RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 MIR22HGQ0VDD5 57 aa8.74□□□□□ -1.01
SNX17-204ENST00000453453 KRTAP16-1A8MUX0 517 aa8.72□□□□□ -1.01
SNX17-204ENST00000453453 IGKV2D-30A0A075B6S6 120 aa8.69□□□□□ -1.02
SNX17-204ENST00000453453 C9orf92A6NGG3 77 aa8.69□□□□□ -1.02
SNX17-204ENST00000453453 LINC01554Q52M75 96 aa8.63□□□□□ -1.03
SNX17-204ENST00000453453 PRAC1Q96KF2 57 aa8.62□□□□□ -1.03
SNX17-204ENST00000453453 TPRXLQ17RH7 258 aa8.61□□□□□ -1.03
SNX17-204ENST00000453453 ADM2Q7Z4H4 148 aa8.55□□□□□ -1.04
SNX17-204ENST00000453453 C20orf166-AS1Q96NR2 134 aa8.54□□□□□ -1.04
SNX17-204ENST00000453453 A8MUU9 505 aa8.54□□□□□ -1.04
SNX17-204ENST00000453453 XP32Q5T750 250 aa8.53□□□□□ -1.04
SNX17-204ENST00000453453 RPL37P61927 97 aaKnown RBP8.47□□□□□ -1.05
SNX17-204ENST00000453453 HERC1Q15751 4861 aa8.46□□□□□ -1.06
SNX17-204ENST00000453453 CSAG1Q6PB30 78 aa8.42□□□□□ -1.06
SNX17-204ENST00000453453 SEC61BP60468 96 aaKnown RBP8.36□□□□□ -1.07
SNX17-204ENST00000453453 LPAP08519 4548 aa8.36□□□□□ -1.07
SNX17-204ENST00000453453 H0YAA0 97 aa8.32□□□□□ -1.08
SNX17-204ENST00000453453 HMCN2Q8NDA2 5059 aa8.3□□□□□ -1.08
SNX17-204ENST00000453453 A0A1B0GU33 70 aa8.29□□□□□ -1.08
SNX17-204ENST00000453453 H1FX-AS1Q4G0G2 97 aa8.29□□□□□ -1.08
SNX17-204ENST00000453453 LRP2P98164 4655 aa8.27□□□□□ -1.09
SNX17-204ENST00000453453 KRTAP25-1Q3LHN0 102 aa8.27□□□□□ -1.09
SNX17-204ENST00000453453 K7ERS5 55 aa8.21□□□□□ -1.1
SNX17-204ENST00000453453 MUC17Q685J3 4493 aa8.18□□□□□ -1.1
SNX17-204ENST00000453453 KRTAP3-1Q9BYR8 98 aa8.18□□□□□ -1.1
SNX17-204ENST00000453453 H3BS24 57 aa8.12□□□□□ -1.11
SNX17-204ENST00000453453 COX6B2Q6YFQ2 88 aa8.12□□□□□ -1.11
SNX17-204ENST00000453453 ROMO1P60602 79 aa8.07□□□□□ -1.12
SNX17-204ENST00000453453 KRTAP4-1Q9BYQ7 146 aa8.06□□□□□ -1.12
SNX17-204ENST00000453453 UBR4Q5T4S7 5183 aa7.98□□□□□ -1.13
SNX17-204ENST00000453453 KRTAP10-6P60371 365 aaPredicted RBP7.89□□□□□ -1.15
SNX17-204ENST00000453453 RNF213Q63HN8 5207 aa7.84□□□□□ -1.15
SNX17-204ENST00000453453 KRTAP3-3Q9BYR6 98 aa7.84□□□□□ -1.15
SNX17-204ENST00000453453 KRTAP3-2Q9BYR7 98 aa7.81□□□□□ -1.16
SNX17-204ENST00000453453 MUC2Q02817 5179 aa7.8□□□□□ -1.16
SNX17-204ENST00000453453 S4R3F8 94 aa7.8□□□□□ -1.16
SNX17-204ENST00000453453 KRTAP19-2Q3LHN2 52 aa7.79□□□□□ -1.16
SNX17-204ENST00000453453 KRTAP13-4Q3LI77 160 aa7.76□□□□□ -1.17
SNX17-204ENST00000453453 P0C880 135 aa7.75□□□□□ -1.17
SNX17-204ENST00000453453 CRIPTQ9P021 101 aa7.74□□□□□ -1.17
SNX17-204ENST00000453453 LCE2CQ5TA81 110 aa7.7□□□□□ -1.18
SNX17-204ENST00000453453 A0A0D9SG42 100 aa7.67□□□□□ -1.18
SNX17-204ENST00000453453 SPINT4Q6UDR6 99 aa7.67□□□□□ -1.18
SNX17-204ENST00000453453 FLGP20930 4061 aaPredicted RBP7.63□□□□□ -1.19
SNX17-204ENST00000453453 M0R2T5 61 aa7.6□□□□□ -1.19
SNX17-204ENST00000453453 MT1HP80294 61 aa7.6□□□□□ -1.19
SNX17-204ENST00000453453 KRTAP15-1Q3LI76 137 aa7.6□□□□□ -1.19
SNX17-204ENST00000453453 M0QZ58 72 aa7.59□□□□□ -1.19
SNX17-204ENST00000453453 FAT4Q6V0I7 4981 aa7.58□□□□□ -1.2
SNX17-204ENST00000453453 KRTAP12-1P59990 96 aa7.56□□□□□ -1.2
SNX17-204ENST00000453453 KRTAP12-2P59991 146 aa7.56□□□□□ -1.2
SNX17-204ENST00000453453 C10orf95Q9H7T3 257 aa7.52□□□□□ -1.21
SNX17-204ENST00000453453 LCE2AQ5TA79 106 aaPredicted RBP7.44□□□□□ -1.22
SNX17-204ENST00000453453 NDUFAF8A1L188 74 aa7.39□□□□□ -1.23
SNX17-204ENST00000453453 LORP23490 312 aaPredicted RBP7.3□□□□□ -1.24
SNX17-204ENST00000453453 KRTAP9-8Q9BYQ0 159 aa7.27□□□□□ -1.25
SNX17-204ENST00000453453 MT2AP02795 61 aa7.26□□□□□ -1.25
SNX17-204ENST00000453453 KRTAP10-10P60014 251 aa7.24□□□□□ -1.25
SNX17-204ENST00000453453 KRTAP9-2Q9BYQ4 174 aa7.24□□□□□ -1.25
SNX17-204ENST00000453453 MT1FP04733 61 aa7.19□□□□□ -1.26
SNX17-204ENST00000453453 R4GN34 69 aa7.19□□□□□ -1.26
SNX17-204ENST00000453453 PP632Q6XCG6 107 aa7.13□□□□□ -1.27
SNX17-204ENST00000453453 PLAC4Q8WY50 150 aa7.11□□□□□ -1.27
SNX17-204ENST00000453453 LCE2DQ5TA82 110 aaPredicted RBP7.05□□□□□ -1.28
SNX17-204ENST00000453453 SPRR2GQ9BYE4 73 aa7.04□□□□□ -1.28
SNX17-204ENST00000453453 KRTAP9-3Q9BYQ3 159 aa7.02□□□□□ -1.29
SNX17-204ENST00000453453 KRTAP9-6A0A140TA67 174 aa7.01□□□□□ -1.29
SNX17-204ENST00000453453 KRTAP19-1Q8IUB9 90 aa7□□□□□ -1.29
SNX17-204ENST00000453453 KRTAP23-1A1A580 65 aa6.91□□□□□ -1.3
SNX17-204ENST00000453453 LUZP6Q538Z0 58 aa6.9□□□□□ -1.3
SNX17-204ENST00000453453 KRTAP19-8Q3LI54 63 aa6.88□□□□□ -1.31
SNX17-204ENST00000453453 CAMK2N1Q7Z7J9 78 aa6.85□□□□□ -1.31
SNX17-204ENST00000453453 LCE2BO14633 110 aa6.84□□□□□ -1.31
SNX17-204ENST00000453453 CRCT1Q9UGL9 99 aa6.84□□□□□ -1.31
SNX17-204ENST00000453453 A0A0A0MQY5 61 aa6.8□□□□□ -1.32
SNX17-204ENST00000453453 MT1BP07438 61 aa6.77□□□□□ -1.33
SNX17-204ENST00000453453 TNP1P09430 55 aa6.72□□□□□ -1.33
SNX17-204ENST00000453453 SPRR5A0A1B0GTR4 108 aa6.72□□□□□ -1.33
SNX17-204ENST00000453453 FSIP2Q5CZC0 6907 aa6.66□□□□□ -1.34
SNX17-204ENST00000453453 USH2AO75445 5202 aa6.63□□□□□ -1.35
SNX17-204ENST00000453453 PRO2289Q9P1D8 64 aa6.58□□□□□ -1.36
SNX17-204ENST00000453453 MT1XP80297 61 aa6.52□□□□□ -1.37
SNX17-204ENST00000453453 KRTAP10-5P60370 271 aa6.5□□□□□ -1.37
SNX17-204ENST00000453453 KRTAP19-6Q3LI70 58 aa6.5□□□□□ -1.37
SNX17-204ENST00000453453 SSPOA2VEC9 5147 aa6.44□□□□□ -1.38
SNX17-204ENST00000453453 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.38□□□□□ -1.39
SNX17-204ENST00000453453 KRTAP9-7A8MTY7 169 aa6.29□□□□□ -1.4
SNX17-204ENST00000453453 FCGBPQ9Y6R7 5405 aaPredicted RBP6.27□□□□□ -1.41
SNX17-204ENST00000453453 KRTAP10-7P60409 375 aaPredicted RBP6.24□□□□□ -1.41
SNX17-204ENST00000453453 LCE3AQ5TA76 89 aa6.22□□□□□ -1.41
SNX17-204ENST00000453453 INE1O15225 51 aa6.21□□□□□ -1.41
SNX17-204ENST00000453453 KRTAP8-1Q8IUC2 63 aa6.21□□□□□ -1.41
SNX17-204ENST00000453453 KRTAP10-12P60413 245 aa6.2□□□□□ -1.42
SNX17-204ENST00000453453 MACF1Q9UPN3 7388 aaKnown RBP6.03□□□□□ -1.44
SNX17-204ENST00000453453 KRTAP4-8A0A0G2JLE6 195 aa6.02□□□□□ -1.45
SNX17-204ENST00000453453 KRTAP4-8Q9BYQ9 185 aa6.02□□□□□ -1.45
SNX17-204ENST00000453453 KRTAP6-3Q3LI67 103 aa5.97□□□□□ -1.45
SNX17-204ENST00000453453 KRTAP12-3P60328 96 aa5.96□□□□□ -1.45
SNX17-204ENST00000453453 SYNE2Q8WXH0 6885 aaKnown RBP5.93□□□□□ -1.46
SNX17-204ENST00000453453 KMT2DO14686 5537 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms