RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CRCT1Q9UGL9 99 aa10.73□□□□□ -0.69
CCDC28B-203ENST00000461819 A8MUN3 132 aa10.72□□□□□ -0.69
CCDC28B-203ENST00000461819 KRTAP3-3Q9BYR6 98 aa10.66□□□□□ -0.7
CCDC28B-203ENST00000461819 USH2AO75445 5202 aa10.65□□□□□ -0.71
CCDC28B-203ENST00000461819 LCE2BO14633 110 aa10.61□□□□□ -0.71
CCDC28B-203ENST00000461819 NDUFC1O43677 76 aa10.61□□□□□ -0.71
CCDC28B-203ENST00000461819 DMAC1Q96GE9 116 aa10.54□□□□□ -0.72
CCDC28B-203ENST00000461819 SERP2Q8N6R1 65 aa10.51□□□□□ -0.73
CCDC28B-203ENST00000461819 SNURFQ9Y675 71 aa10.49□□□□□ -0.73
CCDC28B-203ENST00000461819 SSPOA2VEC9 5147 aa10.45□□□□□ -0.74
CCDC28B-203ENST00000461819 C20orf197Q8N268 126 aa10.45□□□□□ -0.74
CCDC28B-203ENST00000461819 H0YAA0 97 aa10.37□□□□□ -0.75
CCDC28B-203ENST00000461819 ACYP2P14621 99 aa10.37□□□□□ -0.75
CCDC28B-203ENST00000461819 KRTAP19-1Q8IUB9 90 aa10.35□□□□□ -0.75
CCDC28B-203ENST00000461819 ADM2Q7Z4H4 148 aa10.31□□□□□ -0.76
CCDC28B-203ENST00000461819 SPRR2GQ9BYE4 73 aa10.29□□□□□ -0.76
CCDC28B-203ENST00000461819 CRIPTQ9P021 101 aa10.29□□□□□ -0.76
CCDC28B-203ENST00000461819 COX7CP15954 63 aa10.28□□□□□ -0.76
CCDC28B-203ENST00000461819 SPANXA2-OT1Q8N9U9 137 aa10.28□□□□□ -0.76
CCDC28B-203ENST00000461819 CHKB-CPT1BH3BT56 60 aa10.23□□□□□ -0.77
CCDC28B-203ENST00000461819 SPTSSBQ8NFR3 76 aa10.21□□□□□ -0.77
CCDC28B-203ENST00000461819 Q5VV11 94 aa10.19□□□□□ -0.78
CCDC28B-203ENST00000461819 KRTAP19-6Q3LI70 58 aa10.18□□□□□ -0.78
CCDC28B-203ENST00000461819 FCGBPQ9Y6R7 5405 aaPredicted RBP10.18□□□□□ -0.78
CCDC28B-203ENST00000461819 KRTAP19-8Q3LI54 63 aa10.15□□□□□ -0.78
CCDC28B-203ENST00000461819 ANAPC13Q9BS18 74 aa10.15□□□□□ -0.78
CCDC28B-203ENST00000461819 MT1BP07438 61 aa10.11□□□□□ -0.79
CCDC28B-203ENST00000461819 P0C880 135 aa10.1□□□□□ -0.79
CCDC28B-203ENST00000461819 CYSTM1Q9H1C7 97 aa10.05□□□□□ -0.8
CCDC28B-203ENST00000461819 R4GN34 69 aa10.04□□□□□ -0.8
CCDC28B-203ENST00000461819 H7BZZ5 65 aa10.03□□□□□ -0.8
CCDC28B-203ENST00000461819 KRTAP3-2Q9BYR7 98 aa10.03□□□□□ -0.8
CCDC28B-203ENST00000461819 COA5Q86WW8 74 aa9.99□□□□□ -0.81
CCDC28B-203ENST00000461819 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.97□□□□□ -0.81
CCDC28B-203ENST00000461819 M0QZ58 72 aa9.97□□□□□ -0.81
CCDC28B-203ENST00000461819 A6NN06 94 aa9.91□□□□□ -0.82
CCDC28B-203ENST00000461819 CCDC179H3BU77 68 aa9.9□□□□□ -0.82
CCDC28B-203ENST00000461819 MACF1Q9UPN3 7388 aaKnown RBP9.85□□□□□ -0.83
CCDC28B-203ENST00000461819 LINC01554Q52M75 96 aa9.83□□□□□ -0.84
CCDC28B-203ENST00000461819 KRTAP10-5P60370 271 aa9.81□□□□□ -0.84
CCDC28B-203ENST00000461819 PLAC4Q8WY50 150 aa9.8□□□□□ -0.84
CCDC28B-203ENST00000461819 KRTAP9-7A8MTY7 169 aa9.75□□□□□ -0.85
CCDC28B-203ENST00000461819 SEC61GP60059 68 aa9.72□□□□□ -0.85
CCDC28B-203ENST00000461819 ATP5EP56381 51 aaPredicted RBP9.7□□□□□ -0.86
CCDC28B-203ENST00000461819 SERP1Q9Y6X1 66 aa9.68□□□□□ -0.86
CCDC28B-203ENST00000461819 SYNE2Q8WXH0 6885 aaKnown RBP9.66□□□□□ -0.86
CCDC28B-203ENST00000461819 PRO2289Q9P1D8 64 aa9.65□□□□□ -0.86
CCDC28B-203ENST00000461819 MT1XP80297 61 aa9.58□□□□□ -0.88
CCDC28B-203ENST00000461819 TMEM258P61165 79 aa9.57□□□□□ -0.88
CCDC28B-203ENST00000461819 KRTAP13-4Q3LI77 160 aa9.57□□□□□ -0.88
CCDC28B-203ENST00000461819 A0A1B0GU69 56 aa9.5□□□□□ -0.89
CCDC28B-203ENST00000461819 A0A1B0GU33 70 aa9.48□□□□□ -0.89
CCDC28B-203ENST00000461819 KRTAP6-3Q3LI67 103 aa9.43□□□□□ -0.9
CCDC28B-203ENST00000461819 SPATA8Q6RVD6 105 aa9.41□□□□□ -0.9
CCDC28B-203ENST00000461819 A0A0D9SG42 100 aa9.38□□□□□ -0.91
CCDC28B-203ENST00000461819 PRR15LQ9BU68 103 aa9.34□□□□□ -0.91
CCDC28B-203ENST00000461819 CAMK2N1Q7Z7J9 78 aa9.3□□□□□ -0.92
CCDC28B-203ENST00000461819 LINC01558Q9Y6Z2 57 aa9.28□□□□□ -0.92
CCDC28B-203ENST00000461819 KRTAP12-2P59991 146 aa9.27□□□□□ -0.93
CCDC28B-203ENST00000461819 KMT2DO14686 5537 aa9.24□□□□□ -0.93
CCDC28B-203ENST00000461819 SPINT4Q6UDR6 99 aa9.23□□□□□ -0.93
CCDC28B-203ENST00000461819 SMIM26A0A096LP01 95 aa9.22□□□□□ -0.93
CCDC28B-203ENST00000461819 KRTAP12-1P59990 96 aa9.15□□□□□ -0.94
CCDC28B-203ENST00000461819 KRTAP10-7P60409 375 aaPredicted RBP9.15□□□□□ -0.94
CCDC28B-203ENST00000461819 KRTAP5-9P26371 169 aa9.14□□□□□ -0.95
CCDC28B-203ENST00000461819 A8MU10 97 aa9.13□□□□□ -0.95
CCDC28B-203ENST00000461819 MUC12Q9UKN1 5478 aa9.12□□□□□ -0.95
CCDC28B-203ENST00000461819 KRTAP8-1Q8IUC2 63 aa9.11□□□□□ -0.95
CCDC28B-203ENST00000461819 KRTAP10-12P60413 245 aa9.09□□□□□ -0.95
CCDC28B-203ENST00000461819 PCP4P48539 62 aa9.05□□□□□ -0.96
CCDC28B-203ENST00000461819 KRTAP4-8A0A0G2JLE6 195 aa9.04□□□□□ -0.96
CCDC28B-203ENST00000461819 KRTAP4-8Q9BYQ9 185 aa9.04□□□□□ -0.96
CCDC28B-203ENST00000461819 NEBP20929 6669 aa9.03□□□□□ -0.96
CCDC28B-203ENST00000461819 SPRR2FQ96RM1 72 aa9.02□□□□□ -0.97
CCDC28B-203ENST00000461819 UQCR11O14957 56 aa9.01□□□□□ -0.97
CCDC28B-203ENST00000461819 V9GYY9 64 aa8.99□□□□□ -0.97
CCDC28B-203ENST00000461819 MDN1Q9NU22 5596 aa8.94□□□□□ -0.98
CCDC28B-203ENST00000461819 Q1T7F1 81 aa8.91□□□□□ -0.98
CCDC28B-203ENST00000461819 PSPHP1O15172 72 aa8.89□□□□□ -0.99
CCDC28B-203ENST00000461819 MIR22HGQ0VDD5 57 aa8.84□□□□□ -0.99
CCDC28B-203ENST00000461819 SPRR2EP22531 72 aa8.8□□□□□ -1
CCDC28B-203ENST00000461819 SPRR2BP35325 72 aa8.8□□□□□ -1
CCDC28B-203ENST00000461819 SPRR2AP35326 72 aa8.8□□□□□ -1
CCDC28B-203ENST00000461819 RPS28P62857 69 aaKnown RBP8.76□□□□□ -1.01
CCDC28B-203ENST00000461819 C10orf95Q9H7T3 257 aa8.71□□□□□ -1.02
CCDC28B-203ENST00000461819 LCE1AQ5T7P2 110 aa8.69□□□□□ -1.02
CCDC28B-203ENST00000461819 TNP1P09430 55 aa8.65□□□□□ -1.02
CCDC28B-203ENST00000461819 K7ERS5 55 aa8.64□□□□□ -1.03
CCDC28B-203ENST00000461819 A6NED7 52 aa8.63□□□□□ -1.03
CCDC28B-203ENST00000461819 KRTAP20-1Q3LI63 56 aa8.59□□□□□ -1.03
CCDC28B-203ENST00000461819 KRTAP19-7Q3SYF9 63 aa8.54□□□□□ -1.04
CCDC28B-203ENST00000461819 SPRR2DP22532 72 aa8.51□□□□□ -1.05
CCDC28B-203ENST00000461819 MT1EP04732 61 aa8.47□□□□□ -1.05
CCDC28B-203ENST00000461819 KRTAP19-5Q3LI72 72 aa8.46□□□□□ -1.06
CCDC28B-203ENST00000461819 LCE3AQ5TA76 89 aa8.46□□□□□ -1.06
CCDC28B-203ENST00000461819 KRTAP2-3P0C7H8 128 aa8.45□□□□□ -1.06
CCDC28B-203ENST00000461819 KRTAP2-4Q9BYR9 128 aa8.45□□□□□ -1.06
CCDC28B-203ENST00000461819 KRTAP25-1Q3LHN0 102 aa8.34□□□□□ -1.07
CCDC28B-203ENST00000461819 KRTAP19-3Q7Z4W3 81 aa8.33□□□□□ -1.08
CCDC28B-203ENST00000461819 LCE5AQ5TCM9 118 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms