RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 LCA10Q71F78 164 aa9.41□□□□□ -0.9
RPS28-202ENST00000449223 COA5Q86WW8 74 aa9.41□□□□□ -0.9
RPS28-202ENST00000449223 MT1HP80294 61 aa9.4□□□□□ -0.91
RPS28-202ENST00000449223 KRTAP3-3Q9BYR6 98 aa9.39□□□□□ -0.91
RPS28-202ENST00000449223 CHKB-CPT1BH3BT56 60 aa9.33□□□□□ -0.92
RPS28-202ENST00000449223 SERP1Q9Y6X1 66 aa9.31□□□□□ -0.92
RPS28-202ENST00000449223 LCE2AQ5TA79 106 aaPredicted RBP9.28□□□□□ -0.92
RPS28-202ENST00000449223 CSAG1Q6PB30 78 aa9.27□□□□□ -0.93
RPS28-202ENST00000449223 SPTSSBQ8NFR3 76 aa9.26□□□□□ -0.93
RPS28-202ENST00000449223 M0R2T5 61 aa9.21□□□□□ -0.94
RPS28-202ENST00000449223 RPS28P62857 69 aaKnown RBP9.21□□□□□ -0.94
RPS28-202ENST00000449223 H0YAA0 97 aa9.13□□□□□ -0.95
RPS28-202ENST00000449223 KRTAP10-6P60371 365 aaPredicted RBP9.1□□□□□ -0.95
RPS28-202ENST00000449223 LORP23490 312 aaPredicted RBP9.08□□□□□ -0.96
RPS28-202ENST00000449223 KRTAP9-8Q9BYQ0 159 aa9.04□□□□□ -0.96
RPS28-202ENST00000449223 SMIM26A0A096LP01 95 aa9.02□□□□□ -0.97
RPS28-202ENST00000449223 KRTAP3-2Q9BYR7 98 aa8.98□□□□□ -0.97
RPS28-202ENST00000449223 LINC01558Q9Y6Z2 57 aa8.98□□□□□ -0.97
RPS28-202ENST00000449223 MT2AP02795 61 aa8.96□□□□□ -0.97
RPS28-202ENST00000449223 ADM2Q7Z4H4 148 aa8.96□□□□□ -0.97
RPS28-202ENST00000449223 Q1T7F1 81 aa8.95□□□□□ -0.98
RPS28-202ENST00000449223 V9GYY9 64 aa8.94□□□□□ -0.98
RPS28-202ENST00000449223 SEC61GP60059 68 aa8.91□□□□□ -0.98
RPS28-202ENST00000449223 MT1FP04733 61 aa8.9□□□□□ -0.99
RPS28-202ENST00000449223 P0C880 135 aa8.9□□□□□ -0.99
RPS28-202ENST00000449223 A0A1B0GU69 56 aa8.89□□□□□ -0.99
RPS28-202ENST00000449223 PRR15LQ9BU68 103 aa8.85□□□□□ -0.99
RPS28-202ENST00000449223 KRTAP10-10P60014 251 aa8.83□□□□□ -1
RPS28-202ENST00000449223 CRIPTQ9P021 101 aa8.81□□□□□ -1
RPS28-202ENST00000449223 KRTAP9-3Q9BYQ3 159 aa8.73□□□□□ -1.01
RPS28-202ENST00000449223 A0A1B0GU33 70 aa8.72□□□□□ -1.01
RPS28-202ENST00000449223 PSPHP1O15172 72 aa8.71□□□□□ -1.01
RPS28-202ENST00000449223 M0QZ58 72 aa8.7□□□□□ -1.02
RPS28-202ENST00000449223 Q5VV11 94 aa8.7□□□□□ -1.02
RPS28-202ENST00000449223 SPRR2GQ9BYE4 73 aa8.7□□□□□ -1.02
RPS28-202ENST00000449223 R4GN34 69 aa8.69□□□□□ -1.02
RPS28-202ENST00000449223 KRTAP19-1Q8IUB9 90 aa8.67□□□□□ -1.02
RPS28-202ENST00000449223 KRTAP13-4Q3LI77 160 aa8.64□□□□□ -1.03
RPS28-202ENST00000449223 UQCR11O14957 56 aa8.6□□□□□ -1.03
RPS28-202ENST00000449223 SPATA8Q6RVD6 105 aa8.54□□□□□ -1.04
RPS28-202ENST00000449223 LCE2DQ5TA82 110 aaPredicted RBP8.54□□□□□ -1.04
RPS28-202ENST00000449223 KRTAP19-8Q3LI54 63 aa8.5□□□□□ -1.05
RPS28-202ENST00000449223 LCE2BO14633 110 aa8.49□□□□□ -1.05
RPS28-202ENST00000449223 A6NED7 52 aa8.47□□□□□ -1.05
RPS28-202ENST00000449223 MIR22HGQ0VDD5 57 aa8.45□□□□□ -1.06
RPS28-202ENST00000449223 A6NN06 94 aa8.44□□□□□ -1.06
RPS28-202ENST00000449223 LINC01554Q52M75 96 aa8.44□□□□□ -1.06
RPS28-202ENST00000449223 A8MU10 97 aa8.39□□□□□ -1.07
RPS28-202ENST00000449223 MT1BP07438 61 aa8.38□□□□□ -1.07
RPS28-202ENST00000449223 A0A0D9SG42 100 aa8.37□□□□□ -1.07
RPS28-202ENST00000449223 CDC42SE1Q9NRR8 79 aa8.34□□□□□ -1.08
RPS28-202ENST00000449223 USH2AO75445 5202 aa8.33□□□□□ -1.08
RPS28-202ENST00000449223 KRTAP12-1P59990 96 aa8.3□□□□□ -1.08
RPS28-202ENST00000449223 KRTAP9-2Q9BYQ4 174 aa8.29□□□□□ -1.08
RPS28-202ENST00000449223 PLAC4Q8WY50 150 aa8.26□□□□□ -1.09
RPS28-202ENST00000449223 KRTAP12-2P59991 146 aa8.24□□□□□ -1.09
RPS28-202ENST00000449223 SPINT4Q6UDR6 99 aa8.2□□□□□ -1.1
RPS28-202ENST00000449223 BRK1Q8WUW1 75 aa8.15□□□□□ -1.1
RPS28-202ENST00000449223 K7ERS5 55 aa8.13□□□□□ -1.11
RPS28-202ENST00000449223 SSPOA2VEC9 5147 aa8.1□□□□□ -1.11
RPS28-202ENST00000449223 KRTAP19-6Q3LI70 58 aa8.09□□□□□ -1.11
RPS28-202ENST00000449223 CAMK2N1Q7Z7J9 78 aa8.08□□□□□ -1.12
RPS28-202ENST00000449223 FSIP2Q5CZC0 6907 aa8.06□□□□□ -1.12
RPS28-202ENST00000449223 MT1XP80297 61 aa8.04□□□□□ -1.12
RPS28-202ENST00000449223 KRTAP10-5P60370 271 aa8.03□□□□□ -1.12
RPS28-202ENST00000449223 PRO2289Q9P1D8 64 aa8□□□□□ -1.13
RPS28-202ENST00000449223 CRCT1Q9UGL9 99 aa7.96□□□□□ -1.14
RPS28-202ENST00000449223 PRO0628Q9UI54 55 aa7.89□□□□□ -1.15
RPS28-202ENST00000449223 C10orf95Q9H7T3 257 aa7.86□□□□□ -1.15
RPS28-202ENST00000449223 FCGBPQ9Y6R7 5405 aaPredicted RBP7.81□□□□□ -1.16
RPS28-202ENST00000449223 KRTAP9-6A0A140TA67 174 aa7.75□□□□□ -1.17
RPS28-202ENST00000449223 ROMO1P60602 79 aa7.75□□□□□ -1.17
RPS28-202ENST00000449223 PMAIP1Q13794 54 aa7.71□□□□□ -1.18
RPS28-202ENST00000449223 TNP1P09430 55 aa7.68□□□□□ -1.18
RPS28-202ENST00000449223 KRTAP10-7P60409 375 aaPredicted RBP7.68□□□□□ -1.18
RPS28-202ENST00000449223 KRTAP10-12P60413 245 aa7.67□□□□□ -1.18
RPS28-202ENST00000449223 KRTAP25-1Q3LHN0 102 aa7.65□□□□□ -1.18
RPS28-202ENST00000449223 KRTAP23-1A1A580 65 aa7.46□□□□□ -1.22
RPS28-202ENST00000449223 KMT2DO14686 5537 aa7.44□□□□□ -1.22
RPS28-202ENST00000449223 KRTAP4-8A0A0G2JLE6 195 aa7.42□□□□□ -1.22
RPS28-202ENST00000449223 KRTAP4-8Q9BYQ9 185 aa7.42□□□□□ -1.22
RPS28-202ENST00000449223 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.38□□□□□ -1.23
RPS28-202ENST00000449223 LCE3AQ5TA76 89 aa7.38□□□□□ -1.23
RPS28-202ENST00000449223 MACF1Q9UPN3 7388 aaKnown RBP7.37□□□□□ -1.23
RPS28-202ENST00000449223 PP632Q6XCG6 107 aa7.34□□□□□ -1.23
RPS28-202ENST00000449223 KTN1-AS1Q86SY8 53 aa7.34□□□□□ -1.23
RPS28-202ENST00000449223 KRTAP8-1Q8IUC2 63 aa7.32□□□□□ -1.24
RPS28-202ENST00000449223 PRAC1Q96KF2 57 aa7.22□□□□□ -1.25
RPS28-202ENST00000449223 KRTAP5-9P26371 169 aa7.2□□□□□ -1.26
RPS28-202ENST00000449223 KRTAP19-7Q3SYF9 63 aa7.2□□□□□ -1.26
RPS28-202ENST00000449223 KRTAP6-3Q3LI67 103 aa7.17□□□□□ -1.26
RPS28-202ENST00000449223 KRTAP19-5Q3LI72 72 aa7.17□□□□□ -1.26
RPS28-202ENST00000449223 SYNE2Q8WXH0 6885 aaKnown RBP7.15□□□□□ -1.27
RPS28-202ENST00000449223 KRTAP12-3P60328 96 aa7.11□□□□□ -1.27
RPS28-202ENST00000449223 SPRR2FQ96RM1 72 aa7.09□□□□□ -1.27
RPS28-202ENST00000449223 MT1EP04732 61 aa7.08□□□□□ -1.28
RPS28-202ENST00000449223 KRTAP9-7A8MTY7 169 aa7.06□□□□□ -1.28
RPS28-202ENST00000449223 MUC12Q9UKN1 5478 aa6.97□□□□□ -1.29
RPS28-202ENST00000449223 KRTAP15-1Q3LI76 137 aa6.91□□□□□ -1.3
RPS28-202ENST00000449223 MT1LQ93083 61 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms