RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 MPLKIPQ8TAP9 179 aa8.98□□□□□ -0.97
SQSTM1-204ENST00000453046 SPANXA2-OT1Q8N9U9 137 aa8.96□□□□□ -0.98
SQSTM1-204ENST00000453046 USH2AO75445 5202 aa8.92□□□□□ -0.98
SQSTM1-204ENST00000453046 C4orf26Q17RF5 130 aa8.91□□□□□ -0.98
SQSTM1-204ENST00000453046 TMEM258P61165 79 aa8.89□□□□□ -0.99
SQSTM1-204ENST00000453046 MT2AP02795 61 aa8.88□□□□□ -0.99
SQSTM1-204ENST00000453046 ATP5EP56381 51 aaPredicted RBP8.87□□□□□ -0.99
SQSTM1-204ENST00000453046 A8MUN3 132 aa8.86□□□□□ -0.99
SQSTM1-204ENST00000453046 DMAC1Q96GE9 116 aa8.85□□□□□ -0.99
SQSTM1-204ENST00000453046 SSPOA2VEC9 5147 aa8.84□□□□□ -0.99
SQSTM1-204ENST00000453046 KRTAP10-10P60014 251 aa8.82□□□□□ -1
SQSTM1-204ENST00000453046 MT1FP04733 61 aa8.81□□□□□ -1
SQSTM1-204ENST00000453046 KRTAP3-1Q9BYR8 98 aa8.78□□□□□ -1
SQSTM1-204ENST00000453046 ACYP2P14621 99 aa8.74□□□□□ -1.01
SQSTM1-204ENST00000453046 H1FX-AS1Q4G0G2 97 aa8.73□□□□□ -1.01
SQSTM1-204ENST00000453046 KRTAP9-3Q9BYQ3 159 aa8.73□□□□□ -1.01
SQSTM1-204ENST00000453046 LCE2BO14633 110 aa8.71□□□□□ -1.02
SQSTM1-204ENST00000453046 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.68□□□□□ -1.02
SQSTM1-204ENST00000453046 COA5Q86WW8 74 aa8.64□□□□□ -1.03
SQSTM1-204ENST00000453046 FCGBPQ9Y6R7 5405 aaPredicted RBP8.64□□□□□ -1.03
SQSTM1-204ENST00000453046 S4R3F8 94 aa8.63□□□□□ -1.03
SQSTM1-204ENST00000453046 KRTAP19-1Q8IUB9 90 aa8.62□□□□□ -1.03
SQSTM1-204ENST00000453046 KRTAP9-7A8MTY7 169 aa8.61□□□□□ -1.03
SQSTM1-204ENST00000453046 CHKB-CPT1BH3BT56 60 aa8.6□□□□□ -1.03
SQSTM1-204ENST00000453046 SERP1Q9Y6X1 66 aa8.6□□□□□ -1.03
SQSTM1-204ENST00000453046 LCA10Q71F78 164 aa8.56□□□□□ -1.04
SQSTM1-204ENST00000453046 SPTSSBQ8NFR3 76 aa8.51□□□□□ -1.05
SQSTM1-204ENST00000453046 KRTAP3-3Q9BYR6 98 aa8.5□□□□□ -1.05
SQSTM1-204ENST00000453046 RPS28P62857 69 aaKnown RBP8.46□□□□□ -1.06
SQSTM1-204ENST00000453046 CSAG1Q6PB30 78 aa8.45□□□□□ -1.06
SQSTM1-204ENST00000453046 KRTAP19-6Q3LI70 58 aa8.42□□□□□ -1.06
SQSTM1-204ENST00000453046 MACF1Q9UPN3 7388 aaKnown RBP8.4□□□□□ -1.06
SQSTM1-204ENST00000453046 SYNE2Q8WXH0 6885 aaKnown RBP8.34□□□□□ -1.07
SQSTM1-204ENST00000453046 SMIM26A0A096LP01 95 aa8.32□□□□□ -1.08
SQSTM1-204ENST00000453046 H0YAA0 97 aa8.29□□□□□ -1.08
SQSTM1-204ENST00000453046 V9GYY9 64 aa8.25□□□□□ -1.09
SQSTM1-204ENST00000453046 LINC01558Q9Y6Z2 57 aa8.24□□□□□ -1.09
SQSTM1-204ENST00000453046 Q1T7F1 81 aa8.21□□□□□ -1.1
SQSTM1-204ENST00000453046 SEC61GP60059 68 aa8.2□□□□□ -1.1
SQSTM1-204ENST00000453046 A0A1B0GU69 56 aa8.18□□□□□ -1.1
SQSTM1-204ENST00000453046 ADM2Q7Z4H4 148 aa8.18□□□□□ -1.1
SQSTM1-204ENST00000453046 PRR15LQ9BU68 103 aa8.16□□□□□ -1.1
SQSTM1-204ENST00000453046 KRTAP3-2Q9BYR7 98 aa8.15□□□□□ -1.1
SQSTM1-204ENST00000453046 Q5VV11 94 aa8.1□□□□□ -1.11
SQSTM1-204ENST00000453046 P0C880 135 aa8.09□□□□□ -1.11
SQSTM1-204ENST00000453046 KRTAP6-3Q3LI67 103 aa8.08□□□□□ -1.12
SQSTM1-204ENST00000453046 A6NN06 94 aa8.07□□□□□ -1.12
SQSTM1-204ENST00000453046 SPRR2GQ9BYE4 73 aa8.06□□□□□ -1.12
SQSTM1-204ENST00000453046 MT1BP07438 61 aa8.04□□□□□ -1.12
SQSTM1-204ENST00000453046 PSPHP1O15172 72 aa8.03□□□□□ -1.12
SQSTM1-204ENST00000453046 KRTAP19-8Q3LI54 63 aa8.02□□□□□ -1.13
SQSTM1-204ENST00000453046 CRIPTQ9P021 101 aa8.02□□□□□ -1.13
SQSTM1-204ENST00000453046 A0A1B0GU33 70 aa7.98□□□□□ -1.13
SQSTM1-204ENST00000453046 M0QZ58 72 aa7.94□□□□□ -1.14
SQSTM1-204ENST00000453046 R4GN34 69 aa7.93□□□□□ -1.14
SQSTM1-204ENST00000453046 UQCR11O14957 56 aa7.9□□□□□ -1.14
SQSTM1-204ENST00000453046 KRTAP10-5P60370 271 aa7.89□□□□□ -1.15
SQSTM1-204ENST00000453046 KRTAP13-4Q3LI77 160 aa7.86□□□□□ -1.15
SQSTM1-204ENST00000453046 MUC12Q9UKN1 5478 aa7.83□□□□□ -1.16
SQSTM1-204ENST00000453046 A6NED7 52 aa7.82□□□□□ -1.16
SQSTM1-204ENST00000453046 SPATA8Q6RVD6 105 aa7.81□□□□□ -1.16
SQSTM1-204ENST00000453046 NEBP20929 6669 aa7.81□□□□□ -1.16
SQSTM1-204ENST00000453046 MIR22HGQ0VDD5 57 aa7.78□□□□□ -1.16
SQSTM1-204ENST00000453046 LINC01554Q52M75 96 aa7.72□□□□□ -1.17
SQSTM1-204ENST00000453046 A0A0D9SG42 100 aa7.68□□□□□ -1.18
SQSTM1-204ENST00000453046 CDC42SE1Q9NRR8 79 aa7.68□□□□□ -1.18
SQSTM1-204ENST00000453046 A8MU10 97 aa7.67□□□□□ -1.18
SQSTM1-204ENST00000453046 KRTAP5-9P26371 169 aa7.65□□□□□ -1.18
SQSTM1-204ENST00000453046 KMT2DO14686 5537 aa7.64□□□□□ -1.19
SQSTM1-204ENST00000453046 PRO2289Q9P1D8 64 aa7.63□□□□□ -1.19
SQSTM1-204ENST00000453046 PLAC4Q8WY50 150 aa7.62□□□□□ -1.19
SQSTM1-204ENST00000453046 MDN1Q9NU22 5596 aa7.61□□□□□ -1.19
SQSTM1-204ENST00000453046 KRTAP12-1P59990 96 aa7.57□□□□□ -1.2
SQSTM1-204ENST00000453046 BRK1Q8WUW1 75 aa7.57□□□□□ -1.2
SQSTM1-204ENST00000453046 KRTAP20-1Q3LI63 56 aa7.56□□□□□ -1.2
SQSTM1-204ENST00000453046 SPINT4Q6UDR6 99 aa7.53□□□□□ -1.2
SQSTM1-204ENST00000453046 KRTAP12-2P59991 146 aa7.52□□□□□ -1.21
SQSTM1-204ENST00000453046 MT1XP80297 61 aa7.52□□□□□ -1.21
SQSTM1-204ENST00000453046 K7ERS5 55 aa7.51□□□□□ -1.21
SQSTM1-204ENST00000453046 SPRR2FQ96RM1 72 aa7.46□□□□□ -1.22
SQSTM1-204ENST00000453046 CAMK2N1Q7Z7J9 78 aa7.4□□□□□ -1.22
SQSTM1-204ENST00000453046 KRTAP8-1Q8IUC2 63 aa7.4□□□□□ -1.22
SQSTM1-204ENST00000453046 SPRR2EP22531 72 aa7.37□□□□□ -1.23
SQSTM1-204ENST00000453046 SPRR2BP35325 72 aa7.37□□□□□ -1.23
SQSTM1-204ENST00000453046 SPRR2AP35326 72 aa7.37□□□□□ -1.23
SQSTM1-204ENST00000453046 KRTAP2-3P0C7H8 128 aa7.33□□□□□ -1.24
SQSTM1-204ENST00000453046 KRTAP2-4Q9BYR9 128 aa7.33□□□□□ -1.24
SQSTM1-204ENST00000453046 PRO0628Q9UI54 55 aa7.32□□□□□ -1.24
SQSTM1-204ENST00000453046 KRTAP4-8A0A0G2JLE6 195 aa7.25□□□□□ -1.25
SQSTM1-204ENST00000453046 KRTAP4-8Q9BYQ9 185 aa7.25□□□□□ -1.25
SQSTM1-204ENST00000453046 LCE1AQ5T7P2 110 aa7.21□□□□□ -1.26
SQSTM1-204ENST00000453046 KRTAP10-7P60409 375 aaPredicted RBP7.2□□□□□ -1.26
SQSTM1-204ENST00000453046 C10orf95Q9H7T3 257 aa7.15□□□□□ -1.26
SQSTM1-204ENST00000453046 KRTAP10-12P60413 245 aa7.14□□□□□ -1.27
SQSTM1-204ENST00000453046 PMAIP1Q13794 54 aa7.14□□□□□ -1.27
SQSTM1-204ENST00000453046 SPRR2DP22532 72 aa7.13□□□□□ -1.27
SQSTM1-204ENST00000453046 ROMO1P60602 79 aa7.13□□□□□ -1.27
SQSTM1-204ENST00000453046 KRTAP2-2Q9BYT5 123 aa7.09□□□□□ -1.27
SQSTM1-204ENST00000453046 KRTAP2-1Q9BYU5 128 aa7.09□□□□□ -1.27
SQSTM1-204ENST00000453046 TNP1P09430 55 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms