RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 LCA10Q71F78 164 aa11.26□□□□□ -0.61
CPSF4-204ENST00000436336 CHKB-CPT1BH3BT56 60 aa11.24□□□□□ -0.61
CPSF4-204ENST00000436336 MT1HP80294 61 aa11.21□□□□□ -0.61
CPSF4-204ENST00000436336 KRTAP3-3Q9BYR6 98 aa11.19□□□□□ -0.62
CPSF4-204ENST00000436336 SERP1Q9Y6X1 66 aa11.16□□□□□ -0.62
CPSF4-204ENST00000436336 SPTSSBQ8NFR3 76 aa11.12□□□□□ -0.63
CPSF4-204ENST00000436336 CSAG1Q6PB30 78 aa11.11□□□□□ -0.63
CPSF4-204ENST00000436336 M0R2T5 61 aa11.09□□□□□ -0.63
CPSF4-204ENST00000436336 LCE2AQ5TA79 106 aaPredicted RBP11.01□□□□□ -0.65
CPSF4-204ENST00000436336 RPS28P62857 69 aaKnown RBP10.99□□□□□ -0.65
CPSF4-204ENST00000436336 KRTAP10-6P60371 365 aaPredicted RBP10.85□□□□□ -0.67
CPSF4-204ENST00000436336 H0YAA0 97 aa10.84□□□□□ -0.67
CPSF4-204ENST00000436336 SMIM26A0A096LP01 95 aa10.82□□□□□ -0.68
CPSF4-204ENST00000436336 LORP23490 312 aaPredicted RBP10.8□□□□□ -0.68
CPSF4-204ENST00000436336 ADM2Q7Z4H4 148 aa10.76□□□□□ -0.69
CPSF4-204ENST00000436336 KRTAP9-8Q9BYQ0 159 aa10.75□□□□□ -0.69
CPSF4-204ENST00000436336 LINC01558Q9Y6Z2 57 aa10.75□□□□□ -0.69
CPSF4-204ENST00000436336 SEC61GP60059 68 aa10.72□□□□□ -0.69
CPSF4-204ENST00000436336 KRTAP3-2Q9BYR7 98 aa10.71□□□□□ -0.69
CPSF4-204ENST00000436336 V9GYY9 64 aa10.7□□□□□ -0.7
CPSF4-204ENST00000436336 Q1T7F1 81 aa10.7□□□□□ -0.7
CPSF4-204ENST00000436336 A0A1B0GU69 56 aa10.69□□□□□ -0.7
CPSF4-204ENST00000436336 MT2AP02795 61 aa10.69□□□□□ -0.7
CPSF4-204ENST00000436336 P0C880 135 aa10.64□□□□□ -0.71
CPSF4-204ENST00000436336 PRR15LQ9BU68 103 aa10.63□□□□□ -0.71
CPSF4-204ENST00000436336 MT1FP04733 61 aa10.61□□□□□ -0.71
CPSF4-204ENST00000436336 KRTAP10-10P60014 251 aa10.58□□□□□ -0.72
CPSF4-204ENST00000436336 CRIPTQ9P021 101 aa10.5□□□□□ -0.73
CPSF4-204ENST00000436336 PSPHP1O15172 72 aa10.5□□□□□ -0.73
CPSF4-204ENST00000436336 SVIPQ8NHG7 77 aa10.47□□□□□ -0.73
CPSF4-204ENST00000436336 A0A1B0GU33 70 aa10.46□□□□□ -0.74
CPSF4-204ENST00000436336 R4GN34 69 aa10.42□□□□□ -0.74
CPSF4-204ENST00000436336 Q5VV11 94 aa10.41□□□□□ -0.74
CPSF4-204ENST00000436336 M0QZ58 72 aa10.38□□□□□ -0.75
CPSF4-204ENST00000436336 KRTAP9-3Q9BYQ3 159 aa10.38□□□□□ -0.75
CPSF4-204ENST00000436336 SPRR2GQ9BYE4 73 aa10.33□□□□□ -0.76
CPSF4-204ENST00000436336 KRTAP13-4Q3LI77 160 aa10.32□□□□□ -0.76
CPSF4-204ENST00000436336 UQCR11O14957 56 aa10.31□□□□□ -0.76
CPSF4-204ENST00000436336 KRTAP19-1Q8IUB9 90 aa10.31□□□□□ -0.76
CPSF4-204ENST00000436336 SPATA8Q6RVD6 105 aa10.28□□□□□ -0.76
CPSF4-204ENST00000436336 A6NED7 52 aa10.19□□□□□ -0.78
CPSF4-204ENST00000436336 LINC01554Q52M75 96 aa10.18□□□□□ -0.78
CPSF4-204ENST00000436336 MIR22HGQ0VDD5 57 aa10.16□□□□□ -0.78
CPSF4-204ENST00000436336 LCE2DQ5TA82 110 aaPredicted RBP10.14□□□□□ -0.79
CPSF4-204ENST00000436336 LCE2BO14633 110 aa10.13□□□□□ -0.79
CPSF4-204ENST00000436336 KRTAP19-8Q3LI54 63 aa10.11□□□□□ -0.79
CPSF4-204ENST00000436336 A0A0D9SG42 100 aa10.1□□□□□ -0.79
CPSF4-204ENST00000436336 A8MU10 97 aa10.08□□□□□ -0.8
CPSF4-204ENST00000436336 A6NN06 94 aa10.04□□□□□ -0.8
CPSF4-204ENST00000436336 MT1BP07438 61 aa9.99□□□□□ -0.81
CPSF4-204ENST00000436336 CDC42SE1Q9NRR8 79 aa9.98□□□□□ -0.81
CPSF4-204ENST00000436336 KRTAP12-1P59990 96 aa9.93□□□□□ -0.82
CPSF4-204ENST00000436336 PLAC4Q8WY50 150 aa9.93□□□□□ -0.82
CPSF4-204ENST00000436336 USH2AO75445 5202 aa9.92□□□□□ -0.82
CPSF4-204ENST00000436336 SPINT4Q6UDR6 99 aa9.9□□□□□ -0.82
CPSF4-204ENST00000436336 KRTAP9-2Q9BYQ4 174 aa9.89□□□□□ -0.83
CPSF4-204ENST00000436336 KRTAP12-2P59991 146 aa9.87□□□□□ -0.83
CPSF4-204ENST00000436336 BRK1Q8WUW1 75 aa9.83□□□□□ -0.84
CPSF4-204ENST00000436336 K7ERS5 55 aa9.78□□□□□ -0.84
CPSF4-204ENST00000436336 CAMK2N1Q7Z7J9 78 aa9.72□□□□□ -0.85
CPSF4-204ENST00000436336 SSPOA2VEC9 5147 aa9.67□□□□□ -0.86
CPSF4-204ENST00000436336 FSIP2Q5CZC0 6907 aa9.66□□□□□ -0.86
CPSF4-204ENST00000436336 KRTAP19-6Q3LI70 58 aa9.62□□□□□ -0.87
CPSF4-204ENST00000436336 MT1XP80297 61 aa9.59□□□□□ -0.87
CPSF4-204ENST00000436336 KRTAP10-5P60370 271 aa9.56□□□□□ -0.88
CPSF4-204ENST00000436336 PRO2289Q9P1D8 64 aa9.56□□□□□ -0.88
CPSF4-204ENST00000436336 CRCT1Q9UGL9 99 aa9.5□□□□□ -0.89
CPSF4-204ENST00000436336 PRO0628Q9UI54 55 aa9.45□□□□□ -0.9
CPSF4-204ENST00000436336 C10orf95Q9H7T3 257 aa9.41□□□□□ -0.9
CPSF4-204ENST00000436336 ROMO1P60602 79 aa9.3□□□□□ -0.92
CPSF4-204ENST00000436336 PMAIP1Q13794 54 aa9.29□□□□□ -0.92
CPSF4-204ENST00000436336 FCGBPQ9Y6R7 5405 aaPredicted RBP9.27□□□□□ -0.93
CPSF4-204ENST00000436336 KRTAP9-6A0A140TA67 174 aa9.24□□□□□ -0.93
CPSF4-204ENST00000436336 TNP1P09430 55 aa9.2□□□□□ -0.94
CPSF4-204ENST00000436336 KRTAP10-7P60409 375 aaPredicted RBP9.18□□□□□ -0.94
CPSF4-204ENST00000436336 KRTAP25-1Q3LHN0 102 aa9.14□□□□□ -0.95
CPSF4-204ENST00000436336 KRTAP10-12P60413 245 aa9.11□□□□□ -0.95
CPSF4-204ENST00000436336 KRTAP4-8A0A0G2JLE6 195 aa8.89□□□□□ -0.99
CPSF4-204ENST00000436336 KRTAP4-8Q9BYQ9 185 aa8.89□□□□□ -0.99
CPSF4-204ENST00000436336 MACF1Q9UPN3 7388 aaKnown RBP8.89□□□□□ -0.99
CPSF4-204ENST00000436336 KMT2DO14686 5537 aa8.87□□□□□ -0.99
CPSF4-204ENST00000436336 KRTAP23-1A1A580 65 aa8.85□□□□□ -0.99
CPSF4-204ENST00000436336 LCE3AQ5TA76 89 aa8.85□□□□□ -0.99
CPSF4-204ENST00000436336 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.8□□□□□ -1
CPSF4-204ENST00000436336 KTN1-AS1Q86SY8 53 aa8.8□□□□□ -1
CPSF4-204ENST00000436336 PP632Q6XCG6 107 aa8.77□□□□□ -1.01
CPSF4-204ENST00000436336 KRTAP8-1Q8IUC2 63 aa8.76□□□□□ -1.01
CPSF4-204ENST00000436336 PRAC1Q96KF2 57 aa8.71□□□□□ -1.02
CPSF4-204ENST00000436336 SYNE2Q8WXH0 6885 aaKnown RBP8.64□□□□□ -1.03
CPSF4-204ENST00000436336 KRTAP19-5Q3LI72 72 aa8.58□□□□□ -1.04
CPSF4-204ENST00000436336 KRTAP19-7Q3SYF9 63 aa8.56□□□□□ -1.04
CPSF4-204ENST00000436336 KRTAP5-9P26371 169 aa8.52□□□□□ -1.05
CPSF4-204ENST00000436336 KRTAP6-3Q3LI67 103 aa8.52□□□□□ -1.05
CPSF4-204ENST00000436336 KRTAP12-3P60328 96 aa8.51□□□□□ -1.05
CPSF4-204ENST00000436336 SPRR2FQ96RM1 72 aa8.49□□□□□ -1.05
CPSF4-204ENST00000436336 MT1EP04732 61 aa8.43□□□□□ -1.06
CPSF4-204ENST00000436336 KRTAP9-7A8MTY7 169 aa8.42□□□□□ -1.06
CPSF4-204ENST00000436336 MUC12Q9UKN1 5478 aa8.29□□□□□ -1.08
CPSF4-204ENST00000436336 KRTAP15-1Q3LI76 137 aa8.26□□□□□ -1.09
CPSF4-204ENST00000436336 MT1LQ93083 61 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms