RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 FAM236BA0A1B0GV22 79 aa9.54□□□□□ -0.88
SKA3-205ENST00000465471 USH2AO75445 5202 aa9.51□□□□□ -0.89
SKA3-205ENST00000465471 CSAG1Q6PB30 78 aa9.5□□□□□ -0.89
SKA3-205ENST00000465471 A8MUN3 132 aa9.48□□□□□ -0.89
SKA3-205ENST00000465471 SMIM20Q8N5G0 67 aa9.48□□□□□ -0.89
SKA3-205ENST00000465471 TRAV7A0A075B6U4 112 aa9.46□□□□□ -0.9
SKA3-205ENST00000465471 SSPOA2VEC9 5147 aa9.37□□□□□ -0.91
SKA3-205ENST00000465471 DMAC1Q96GE9 116 aa9.34□□□□□ -0.91
SKA3-205ENST00000465471 NDUFC1O43677 76 aa9.33□□□□□ -0.92
SKA3-205ENST00000465471 KRTAP19-1Q8IUB9 90 aa9.26□□□□□ -0.93
SKA3-205ENST00000465471 SERP2Q8N6R1 65 aa9.26□□□□□ -0.93
SKA3-205ENST00000465471 H0YAA0 97 aa9.24□□□□□ -0.93
SKA3-205ENST00000465471 SNURFQ9Y675 71 aa9.22□□□□□ -0.93
SKA3-205ENST00000465471 SPRR2GQ9BYE4 73 aa9.19□□□□□ -0.94
SKA3-205ENST00000465471 C20orf197Q8N268 126 aa9.17□□□□□ -0.94
SKA3-205ENST00000465471 ACYP2P14621 99 aa9.12□□□□□ -0.95
SKA3-205ENST00000465471 CRIPTQ9P021 101 aa9.12□□□□□ -0.95
SKA3-205ENST00000465471 KRTAP19-6Q3LI70 58 aa9.11□□□□□ -0.95
SKA3-205ENST00000465471 SPANXA2-OT1Q8N9U9 137 aa9.1□□□□□ -0.95
SKA3-205ENST00000465471 FCGBPQ9Y6R7 5405 aaPredicted RBP9.09□□□□□ -0.95
SKA3-205ENST00000465471 KRTAP19-8Q3LI54 63 aa9.09□□□□□ -0.95
SKA3-205ENST00000465471 ADM2Q7Z4H4 148 aa9.08□□□□□ -0.96
SKA3-205ENST00000465471 LOC100996750A0A140TA64 210 aa9.06□□□□□ -0.96
SKA3-205ENST00000465471 COX7CP15954 63 aa9.06□□□□□ -0.96
SKA3-205ENST00000465471 KRTAP4-6Q9BYQ5 205 aa9.06□□□□□ -0.96
SKA3-205ENST00000465471 MT1BP07438 61 aa9.04□□□□□ -0.96
SKA3-205ENST00000465471 Q5VV11 94 aa9□□□□□ -0.97
SKA3-205ENST00000465471 P0C880 135 aa8.95□□□□□ -0.98
SKA3-205ENST00000465471 SPTSSBQ8NFR3 76 aa8.94□□□□□ -0.98
SKA3-205ENST00000465471 CHKB-CPT1BH3BT56 60 aa8.92□□□□□ -0.98
SKA3-205ENST00000465471 CYSTM1Q9H1C7 97 aa8.91□□□□□ -0.98
SKA3-205ENST00000465471 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.9□□□□□ -0.98
SKA3-205ENST00000465471 H7BZZ5 65 aa8.88□□□□□ -0.99
SKA3-205ENST00000465471 ANAPC13Q9BS18 74 aa8.87□□□□□ -0.99
SKA3-205ENST00000465471 R4GN34 69 aa8.82□□□□□ -1
SKA3-205ENST00000465471 COA5Q86WW8 74 aa8.8□□□□□ -1
SKA3-205ENST00000465471 M0QZ58 72 aa8.76□□□□□ -1.01
SKA3-205ENST00000465471 KRTAP10-5P60370 271 aa8.76□□□□□ -1.01
SKA3-205ENST00000465471 A6NN06 94 aa8.75□□□□□ -1.01
SKA3-205ENST00000465471 MACF1Q9UPN3 7388 aaKnown RBP8.72□□□□□ -1.01
SKA3-205ENST00000465471 CCDC179H3BU77 68 aa8.72□□□□□ -1.01
SKA3-205ENST00000465471 KRTAP9-7A8MTY7 169 aa8.67□□□□□ -1.02
SKA3-205ENST00000465471 PLAC4Q8WY50 150 aa8.6□□□□□ -1.03
SKA3-205ENST00000465471 LINC01554Q52M75 96 aa8.58□□□□□ -1.04
SKA3-205ENST00000465471 SYNE2Q8WXH0 6885 aaKnown RBP8.55□□□□□ -1.04
SKA3-205ENST00000465471 MT1XP80297 61 aa8.55□□□□□ -1.04
SKA3-205ENST00000465471 ATP5EP56381 51 aaPredicted RBP8.52□□□□□ -1.05
SKA3-205ENST00000465471 KRTAP13-4Q3LI77 160 aa8.51□□□□□ -1.05
SKA3-205ENST00000465471 PRO2289Q9P1D8 64 aa8.5□□□□□ -1.05
SKA3-205ENST00000465471 SEC61GP60059 68 aa8.46□□□□□ -1.06
SKA3-205ENST00000465471 KRTAP4-8Q9BYQ9 185 aa8.45□□□□□ -1.06
SKA3-205ENST00000465471 SERP1Q9Y6X1 66 aa8.45□□□□□ -1.06
SKA3-205ENST00000465471 KRTAP6-3Q3LI67 103 aa8.43□□□□□ -1.06
SKA3-205ENST00000465471 TMEM258P61165 79 aa8.41□□□□□ -1.06
SKA3-205ENST00000465471 H3BS24 57 aa8.4□□□□□ -1.06
SKA3-205ENST00000465471 A0A1B0GU33 70 aa8.33□□□□□ -1.08
SKA3-205ENST00000465471 A0A1B0GU69 56 aa8.31□□□□□ -1.08
SKA3-205ENST00000465471 KRTAP12-2P59991 146 aa8.29□□□□□ -1.08
SKA3-205ENST00000465471 SPATA8Q6RVD6 105 aa8.28□□□□□ -1.08
SKA3-205ENST00000465471 KRTAP5-9P26371 169 aa8.22□□□□□ -1.09
SKA3-205ENST00000465471 KMT2DO14686 5537 aa8.21□□□□□ -1.09
SKA3-205ENST00000465471 A0A0D9SG42 100 aa8.2□□□□□ -1.1
SKA3-205ENST00000465471 LINC01558Q9Y6Z2 57 aa8.2□□□□□ -1.1
SKA3-205ENST00000465471 KRTAP4-12Q9BQ66 201 aa8.19□□□□□ -1.1
SKA3-205ENST00000465471 KRTAP10-7P60409 375 aaPredicted RBP8.15□□□□□ -1.1
SKA3-205ENST00000465471 PRR15LQ9BU68 103 aa8.14□□□□□ -1.11
SKA3-205ENST00000465471 KRTAP10-12P60413 245 aa8.13□□□□□ -1.11
SKA3-205ENST00000465471 CAMK2N1Q7Z7J9 78 aa8.13□□□□□ -1.11
SKA3-205ENST00000465471 MUC12Q9UKN1 5478 aa8.13□□□□□ -1.11
SKA3-205ENST00000465471 KRTAP12-1P59990 96 aa8.12□□□□□ -1.11
SKA3-205ENST00000465471 LCE3BQ5TA77 95 aa8.1□□□□□ -1.11
SKA3-205ENST00000465471 SMIM26A0A096LP01 95 aa8.09□□□□□ -1.11
SKA3-205ENST00000465471 SPINT4Q6UDR6 99 aa8.06□□□□□ -1.12
SKA3-205ENST00000465471 KRTAP4-8A0A0G2JLE6 195 aa8.05□□□□□ -1.12
SKA3-205ENST00000465471 KRTAP8-1Q8IUC2 63 aa8.05□□□□□ -1.12
SKA3-205ENST00000465471 NEBP20929 6669 aa8.04□□□□□ -1.12
SKA3-205ENST00000465471 A8MU10 97 aa8.04□□□□□ -1.12
SKA3-205ENST00000465471 SPRR2FQ96RM1 72 aa7.98□□□□□ -1.13
SKA3-205ENST00000465471 MDN1Q9NU22 5596 aa7.97□□□□□ -1.13
SKA3-205ENST00000465471 PCP4P48539 62 aa7.92□□□□□ -1.14
SKA3-205ENST00000465471 UQCR11O14957 56 aa7.9□□□□□ -1.14
SKA3-205ENST00000465471 KRTAP9-9Q9BYP9 154 aa7.88□□□□□ -1.15
SKA3-205ENST00000465471 KRTAP9-4Q9BYQ2 154 aa7.88□□□□□ -1.15
SKA3-205ENST00000465471 Q1T7F1 81 aa7.87□□□□□ -1.15
SKA3-205ENST00000465471 V9GYY9 64 aa7.87□□□□□ -1.15
SKA3-205ENST00000465471 KRTAP19-4Q3LI73 84 aa7.79□□□□□ -1.16
SKA3-205ENST00000465471 SPRR2EP22531 72 aa7.78□□□□□ -1.16
SKA3-205ENST00000465471 SPRR2BP35325 72 aa7.78□□□□□ -1.16
SKA3-205ENST00000465471 SPRR2AP35326 72 aa7.78□□□□□ -1.16
SKA3-205ENST00000465471 LCE1AQ5T7P2 110 aa7.77□□□□□ -1.17
SKA3-205ENST00000465471 PSPHP1O15172 72 aa7.76□□□□□ -1.17
SKA3-205ENST00000465471 RPS28P62857 69 aaKnown RBP7.74□□□□□ -1.17
SKA3-205ENST00000465471 MIR22HGQ0VDD5 57 aa7.74□□□□□ -1.17
SKA3-205ENST00000465471 C10orf95Q9H7T3 257 aa7.73□□□□□ -1.17
SKA3-205ENST00000465471 KRTAP19-7Q3SYF9 63 aa7.65□□□□□ -1.18
SKA3-205ENST00000465471 KRTAP20-1Q3LI63 56 aa7.62□□□□□ -1.19
SKA3-205ENST00000465471 TNP1P09430 55 aa7.6□□□□□ -1.19
SKA3-205ENST00000465471 LCE4AQ5TA78 99 aa7.6□□□□□ -1.19
SKA3-205ENST00000465471 LCE1DQ5T752 114 aa7.57□□□□□ -1.2
SKA3-205ENST00000465471 MT1EP04732 61 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 201.6 ms