RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 KRTAP3-3Q9BYR6 98 aa13.12□□□□□ -0.31
SMARCC1-203ENST00000454240 A8MUN3 132 aa13.11□□□□□ -0.31
SMARCC1-203ENST00000454240 CRCT1Q9UGL9 99 aa13.09□□□□□ -0.31
SMARCC1-203ENST00000454240 LCE2BO14633 110 aa13.02□□□□□ -0.33
SMARCC1-203ENST00000454240 USH2AO75445 5202 aa12.97□□□□□ -0.33
SMARCC1-203ENST00000454240 NDUFC1O43677 76 aa12.93□□□□□ -0.34
SMARCC1-203ENST00000454240 DMAC1Q96GE9 116 aa12.91□□□□□ -0.34
SMARCC1-203ENST00000454240 SERP2Q8N6R1 65 aa12.87□□□□□ -0.35
SMARCC1-203ENST00000454240 SNURFQ9Y675 71 aa12.82□□□□□ -0.36
SMARCC1-203ENST00000454240 C20orf197Q8N268 126 aa12.76□□□□□ -0.37
SMARCC1-203ENST00000454240 SSPOA2VEC9 5147 aa12.74□□□□□ -0.37
SMARCC1-203ENST00000454240 H0YAA0 97 aa12.73□□□□□ -0.37
SMARCC1-203ENST00000454240 KRTAP19-1Q8IUB9 90 aa12.72□□□□□ -0.37
SMARCC1-203ENST00000454240 ACYP2P14621 99 aa12.68□□□□□ -0.38
SMARCC1-203ENST00000454240 SPRR2GQ9BYE4 73 aa12.63□□□□□ -0.39
SMARCC1-203ENST00000454240 COX7CP15954 63 aa12.61□□□□□ -0.39
SMARCC1-203ENST00000454240 SPANXA2-OT1Q8N9U9 137 aa12.61□□□□□ -0.39
SMARCC1-203ENST00000454240 CRIPTQ9P021 101 aa12.58□□□□□ -0.4
SMARCC1-203ENST00000454240 ADM2Q7Z4H4 148 aa12.57□□□□□ -0.4
SMARCC1-203ENST00000454240 KRTAP19-6Q3LI70 58 aa12.49□□□□□ -0.41
SMARCC1-203ENST00000454240 KRTAP19-8Q3LI54 63 aa12.48□□□□□ -0.41
SMARCC1-203ENST00000454240 FCGBPQ9Y6R7 5405 aaPredicted RBP12.41□□□□□ -0.42
SMARCC1-203ENST00000454240 CHKB-CPT1BH3BT56 60 aa12.41□□□□□ -0.42
SMARCC1-203ENST00000454240 MT1BP07438 61 aa12.41□□□□□ -0.42
SMARCC1-203ENST00000454240 SPTSSBQ8NFR3 76 aa12.41□□□□□ -0.42
SMARCC1-203ENST00000454240 Q5VV11 94 aa12.4□□□□□ -0.42
SMARCC1-203ENST00000454240 ANAPC13Q9BS18 74 aa12.38□□□□□ -0.43
SMARCC1-203ENST00000454240 P0C880 135 aa12.37□□□□□ -0.43
SMARCC1-203ENST00000454240 KRTAP3-2Q9BYR7 98 aa12.36□□□□□ -0.43
SMARCC1-203ENST00000454240 CYSTM1Q9H1C7 97 aa12.35□□□□□ -0.43
SMARCC1-203ENST00000454240 H7BZZ5 65 aa12.33□□□□□ -0.44
SMARCC1-203ENST00000454240 R4GN34 69 aa12.21□□□□□ -0.45
SMARCC1-203ENST00000454240 COA5Q86WW8 74 aa12.2□□□□□ -0.46
SMARCC1-203ENST00000454240 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.17□□□□□ -0.46
SMARCC1-203ENST00000454240 CCDC179H3BU77 68 aa12.14□□□□□ -0.47
SMARCC1-203ENST00000454240 M0QZ58 72 aa12.12□□□□□ -0.47
SMARCC1-203ENST00000454240 A6NN06 94 aa12.05□□□□□ -0.48
SMARCC1-203ENST00000454240 KRTAP10-5P60370 271 aa12.02□□□□□ -0.49
SMARCC1-203ENST00000454240 MACF1Q9UPN3 7388 aaKnown RBP11.98□□□□□ -0.49
SMARCC1-203ENST00000454240 PLAC4Q8WY50 150 aa11.92□□□□□ -0.5
SMARCC1-203ENST00000454240 LINC01554Q52M75 96 aa11.91□□□□□ -0.5
SMARCC1-203ENST00000454240 KRTAP9-7A8MTY7 169 aa11.87□□□□□ -0.51
SMARCC1-203ENST00000454240 ATP5EP56381 51 aaPredicted RBP11.84□□□□□ -0.51
SMARCC1-203ENST00000454240 SEC61GP60059 68 aa11.8□□□□□ -0.52
SMARCC1-203ENST00000454240 SERP1Q9Y6X1 66 aa11.77□□□□□ -0.53
SMARCC1-203ENST00000454240 SYNE2Q8WXH0 6885 aaKnown RBP11.77□□□□□ -0.53
SMARCC1-203ENST00000454240 MT1XP80297 61 aa11.75□□□□□ -0.53
SMARCC1-203ENST00000454240 KRTAP13-4Q3LI77 160 aa11.75□□□□□ -0.53
SMARCC1-203ENST00000454240 PRO2289Q9P1D8 64 aa11.73□□□□□ -0.53
SMARCC1-203ENST00000454240 TMEM258P61165 79 aa11.7□□□□□ -0.54
SMARCC1-203ENST00000454240 A0A1B0GU33 70 aa11.58□□□□□ -0.56
SMARCC1-203ENST00000454240 A0A1B0GU69 56 aa11.56□□□□□ -0.56
SMARCC1-203ENST00000454240 KRTAP6-3Q3LI67 103 aa11.54□□□□□ -0.56
SMARCC1-203ENST00000454240 SPATA8Q6RVD6 105 aa11.49□□□□□ -0.57
SMARCC1-203ENST00000454240 A0A0D9SG42 100 aa11.39□□□□□ -0.59
SMARCC1-203ENST00000454240 LINC01558Q9Y6Z2 57 aa11.39□□□□□ -0.59
SMARCC1-203ENST00000454240 KRTAP12-2P59991 146 aa11.38□□□□□ -0.59
SMARCC1-203ENST00000454240 PRR15LQ9BU68 103 aa11.34□□□□□ -0.59
SMARCC1-203ENST00000454240 KMT2DO14686 5537 aa11.28□□□□□ -0.6
SMARCC1-203ENST00000454240 CAMK2N1Q7Z7J9 78 aa11.28□□□□□ -0.6
SMARCC1-203ENST00000454240 SMIM26A0A096LP01 95 aa11.24□□□□□ -0.61
SMARCC1-203ENST00000454240 KRTAP5-9P26371 169 aa11.23□□□□□ -0.61
SMARCC1-203ENST00000454240 KRTAP12-1P59990 96 aa11.22□□□□□ -0.61
SMARCC1-203ENST00000454240 KRTAP10-7P60409 375 aaPredicted RBP11.22□□□□□ -0.61
SMARCC1-203ENST00000454240 SPINT4Q6UDR6 99 aa11.21□□□□□ -0.61
SMARCC1-203ENST00000454240 KRTAP10-12P60413 245 aa11.17□□□□□ -0.62
SMARCC1-203ENST00000454240 A8MU10 97 aa11.16□□□□□ -0.62
SMARCC1-203ENST00000454240 PCP4P48539 62 aa11.11□□□□□ -0.63
SMARCC1-203ENST00000454240 MUC12Q9UKN1 5478 aa11.1□□□□□ -0.63
SMARCC1-203ENST00000454240 KRTAP4-8A0A0G2JLE6 195 aa11.09□□□□□ -0.63
SMARCC1-203ENST00000454240 KRTAP4-8Q9BYQ9 185 aa11.09□□□□□ -0.63
SMARCC1-203ENST00000454240 KRTAP8-1Q8IUC2 63 aa11.08□□□□□ -0.64
SMARCC1-203ENST00000454240 UQCR11O14957 56 aa11□□□□□ -0.65
SMARCC1-203ENST00000454240 NEBP20929 6669 aa10.99□□□□□ -0.65
SMARCC1-203ENST00000454240 V9GYY9 64 aa10.98□□□□□ -0.65
SMARCC1-203ENST00000454240 Q1T7F1 81 aa10.96□□□□□ -0.65
SMARCC1-203ENST00000454240 SPRR2FQ96RM1 72 aa10.96□□□□□ -0.65
SMARCC1-203ENST00000454240 MDN1Q9NU22 5596 aa10.86□□□□□ -0.67
SMARCC1-203ENST00000454240 PSPHP1O15172 72 aa10.84□□□□□ -0.67
SMARCC1-203ENST00000454240 RPS28P62857 69 aaKnown RBP10.82□□□□□ -0.68
SMARCC1-203ENST00000454240 MIR22HGQ0VDD5 57 aa10.79□□□□□ -0.68
SMARCC1-203ENST00000454240 C10orf95Q9H7T3 257 aa10.7□□□□□ -0.7
SMARCC1-203ENST00000454240 SPRR2EP22531 72 aa10.69□□□□□ -0.7
SMARCC1-203ENST00000454240 SPRR2BP35325 72 aa10.69□□□□□ -0.7
SMARCC1-203ENST00000454240 SPRR2AP35326 72 aa10.69□□□□□ -0.7
SMARCC1-203ENST00000454240 LCE1AQ5T7P2 110 aa10.65□□□□□ -0.7
SMARCC1-203ENST00000454240 TNP1P09430 55 aa10.54□□□□□ -0.72
SMARCC1-203ENST00000454240 KRTAP19-7Q3SYF9 63 aa10.5□□□□□ -0.73
SMARCC1-203ENST00000454240 A6NED7 52 aa10.49□□□□□ -0.73
SMARCC1-203ENST00000454240 K7ERS5 55 aa10.47□□□□□ -0.73
SMARCC1-203ENST00000454240 KRTAP20-1Q3LI63 56 aa10.43□□□□□ -0.74
SMARCC1-203ENST00000454240 MT1EP04732 61 aa10.38□□□□□ -0.75
SMARCC1-203ENST00000454240 KRTAP19-5Q3LI72 72 aa10.34□□□□□ -0.75
SMARCC1-203ENST00000454240 LCE3AQ5TA76 89 aa10.34□□□□□ -0.75
SMARCC1-203ENST00000454240 KRTAP2-3P0C7H8 128 aa10.32□□□□□ -0.76
SMARCC1-203ENST00000454240 SPRR2DP22532 72 aa10.32□□□□□ -0.76
SMARCC1-203ENST00000454240 KRTAP2-4Q9BYR9 128 aa10.32□□□□□ -0.76
SMARCC1-203ENST00000454240 KRTAP25-1Q3LHN0 102 aa10.19□□□□□ -0.78
SMARCC1-203ENST00000454240 KRTAP19-3Q7Z4W3 81 aa10.19□□□□□ -0.78
SMARCC1-203ENST00000454240 LCE5AQ5TCM9 118 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms