RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 A8MUN3 132 aa6.7□□□□□ -1.34
COL3A1-203ENST00000450867 SMIM20Q8N5G0 67 aa6.69□□□□□ -1.34
COL3A1-203ENST00000450867 FAM236AA0A1B0GUQ0 79 aa6.68□□□□□ -1.34
COL3A1-203ENST00000450867 FAM236BA0A1B0GV22 79 aa6.68□□□□□ -1.34
COL3A1-203ENST00000450867 SSPOA2VEC9 5147 aa6.67□□□□□ -1.34
COL3A1-203ENST00000450867 TRAV7A0A075B6U4 112 aa6.66□□□□□ -1.34
COL3A1-203ENST00000450867 DMAC1Q96GE9 116 aa6.58□□□□□ -1.36
COL3A1-203ENST00000450867 NDUFC1O43677 76 aa6.57□□□□□ -1.36
COL3A1-203ENST00000450867 H0YAA0 97 aa6.55□□□□□ -1.36
COL3A1-203ENST00000450867 KRTAP19-1Q8IUB9 90 aa6.55□□□□□ -1.36
COL3A1-203ENST00000450867 SERP2Q8N6R1 65 aa6.51□□□□□ -1.37
COL3A1-203ENST00000450867 SPRR2GQ9BYE4 73 aa6.51□□□□□ -1.37
COL3A1-203ENST00000450867 FCGBPQ9Y6R7 5405 aaPredicted RBP6.5□□□□□ -1.37
COL3A1-203ENST00000450867 KRTAP19-6Q3LI70 58 aa6.48□□□□□ -1.37
COL3A1-203ENST00000450867 CRIPTQ9P021 101 aa6.47□□□□□ -1.37
COL3A1-203ENST00000450867 SNURFQ9Y675 71 aa6.45□□□□□ -1.38
COL3A1-203ENST00000450867 KRTAP19-8Q3LI54 63 aa6.44□□□□□ -1.38
COL3A1-203ENST00000450867 C20orf197Q8N268 126 aa6.43□□□□□ -1.38
COL3A1-203ENST00000450867 ACYP2P14621 99 aa6.42□□□□□ -1.38
COL3A1-203ENST00000450867 SPANXA2-OT1Q8N9U9 137 aa6.42□□□□□ -1.38
COL3A1-203ENST00000450867 MT1BP07438 61 aa6.39□□□□□ -1.39
COL3A1-203ENST00000450867 ADM2Q7Z4H4 148 aa6.39□□□□□ -1.39
COL3A1-203ENST00000450867 Q5VV11 94 aa6.36□□□□□ -1.39
COL3A1-203ENST00000450867 COX7CP15954 63 aa6.35□□□□□ -1.39
COL3A1-203ENST00000450867 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.32□□□□□ -1.4
COL3A1-203ENST00000450867 SPTSSBQ8NFR3 76 aa6.31□□□□□ -1.4
COL3A1-203ENST00000450867 KRTAP3-2Q9BYR7 98 aa6.31□□□□□ -1.4
COL3A1-203ENST00000450867 P0C880 135 aa6.3□□□□□ -1.4
COL3A1-203ENST00000450867 CHKB-CPT1BH3BT56 60 aa6.26□□□□□ -1.41
COL3A1-203ENST00000450867 H7BZZ5 65 aa6.23□□□□□ -1.41
COL3A1-203ENST00000450867 CYSTM1Q9H1C7 97 aa6.22□□□□□ -1.41
COL3A1-203ENST00000450867 R4GN34 69 aa6.22□□□□□ -1.41
COL3A1-203ENST00000450867 KRTAP10-5P60370 271 aa6.21□□□□□ -1.42
COL3A1-203ENST00000450867 ANAPC13Q9BS18 74 aa6.2□□□□□ -1.42
COL3A1-203ENST00000450867 MACF1Q9UPN3 7388 aaKnown RBP6.19□□□□□ -1.42
COL3A1-203ENST00000450867 A6NN06 94 aa6.19□□□□□ -1.42
COL3A1-203ENST00000450867 COA5Q86WW8 74 aa6.18□□□□□ -1.42
COL3A1-203ENST00000450867 KRTAP9-7A8MTY7 169 aa6.17□□□□□ -1.42
COL3A1-203ENST00000450867 M0QZ58 72 aa6.17□□□□□ -1.42
COL3A1-203ENST00000450867 CCDC179H3BU77 68 aa6.08□□□□□ -1.44
COL3A1-203ENST00000450867 PLAC4Q8WY50 150 aa6.08□□□□□ -1.44
COL3A1-203ENST00000450867 SYNE2Q8WXH0 6885 aaKnown RBP6.07□□□□□ -1.44
COL3A1-203ENST00000450867 MT1XP80297 61 aa6.04□□□□□ -1.44
COL3A1-203ENST00000450867 LINC01554Q52M75 96 aa6.03□□□□□ -1.44
COL3A1-203ENST00000450867 PRO2289Q9P1D8 64 aa6.02□□□□□ -1.45
COL3A1-203ENST00000450867 KRTAP6-3Q3LI67 103 aa6.01□□□□□ -1.45
COL3A1-203ENST00000450867 ATP5EP56381 51 aaPredicted RBP6□□□□□ -1.45
COL3A1-203ENST00000450867 KRTAP13-4Q3LI77 160 aa5.98□□□□□ -1.45
COL3A1-203ENST00000450867 SEC61GP60059 68 aa5.95□□□□□ -1.46
COL3A1-203ENST00000450867 SERP1Q9Y6X1 66 aa5.94□□□□□ -1.46
COL3A1-203ENST00000450867 KRTAP12-2P59991 146 aa5.9□□□□□ -1.46
COL3A1-203ENST00000450867 TMEM258P61165 79 aa5.9□□□□□ -1.46
COL3A1-203ENST00000450867 A0A1B0GU33 70 aa5.86□□□□□ -1.47
COL3A1-203ENST00000450867 KRTAP5-9P26371 169 aa5.85□□□□□ -1.47
COL3A1-203ENST00000450867 A0A1B0GU69 56 aa5.83□□□□□ -1.48
COL3A1-203ENST00000450867 KMT2DO14686 5537 aa5.81□□□□□ -1.48
COL3A1-203ENST00000450867 SPATA8Q6RVD6 105 aa5.8□□□□□ -1.48
COL3A1-203ENST00000450867 MUC12Q9UKN1 5478 aa5.78□□□□□ -1.48
COL3A1-203ENST00000450867 KRTAP10-12P60413 245 aa5.77□□□□□ -1.49
COL3A1-203ENST00000450867 LINC01558Q9Y6Z2 57 aa5.76□□□□□ -1.49
COL3A1-203ENST00000450867 A0A0D9SG42 100 aa5.74□□□□□ -1.49
COL3A1-203ENST00000450867 KRTAP10-7P60409 375 aaPredicted RBP5.74□□□□□ -1.49
COL3A1-203ENST00000450867 NEBP20929 6669 aa5.73□□□□□ -1.49
COL3A1-203ENST00000450867 CAMK2N1Q7Z7J9 78 aa5.72□□□□□ -1.49
COL3A1-203ENST00000450867 PRR15LQ9BU68 103 aa5.72□□□□□ -1.49
COL3A1-203ENST00000450867 KRTAP12-1P59990 96 aa5.71□□□□□ -1.5
COL3A1-203ENST00000450867 SMIM26A0A096LP01 95 aa5.7□□□□□ -1.5
COL3A1-203ENST00000450867 MDN1Q9NU22 5596 aa5.69□□□□□ -1.5
COL3A1-203ENST00000450867 KRTAP8-1Q8IUC2 63 aa5.69□□□□□ -1.5
COL3A1-203ENST00000450867 KRTAP4-8A0A0G2JLE6 195 aa5.67□□□□□ -1.5
COL3A1-203ENST00000450867 KRTAP4-8Q9BYQ9 185 aa5.67□□□□□ -1.5
COL3A1-203ENST00000450867 SPINT4Q6UDR6 99 aa5.65□□□□□ -1.5
COL3A1-203ENST00000450867 SPRR2FQ96RM1 72 aa5.64□□□□□ -1.51
COL3A1-203ENST00000450867 A8MU10 97 aa5.63□□□□□ -1.51
COL3A1-203ENST00000450867 UQCR11O14957 56 aa5.56□□□□□ -1.52
COL3A1-203ENST00000450867 V9GYY9 64 aa5.53□□□□□ -1.52
COL3A1-203ENST00000450867 Q1T7F1 81 aa5.52□□□□□ -1.53
COL3A1-203ENST00000450867 LCE1AQ5T7P2 110 aa5.51□□□□□ -1.53
COL3A1-203ENST00000450867 SPRR2EP22531 72 aa5.5□□□□□ -1.53
COL3A1-203ENST00000450867 SPRR2BP35325 72 aa5.5□□□□□ -1.53
COL3A1-203ENST00000450867 SPRR2AP35326 72 aa5.5□□□□□ -1.53
COL3A1-203ENST00000450867 PCP4P48539 62 aa5.5□□□□□ -1.53
COL3A1-203ENST00000450867 C10orf95Q9H7T3 257 aa5.44□□□□□ -1.54
COL3A1-203ENST00000450867 RPS28P62857 69 aaKnown RBP5.43□□□□□ -1.54
COL3A1-203ENST00000450867 MIR22HGQ0VDD5 57 aa5.43□□□□□ -1.54
COL3A1-203ENST00000450867 PSPHP1O15172 72 aa5.42□□□□□ -1.54
COL3A1-203ENST00000450867 KRTAP20-1Q3LI63 56 aa5.42□□□□□ -1.54
COL3A1-203ENST00000450867 KRTAP19-7Q3SYF9 63 aa5.41□□□□□ -1.54
COL3A1-203ENST00000450867 TNP1P09430 55 aa5.36□□□□□ -1.55
COL3A1-203ENST00000450867 KRTAP2-3P0C7H8 128 aa5.36□□□□□ -1.55
COL3A1-203ENST00000450867 KRTAP2-4Q9BYR9 128 aa5.36□□□□□ -1.55
COL3A1-203ENST00000450867 MT1EP04732 61 aa5.34□□□□□ -1.55
COL3A1-203ENST00000450867 SPRR2DP22532 72 aa5.32□□□□□ -1.56
COL3A1-203ENST00000450867 KRTAP19-5Q3LI72 72 aa5.28□□□□□ -1.56
COL3A1-203ENST00000450867 K7ERS5 55 aa5.27□□□□□ -1.57
COL3A1-203ENST00000450867 LCE3AQ5TA76 89 aa5.27□□□□□ -1.57
COL3A1-203ENST00000450867 LCE5AQ5TCM9 118 aa5.26□□□□□ -1.57
COL3A1-203ENST00000450867 A6NED7 52 aa5.25□□□□□ -1.57
COL3A1-203ENST00000450867 KRTAP19-3Q7Z4W3 81 aa5.25□□□□□ -1.57
COL3A1-203ENST00000450867 KRTAP25-1Q3LHN0 102 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms