RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 H1FX-AS1Q4G0G2 97 aa3.1□□□□□ -1.91
VPS50-205ENST00000441602 Q5VV11 94 aa3.1□□□□□ -1.91
VPS50-205ENST00000441602 BRK1Q8WUW1 75 aa3.1□□□□□ -1.91
VPS50-205ENST00000441602 S4R3F8 94 aa3.1□□□□□ -1.91
VPS50-205ENST00000441602 BIRC6Q9NR09 4857 aa3.1□□□□□ -1.91
VPS50-205ENST00000441602 TNXBP22105 4242 aa3.09□□□□□ -1.91
VPS50-205ENST00000441602 KRTAP3-1Q9BYR8 98 aa3.09□□□□□ -1.92
VPS50-205ENST00000441602 EPPK1P58107 5090 aaKnown RBP3.08□□□□□ -1.92
VPS50-205ENST00000441602 LRP1Q07954 4544 aaKnown RBP3.08□□□□□ -1.92
VPS50-205ENST00000441602 PRO0628Q9UI54 55 aa3.07□□□□□ -1.92
VPS50-205ENST00000441602 UQCR11O14957 56 aa3.06□□□□□ -1.92
VPS50-205ENST00000441602 CSAG1Q6PB30 78 aa3.05□□□□□ -1.92
VPS50-205ENST00000441602 CDC42SE1Q9NRR8 79 aa3.04□□□□□ -1.92
VPS50-205ENST00000441602 HERC2O95714 4834 aa3.04□□□□□ -1.92
VPS50-205ENST00000441602 LCA10Q71F78 164 aa3.02□□□□□ -1.93
VPS50-205ENST00000441602 MIR22HGQ0VDD5 57 aa3.02□□□□□ -1.93
VPS50-205ENST00000441602 A0A1B0GU33 70 aa3.01□□□□□ -1.93
VPS50-205ENST00000441602 MYCBP2O75592 4640 aa3□□□□□ -1.93
VPS50-205ENST00000441602 SPATA8Q6RVD6 105 aa2.99□□□□□ -1.93
VPS50-205ENST00000441602 K7ERS5 55 aa2.97□□□□□ -1.93
VPS50-205ENST00000441602 ABCA13Q86UQ4 5058 aa2.96□□□□□ -1.94
VPS50-205ENST00000441602 H0YAA0 97 aa2.95□□□□□ -1.94
VPS50-205ENST00000441602 ADM2Q7Z4H4 148 aa2.95□□□□□ -1.94
VPS50-205ENST00000441602 KRTAP4-1Q9BYQ7 146 aa2.95□□□□□ -1.94
VPS50-205ENST00000441602 PMAIP1Q13794 54 aa2.94□□□□□ -1.94
VPS50-205ENST00000441602 KRTAP4-8Q9BYQ9 185 aa2.93□□□□□ -1.94
VPS50-205ENST00000441602 M0QZ58 72 aa2.91□□□□□ -1.94
VPS50-205ENST00000441602 KRTAP10-6P60371 365 aaPredicted RBP2.91□□□□□ -1.94
VPS50-205ENST00000441602 A8MU10 97 aa2.89□□□□□ -1.95
VPS50-205ENST00000441602 MUC17Q685J3 4493 aa2.89□□□□□ -1.95
VPS50-205ENST00000441602 P0C880 135 aa2.88□□□□□ -1.95
VPS50-205ENST00000441602 R4GN34 69 aa2.87□□□□□ -1.95
VPS50-205ENST00000441602 PCLOQ9Y6V0 5065 aa2.86□□□□□ -1.95
VPS50-205ENST00000441602 A6NN06 94 aa2.86□□□□□ -1.95
VPS50-205ENST00000441602 A0A0D9SG42 100 aa2.86□□□□□ -1.95
VPS50-205ENST00000441602 LRP2P98164 4655 aa2.86□□□□□ -1.95
VPS50-205ENST00000441602 M0R2T5 61 aa2.85□□□□□ -1.95
VPS50-205ENST00000441602 KRTAP19-2Q3LHN2 52 aa2.85□□□□□ -1.95
VPS50-205ENST00000441602 CRIPTQ9P021 101 aa2.85□□□□□ -1.95
VPS50-205ENST00000441602 HERC1Q15751 4861 aa2.85□□□□□ -1.95
VPS50-205ENST00000441602 KTN1-AS1Q86SY8 53 aa2.84□□□□□ -1.96
VPS50-205ENST00000441602 LPAP08519 4548 aa2.83□□□□□ -1.96
VPS50-205ENST00000441602 KRTAP4-12Q9BQ66 201 aa2.83□□□□□ -1.96
VPS50-205ENST00000441602 KRTAP13-4Q3LI77 160 aa2.81□□□□□ -1.96
VPS50-205ENST00000441602 SPINT4Q6UDR6 99 aa2.81□□□□□ -1.96
VPS50-205ENST00000441602 LINC01554Q52M75 96 aa2.8□□□□□ -1.96
VPS50-205ENST00000441602 KRTAP9-2Q9BYQ4 174 aa2.8□□□□□ -1.96
VPS50-205ENST00000441602 HMCN2Q8NDA2 5059 aa2.79□□□□□ -1.96
VPS50-205ENST00000441602 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.78□□□□□ -1.96
VPS50-205ENST00000441602 KRTAP9-6A0A140TA67 174 aa2.77□□□□□ -1.97
VPS50-205ENST00000441602 ROMO1P60602 79 aa2.77□□□□□ -1.97
VPS50-205ENST00000441602 MT1HP80294 61 aa2.77□□□□□ -1.97
VPS50-205ENST00000441602 KRTAP12-1P59990 96 aa2.76□□□□□ -1.97
VPS50-205ENST00000441602 KRTAP12-2P59991 146 aa2.73□□□□□ -1.97
VPS50-205ENST00000441602 CAMK2N1Q7Z7J9 78 aa2.73□□□□□ -1.97
VPS50-205ENST00000441602 KRTAP10-10P60014 251 aa2.72□□□□□ -1.97
VPS50-205ENST00000441602 KRTAP19-1Q8IUB9 90 aa2.72□□□□□ -1.97
VPS50-205ENST00000441602 PLAC4Q8WY50 150 aa2.7□□□□□ -1.98
VPS50-205ENST00000441602 FLGP20930 4061 aaPredicted RBP2.69□□□□□ -1.98
VPS50-205ENST00000441602 PRAC1Q96KF2 57 aa2.69□□□□□ -1.98
VPS50-205ENST00000441602 MT2AP02795 61 aa2.68□□□□□ -1.98
VPS50-205ENST00000441602 SPRR2GQ9BYE4 73 aa2.67□□□□□ -1.98
VPS50-205ENST00000441602 KRTAP4-8A0A0G2JLE6 195 aa2.67□□□□□ -1.98
VPS50-205ENST00000441602 KRTAP9-9Q9BYP9 154 aa2.67□□□□□ -1.98
VPS50-205ENST00000441602 KRTAP9-4Q9BYQ2 154 aa2.67□□□□□ -1.98
VPS50-205ENST00000441602 LCE3BQ5TA77 95 aa2.66□□□□□ -1.98
VPS50-205ENST00000441602 RNF213Q63HN8 5207 aa2.66□□□□□ -1.98
VPS50-205ENST00000441602 KRTAP25-1Q3LHN0 102 aa2.66□□□□□ -1.98
VPS50-205ENST00000441602 MT1FP04733 61 aa2.65□□□□□ -1.99
VPS50-205ENST00000441602 KRTAP9-8Q9BYQ0 159 aa2.65□□□□□ -1.99
VPS50-205ENST00000441602 KRTAP19-4Q3LI73 84 aa2.62□□□□□ -1.99
VPS50-205ENST00000441602 KRTAP19-8Q3LI54 63 aa2.61□□□□□ -1.99
VPS50-205ENST00000441602 KRTAP4-7Q9BYR0 210 aa2.6□□□□□ -1.99
VPS50-205ENST00000441602 TNP1P09430 55 aa2.6□□□□□ -1.99
VPS50-205ENST00000441602 C10orf95Q9H7T3 257 aa2.59□□□□□ -1.99
VPS50-205ENST00000441602 LCE1DQ5T752 114 aa2.59□□□□□ -1.99
VPS50-205ENST00000441602 UBR4Q5T4S7 5183 aa2.59□□□□□ -2
VPS50-205ENST00000441602 PP632Q6XCG6 107 aa2.58□□□□□ -2
VPS50-205ENST00000441602 FAT4Q6V0I7 4981 aa2.57□□□□□ -2
VPS50-205ENST00000441602 KRTAP9-3Q9BYQ3 159 aa2.56□□□□□ -2
VPS50-205ENST00000441602 PRO2289Q9P1D8 64 aa2.56□□□□□ -2
VPS50-205ENST00000441602 KRTAP4-9Q9BYQ8 210 aa2.55□□□□□ -2
VPS50-205ENST00000441602 KRTAP23-1A1A580 65 aa2.53□□□□□ -2
VPS50-205ENST00000441602 MUC2Q02817 5179 aa2.53□□□□□ -2
VPS50-205ENST00000441602 MT1BP07438 61 aa2.52□□□□□ -2.01
VPS50-205ENST00000441602 KRTAP4-2Q9BYR5 136 aa2.46□□□□□ -2.02
VPS50-205ENST00000441602 MT1XP80297 61 aa2.45□□□□□ -2.02
VPS50-205ENST00000441602 KRTAP10-5P60370 271 aa2.45□□□□□ -2.02
VPS50-205ENST00000441602 KRTAP4-11Q9BYQ6 195 aa2.43□□□□□ -2.02
VPS50-205ENST00000441602 KRTAP10-12P60413 245 aa2.42□□□□□ -2.02
VPS50-205ENST00000441602 H3BS24 57 aa2.4□□□□□ -2.03
VPS50-205ENST00000441602 LCE3AQ5TA76 89 aa2.39□□□□□ -2.03
VPS50-205ENST00000441602 LCE5AQ5TCM9 118 aa2.39□□□□□ -2.03
VPS50-205ENST00000441602 A0A0A0MQY5 61 aa2.38□□□□□ -2.03
VPS50-205ENST00000441602 KRTAP9-7A8MTY7 169 aa2.37□□□□□ -2.03
VPS50-205ENST00000441602 KRTAP8-1Q8IUC2 63 aa2.37□□□□□ -2.03
VPS50-205ENST00000441602 KRTAP10-7P60409 375 aaPredicted RBP2.35□□□□□ -2.03
VPS50-205ENST00000441602 KRTAP19-6Q3LI70 58 aa2.34□□□□□ -2.03
VPS50-205ENST00000441602 KRTAP12-3P60328 96 aa2.33□□□□□ -2.04
VPS50-205ENST00000441602 KRTAP15-1Q3LI76 137 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 289.4 ms