5065 aa9.33□□□□□ -0.92
COL9A3-205ENST00000466192 CSAG1Q6PB30 78 aa9.27□□□□□ -0.92
COL9A3-205ENST00000466192 HERC1Q15751 4861 aa9.21□□□□□ -0.93
COL9A3-205ENST00000466192 SEC61BP60468 96 aaKnown RBP9.21□□□□□ -0.94
COL9A3-205ENST00000466192 KRTAP3-3Q9BYR6 98 aa9.19□□□□□ -0.94
COL9A3-205ENST00000466192 MUC17Q685J3 4493 aa9.18□□□□□ -0.94
COL9A3-205ENST00000466192 S4R3F8 94 aa9.17□□□□□ -0.94
COL9A3-205ENST00000466192 H1FX-AS1Q4G0G2 97 aa9.13□□□□□ -0.95
COL9A3-205ENST00000466192 H3BS24 57 aa9.12□□□□□ -0.95
COL9A3-205ENST00000466192 KRTAP4-1Q9BYQ7 146 aa9.11□□□□□ -0.95
COL9A3-205ENST00000466192 HMCN2Q8NDA2 5059 aa9.1□□□□□ -0.95
COL9A3-205ENST00000466192 A0A1B0GU33 70 aa9.09□□□□□ -0.95
COL9A3-205ENST00000466192 H0YAA0 97 aa9.06□□□□□ -0.96
COL9A3-205ENST00000466192 KRTAP25-1Q3LHN0 102 aa9□□□□□ -0.97
COL9A3-205ENST00000466192 KRTAP10-6P60371 365 aaPredicted RBP8.97□□□□□ -0.97
COL9A3-205ENST00000466192 MUC2Q02817 5179 aa8.94□□□□□ -0.98
COL9A3-205ENST00000466192 KRTAP3-2Q9BYR7 98 aa8.94□□□□□ -0.98
COL9A3-205ENST00000466192 KRTAP19-2Q3LHN2 52 aa8.89□□□□□ -0.99
COL9A3-205ENST00000466192 ROMO1P60602 79 aa8.89□□□□□ -0.99
COL9A3-205ENST00000466192 P0C880 135 aa8.88□□□□□ -0.99
COL9A3-205ENST00000466192 KRTAP13-4Q3LI77 160 aa8.83□□□□□ -1
COL9A3-205ENST00000466192 K7ERS5 55 aa8.78□□□□□ -1
COL9A3-205ENST00000466192 FLGP20930 4061 aaPredicted RBP8.75□□□□□ -1.01
COL9A3-205ENST00000466192 A0A0D9SG42 100 aa8.73□□□□□ -1.01
COL9A3-205ENST00000466192 UBR4Q5T4S7 5183 aa8.68□□□□□ -1.02
COL9A3-205ENST00000466192 CRIPTQ9P021 101 aa8.67□□□□□ -1.02
COL9A3-205ENST00000466192 RNF213Q63HN8 5207 aa8.65□□□□□ -1.02
COL9A3-205ENST00000466192 LCE2CQ5TA81 110 aa8.58□□□□□ -1.04
COL9A3-205ENST00000466192 M0QZ58 72 aa8.58□□□□□ -1.04
COL9A3-205ENST00000466192 FAT4Q6V0I7 4981 aa8.56□□□□□ -1.04
COL9A3-205ENST00000466192 KRTAP12-2P59991 146 aa8.51□□□□□ -1.05
COL9A3-205ENST00000466192 R4GN34 69 aa8.5□□□□□ -1.05
COL9A3-205ENST00000466192 LORP23490 312 aaPredicted RBP8.48□□□□□ -1.05
COL9A3-205ENST00000466192 SPINT4Q6UDR6 99 aa8.48□□□□□ -1.05
COL9A3-205ENST00000466192 KRTAP12-1P59990 96 aa8.46□□□□□ -1.05
COL9A3-205ENST00000466192 MT1HP80294 61 aa8.37□□□□□ -1.07
COL9A3-205ENST00000466192 C10orf95Q9H7T3 257 aa8.33□□□□□ -1.08
COL9A3-205ENST00000466192 KRTAP15-1Q3LI76 137 aa8.32□□□□□ -1.08
COL9A3-205ENST00000466192 M0R2T5 61 aa8.3□□□□□ -1.08
COL9A3-205ENST00000466192 NDUFAF8A1L188 74 aa8.21□□□□□ -1.09
COL9A3-205ENST00000466192 KRTAP9-8Q9BYQ0 159 aa8.11□□□□□ -1.11
COL9A3-205ENST00000466192 MT2AP02795 61 aa8.11□□□□□ -1.11
COL9A3-205ENST00000466192 MT1FP04733 61 aa8.08□□□□□ -1.12
COL9A3-205ENST00000466192 SPRR2GQ9BYE4 73 aa8.04□□□□□ -1.12
COL9A3-205ENST00000466192 KRTAP10-10P60014 251 aa8.04□□□□□ -1.12
COL9A3-205ENST00000466192 KRTAP19-1Q8IUB9 90 aa8.03□□□□□ -1.12
COL9A3-205ENST00000466192 CAMK2N1Q7Z7J9 78 aa8.01□□□□□ -1.13
COL9A3-205ENST00000466192 LCE2AQ5TA79 106 aaPredicted RBP7.86□□□□□ -1.15
COL9A3-205ENST00000466192 PLAC4Q8WY50 150 aa7.8□□□□□ -1.16
COL9A3-205ENST00000466192 KRTAP9-3Q9BYQ3 159 aa7.8□□□□□ -1.16
COL9A3-205ENST00000466192 KRTAP19-8Q3LI54 63 aa7.78□□□□□ -1.16
COL9A3-205ENST00000466192 MT1BP07438 61 aa7.7□□□□□ -1.18
COL9A3-205ENST00000466192 TNP1P09430 55 aa7.65□□□□□ -1.18
COL9A3-205ENST00000466192 PP632Q6XCG6 107 aa7.61□□□□□ -1.19
COL9A3-205ENST00000466192 LCE2BO14633 110 aa7.57□□□□□ -1.2
COL9A3-205ENST00000466192 LUZP6Q538Z0 58 aa7.53□□□□□ -1.2
COL9A3-205ENST00000466192 MT1XP80297 61 aa7.51□□□□□ -1.21
COL9A3-205ENST00000466192 KRTAP10-5P60370 271 aa7.5□□□□□ -1.21
COL9A3-205ENST00000466192 A0A0A0MQY5 61 aa7.48□□□□□ -1.21
COL9A3-205ENST00000466192 KRTAP23-1A1A580 65 aa7.42□□□□□ -1.22
COL9A3-205ENST00000466192 USH2AO75445 5202 aa7.41□□□□□ -1.22
COL9A3-205ENST00000466192 PRO2289Q9P1D8 64 aa7.31□□□□□ -1.24
COL9A3-205ENST00000466192 LCE3AQ5TA76 89 aa7.3□□□□□ -1.24
COL9A3-205ENST00000466192 KRTAP10-7P60409 375 aaPredicted RBP7.25□□□□□ -1.25
COL9A3-205ENST00000466192 SPRR5A0A1B0GTR4 108 aa7.22□□□□□ -1.25
COL9A3-205ENST00000466192 KRTAP10-12P60413 245 aa7.18□□□□□ -1.26
COL9A3-205ENST00000466192 SSPOA2VEC9 5147 aa7.14□□□□□ -1.27
COL9A3-205ENST00000466192 KRTAP8-1Q8IUC2 63 aa7.1□□□□□ -1.27
COL9A3-205ENST00000466192 FSIP2Q5CZC0 6907 aa7.03□□□□□ -1.28
COL9A3-205ENST00000466192 KMT2DO14686 5537 aa7.01□□□□□ -1.29
COL9A3-205ENST00000466192 KRTAP19-6Q3LI70 58 aa6.98□□□□□ -1.29
COL9A3-205ENST00000466192 LCE2DQ5TA82 110 aaPredicted RBP6.98□□□□□ -1.29
COL9A3-205ENST00000466192 KRTAP12-3P60328 96 aa6.98□□□□□ -1.29
COL9A3-205ENST00000466192 KRTAP4-8A0A0G2JLE6 195 aa6.92□□□□□ -1.3
COL9A3-205ENST00000466192 KRTAP4-8Q9BYQ9 185 aa6.92□□□□□ -1.3
COL9A3-205ENST00000466192 KRTAP19-5Q3LI72 72 aa6.85□□□□□ -1.31
COL9A3-205ENST00000466192 FCGBPQ9Y6R7 5405 aaPredicted RBP6.75□□□□□ -1.33
COL9A3-205ENST00000466192 KRTAP19-7Q3SYF9 63 aa6.7□□□□□ -1.34
COL9A3-205ENST00000466192 INE1O15225 51 aa6.66□□□□□ -1.34
COL9A3-205ENST00000466192 KRTAP9-2Q9BYQ4 174 aa6.62□□□□□ -1.35
COL9A3-205ENST00000466192 MT1EP04732 61 aa6.55□□□□□ -1.36
COL9A3-205ENST00000466192 LCE3CQ5T5A8 94 aa6.54□□□□□ -1.36
COL9A3-205ENST00000466192 MT1LQ93083 61 aa6.45□□□□□ -1.38
COL9A3-205ENST00000466192 CRCT1Q9UGL9 99 aa6.42□□□□□ -1.38
COL9A3-205ENST00000466192 MACF1Q9UPN3 7388 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms