RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 RPL37P61927 97 aaKnown RBP5.85□□□□□ -1.47
SCN9A-205ENST00000454569 Q75L30 129 aa5.85□□□□□ -1.47
SCN9A-205ENST00000454569 MUC17Q685J3 4493 aa5.85□□□□□ -1.47
SCN9A-205ENST00000454569 Q5W150 140 aa5.84□□□□□ -1.47
SCN9A-205ENST00000454569 RBM12B-AS1Q9P1G2 102 aa5.84□□□□□ -1.47
SCN9A-205ENST00000454569 NDUFC1O43677 76 aa5.84□□□□□ -1.48
SCN9A-205ENST00000454569 KTN1-AS1Q86SY8 53 aa5.84□□□□□ -1.48
SCN9A-205ENST00000454569 H3BPC8 53 aa5.83□□□□□ -1.48
SCN9A-205ENST00000454569 LINC00208Q96KT6 92 aa5.83□□□□□ -1.48
SCN9A-205ENST00000454569 PCOTHQ58A44 107 aa5.81□□□□□ -1.48
SCN9A-205ENST00000454569 H7BZZ5 65 aa5.8□□□□□ -1.48
SCN9A-205ENST00000454569 C1orf64Q8NEQ6 169 aa5.8□□□□□ -1.48
SCN9A-205ENST00000454569 RNF213Q63HN8 5207 aa5.8□□□□□ -1.48
SCN9A-205ENST00000454569 ZCCHC13Q8WW36 166 aaKnown RBP5.8□□□□□ -1.48
SCN9A-205ENST00000454569 KRTAP4-1Q9BYQ7 146 aa5.8□□□□□ -1.48
SCN9A-205ENST00000454569 SEC61BP60468 96 aaKnown RBP5.78□□□□□ -1.48
SCN9A-205ENST00000454569 MUC2Q02817 5179 aa5.77□□□□□ -1.49
SCN9A-205ENST00000454569 ATP11AUNQ6ZP68 121 aa5.76□□□□□ -1.49
SCN9A-205ENST00000454569 LOC101927531A0A1B0GV80 90 aa5.76□□□□□ -1.49
SCN9A-205ENST00000454569 IGKV2-30P06310 120 aa5.71□□□□□ -1.5
SCN9A-205ENST00000454569 Q1T7F1 81 aa5.7□□□□□ -1.5
SCN9A-205ENST00000454569 CYP4F30PQ9H0H9 118 aa5.7□□□□□ -1.5
SCN9A-205ENST00000454569 IGKV2D-30A0A075B6S6 120 aa5.69□□□□□ -1.5
SCN9A-205ENST00000454569 LCE1DQ5T752 114 aa5.69□□□□□ -1.5
SCN9A-205ENST00000454569 LCE5AQ5TCM9 118 aa5.69□□□□□ -1.5
SCN9A-205ENST00000454569 C7orf65Q6ZTY9 151 aa5.68□□□□□ -1.5
SCN9A-205ENST00000454569 KRTAP4-8A0A0G2JLE6 195 aa5.67□□□□□ -1.5
SCN9A-205ENST00000454569 SPINK7P58062 85 aa5.67□□□□□ -1.5
SCN9A-205ENST00000454569 LCA10Q71F78 164 aa5.66□□□□□ -1.5
SCN9A-205ENST00000454569 SPANXA2-OT1Q8N9U9 137 aa5.66□□□□□ -1.5
SCN9A-205ENST00000454569 HRES1P13985 223 aa5.63□□□□□ -1.51
SCN9A-205ENST00000454569 A8MUN3 132 aa5.61□□□□□ -1.51
SCN9A-205ENST00000454569 KRTAP19-2Q3LHN2 52 aa5.59□□□□□ -1.51
SCN9A-205ENST00000454569 FAT4Q6V0I7 4981 aa5.57□□□□□ -1.52
SCN9A-205ENST00000454569 A6NN06 94 aa5.56□□□□□ -1.52
SCN9A-205ENST00000454569 DMAC1Q96GE9 116 aa5.54□□□□□ -1.52
SCN9A-205ENST00000454569 ACYP2P14621 99 aa5.51□□□□□ -1.53
SCN9A-205ENST00000454569 COA5Q86WW8 74 aa5.5□□□□□ -1.53
SCN9A-205ENST00000454569 FLGP20930 4061 aaPredicted RBP5.5□□□□□ -1.53
SCN9A-205ENST00000454569 LINC01554Q52M75 96 aa5.49□□□□□ -1.53
SCN9A-205ENST00000454569 COX6B2Q6YFQ2 88 aa5.48□□□□□ -1.53
SCN9A-205ENST00000454569 KRTAP4-9Q9BYQ8 210 aa5.46□□□□□ -1.54
SCN9A-205ENST00000454569 CHKB-CPT1BH3BT56 60 aa5.45□□□□□ -1.54
SCN9A-205ENST00000454569 PSPHP1O15172 72 aa5.44□□□□□ -1.54
SCN9A-205ENST00000454569 Q5VV11 94 aa5.44□□□□□ -1.54
SCN9A-205ENST00000454569 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
SCN9A-205ENST00000454569 CDC42SE1Q9NRR8 79 aa5.42□□□□□ -1.54
SCN9A-205ENST00000454569 SPTSSBQ8NFR3 76 aa5.41□□□□□ -1.54
SCN9A-205ENST00000454569 H1FX-AS1Q4G0G2 97 aa5.4□□□□□ -1.55
SCN9A-205ENST00000454569 MT1HP80294 61 aa5.39□□□□□ -1.55
SCN9A-205ENST00000454569 KRTAP4-11Q9BYQ6 195 aa5.35□□□□□ -1.55
SCN9A-205ENST00000454569 A8MU10 97 aa5.33□□□□□ -1.56
SCN9A-205ENST00000454569 S4R3F8 94 aa5.32□□□□□ -1.56
SCN9A-205ENST00000454569 A6NED7 52 aa5.31□□□□□ -1.56
SCN9A-205ENST00000454569 PRR15LQ9BU68 103 aa5.28□□□□□ -1.56
SCN9A-205ENST00000454569 LINC01558Q9Y6Z2 57 aa5.26□□□□□ -1.57
SCN9A-205ENST00000454569 M0R2T5 61 aa5.25□□□□□ -1.57
SCN9A-205ENST00000454569 A0A1B0GU69 56 aa5.21□□□□□ -1.57
SCN9A-205ENST00000454569 KRTAP10-6P60371 365 aaPredicted RBP5.21□□□□□ -1.57
SCN9A-205ENST00000454569 CSAG1Q6PB30 78 aa5.2□□□□□ -1.58
SCN9A-205ENST00000454569 KRTAP4-2Q9BYR5 136 aa5.19□□□□□ -1.58
SCN9A-205ENST00000454569 PRAC1Q96KF2 57 aa5.18□□□□□ -1.58
SCN9A-205ENST00000454569 KRTAP9-8Q9BYQ0 159 aa5.18□□□□□ -1.58
SCN9A-205ENST00000454569 MT2AP02795 61 aa5.14□□□□□ -1.59
SCN9A-205ENST00000454569 MT1FP04733 61 aa5.12□□□□□ -1.59
SCN9A-205ENST00000454569 ROMO1P60602 79 aa5.08□□□□□ -1.6
SCN9A-205ENST00000454569 ADM2Q7Z4H4 148 aa5.08□□□□□ -1.6
SCN9A-205ENST00000454569 P0C880 135 aa5.08□□□□□ -1.6
SCN9A-205ENST00000454569 H0YAA0 97 aa5.06□□□□□ -1.6
SCN9A-205ENST00000454569 LCE1AQ5T7P2 110 aa5.05□□□□□ -1.6
SCN9A-205ENST00000454569 UQCR11O14957 56 aa5.04□□□□□ -1.6
SCN9A-205ENST00000454569 KRTAP10-10P60014 251 aa5.04□□□□□ -1.6
SCN9A-205ENST00000454569 A0A1B0GU33 70 aa5.04□□□□□ -1.6
SCN9A-205ENST00000454569 MIR22HGQ0VDD5 57 aa4.99□□□□□ -1.61
SCN9A-205ENST00000454569 SPATA8Q6RVD6 105 aa4.95□□□□□ -1.62
SCN9A-205ENST00000454569 KRTAP13-4Q3LI77 160 aa4.94□□□□□ -1.62
SCN9A-205ENST00000454569 M0QZ58 72 aa4.91□□□□□ -1.62
SCN9A-205ENST00000454569 R4GN34 69 aa4.91□□□□□ -1.62
SCN9A-205ENST00000454569 SPRR2GQ9BYE4 73 aa4.9□□□□□ -1.63
SCN9A-205ENST00000454569 USH2AO75445 5202 aa4.9□□□□□ -1.63
SCN9A-205ENST00000454569 KRTAP25-1Q3LHN0 102 aa4.89□□□□□ -1.63
SCN9A-205ENST00000454569 CRIPTQ9P021 101 aa4.87□□□□□ -1.63
SCN9A-205ENST00000454569 A0A0D9SG42 100 aa4.85□□□□□ -1.63
SCN9A-205ENST00000454569 K7ERS5 55 aa4.82□□□□□ -1.64
SCN9A-205ENST00000454569 KRTAP19-8Q3LI54 63 aa4.82□□□□□ -1.64
SCN9A-205ENST00000454569 KRTAP5-3Q6L8H2 238 aa4.82□□□□□ -1.64
SCN9A-205ENST00000454569 MT1BP07438 61 aa4.81□□□□□ -1.64
SCN9A-205ENST00000454569 FSIP2Q5CZC0 6907 aa4.81□□□□□ -1.64
SCN9A-205ENST00000454569 SSPOA2VEC9 5147 aa4.8□□□□□ -1.64
SCN9A-205ENST00000454569 LUZP6Q538Z0 58 aa4.79□□□□□ -1.64
SCN9A-205ENST00000454569 SPINT4Q6UDR6 99 aa4.74□□□□□ -1.65
SCN9A-205ENST00000454569 KRTAP12-1P59990 96 aa4.74□□□□□ -1.65
SCN9A-205ENST00000454569 KRTAP12-2P59991 146 aa4.73□□□□□ -1.65
SCN9A-205ENST00000454569 NDUFAF8A1L188 74 aa4.72□□□□□ -1.65
SCN9A-205ENST00000454569 MT3P25713 68 aa4.68□□□□□ -1.66
SCN9A-205ENST00000454569 PLAC4Q8WY50 150 aa4.64□□□□□ -1.67
SCN9A-205ENST00000454569 MT1XP80297 61 aa4.6□□□□□ -1.67
SCN9A-205ENST00000454569 KRTAP19-6Q3LI70 58 aa4.6□□□□□ -1.67
SCN9A-205ENST00000454569 CAMK2N1Q7Z7J9 78 aa4.6□□□□□ -1.67
SCN9A-205ENST00000454569 KRTAP10-5P60370 271 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 255 ms