RNA–Protein interactions for RNA: ENST00000433822.1

COL17A1-204, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-204ENST00000433822 PRR4Q16378 134 aa4.25□□□□□ -1.73
COL17A1-204ENST00000433822 SPAG11AQ6PDA7 123 aa4.25□□□□□ -1.73
COL17A1-204ENST00000433822 COA5Q86WW8 74 aa4.25□□□□□ -1.73
COL17A1-204ENST00000433822 RNF213Q63HN8 5207 aa4.24□□□□□ -1.73
COL17A1-204ENST00000433822 KRTAP16-1A8MUX0 517 aa4.23□□□□□ -1.73
COL17A1-204ENST00000433822 PCOTHQ58A44 107 aa4.23□□□□□ -1.73
COL17A1-204ENST00000433822 LINC01558Q9Y6Z2 57 aa4.22□□□□□ -1.73
COL17A1-204ENST00000433822 IGKV2D-30A0A075B6S6 120 aa4.21□□□□□ -1.74
COL17A1-204ENST00000433822 Q5W150 140 aa4.21□□□□□ -1.74
COL17A1-204ENST00000433822 Q75L30 129 aa4.21□□□□□ -1.74
COL17A1-204ENST00000433822 PRR26Q8N8Z3 221 aa4.21□□□□□ -1.74
COL17A1-204ENST00000433822 TYMSOSQ8TAI1 123 aa4.21□□□□□ -1.74
COL17A1-204ENST00000433822 ACYP2P14621 99 aa4.2□□□□□ -1.74
COL17A1-204ENST00000433822 Q5VV11 94 aa4.2□□□□□ -1.74
COL17A1-204ENST00000433822 BRK1Q8WUW1 75 aa4.2□□□□□ -1.74
COL17A1-204ENST00000433822 DMAC1Q96GE9 116 aa4.2□□□□□ -1.74
COL17A1-204ENST00000433822 HRES1P13985 223 aa4.19□□□□□ -1.74
COL17A1-204ENST00000433822 VPS13BQ7Z7G8 4022 aa4.19□□□□□ -1.74
COL17A1-204ENST00000433822 A8MUN3 132 aa4.18□□□□□ -1.74
COL17A1-204ENST00000433822 LINC00304Q8N9R0 145 aa4.17□□□□□ -1.74
COL17A1-204ENST00000433822 PSPHP1O15172 72 aa4.16□□□□□ -1.74
COL17A1-204ENST00000433822 PRR15LQ9BU68 103 aa4.15□□□□□ -1.75
COL17A1-204ENST00000433822 LRP1Q07954 4544 aaKnown RBP4.15□□□□□ -1.75
COL17A1-204ENST00000433822 KRTAP10-4P60372 401 aaPredicted RBP4.14□□□□□ -1.75
COL17A1-204ENST00000433822 LRP2P98164 4655 aa4.14□□□□□ -1.75
COL17A1-204ENST00000433822 CHKB-CPT1BH3BT56 60 aa4.12□□□□□ -1.75
COL17A1-204ENST00000433822 C7orf65Q6ZTY9 151 aa4.11□□□□□ -1.75
COL17A1-204ENST00000433822 C20orf166-AS1Q96NR2 134 aa4.11□□□□□ -1.75
COL17A1-204ENST00000433822 A8MUU9 505 aa4.1□□□□□ -1.75
COL17A1-204ENST00000433822 ATP11AUNQ6ZP68 121 aa4.1□□□□□ -1.75
COL17A1-204ENST00000433822 CDC42SE1Q9NRR8 79 aa4.1□□□□□ -1.75
COL17A1-204ENST00000433822 A6NED7 52 aa4.08□□□□□ -1.76
COL17A1-204ENST00000433822 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
COL17A1-204ENST00000433822 FAT3Q8TDW7 4589 aa4.08□□□□□ -1.76
COL17A1-204ENST00000433822 Q5VSD8 79 aa4.07□□□□□ -1.76
COL17A1-204ENST00000433822 PKHD1L1Q86WI1 4243 aa4.07□□□□□ -1.76
COL17A1-204ENST00000433822 MT3P25713 68 aa4.06□□□□□ -1.76
COL17A1-204ENST00000433822 LCA10Q71F78 164 aa4.05□□□□□ -1.76
COL17A1-204ENST00000433822 SPTSSBQ8NFR3 76 aa4.04□□□□□ -1.76
COL17A1-204ENST00000433822 FAT4Q6V0I7 4981 aa4.04□□□□□ -1.76
COL17A1-204ENST00000433822 A0A1B0GU69 56 aa4.02□□□□□ -1.77
COL17A1-204ENST00000433822 SMR3BP02814 79 aaPredicted RBP4.02□□□□□ -1.77
COL17A1-204ENST00000433822 PMAIP1Q13794 54 aa4.02□□□□□ -1.77
COL17A1-204ENST00000433822 RETNLBQ9BQ08 111 aa4.02□□□□□ -1.77
COL17A1-204ENST00000433822 SPINK7P58062 85 aa4□□□□□ -1.77
COL17A1-204ENST00000433822 KRTAP10-8P60410 259 aa3.99□□□□□ -1.77
COL17A1-204ENST00000433822 SPATA8Q6RVD6 105 aa3.99□□□□□ -1.77
COL17A1-204ENST00000433822 MUC2Q02817 5179 aa3.98□□□□□ -1.77
COL17A1-204ENST00000433822 A6NN06 94 aa3.98□□□□□ -1.77
COL17A1-204ENST00000433822 UQCR11O14957 56 aa3.98□□□□□ -1.77
COL17A1-204ENST00000433822 A8MU10 97 aa3.97□□□□□ -1.77
COL17A1-204ENST00000433822 KTN1-AS1Q86SY8 53 aa3.97□□□□□ -1.77
COL17A1-204ENST00000433822 KRTAP5-4Q6L8H1 288 aa3.96□□□□□ -1.78
COL17A1-204ENST00000433822 TNXBP22105 4242 aa3.94□□□□□ -1.78
COL17A1-204ENST00000433822 C9orf92A6NGG3 77 aa3.94□□□□□ -1.78
COL17A1-204ENST00000433822 SEC61GP60059 68 aa3.94□□□□□ -1.78
COL17A1-204ENST00000433822 COX6B2Q6YFQ2 88 aa3.94□□□□□ -1.78
COL17A1-204ENST00000433822 KRTAP5-9P26371 169 aa3.93□□□□□ -1.78
COL17A1-204ENST00000433822 FSIP2Q5CZC0 6907 aa3.93□□□□□ -1.78
COL17A1-204ENST00000433822 RPL37P61927 97 aaKnown RBP3.92□□□□□ -1.78
COL17A1-204ENST00000433822 MIR22HGQ0VDD5 57 aa3.92□□□□□ -1.78
COL17A1-204ENST00000433822 KRTAP4-4Q9BYR3 166 aa3.92□□□□□ -1.78
COL17A1-204ENST00000433822 KRTAP10-5P60370 271 aa3.9□□□□□ -1.79
COL17A1-204ENST00000433822 LPAP08519 4548 aa3.87□□□□□ -1.79
COL17A1-204ENST00000433822 MT1HL1P0DM35 61 aa3.85□□□□□ -1.79
COL17A1-204ENST00000433822 TPRXLQ17RH7 258 aa3.83□□□□□ -1.8
COL17A1-204ENST00000433822 A0A1B0GU33 70 aa3.82□□□□□ -1.8
COL17A1-204ENST00000433822 H1FX-AS1Q4G0G2 97 aa3.82□□□□□ -1.8
COL17A1-204ENST00000433822 KRTAP9-6A8MVA2 160 aa3.81□□□□□ -1.8
COL17A1-204ENST00000433822 H0YAA0 97 aa3.8□□□□□ -1.8
COL17A1-204ENST00000433822 RBM12B-AS1Q9P1G2 102 aa3.77□□□□□ -1.81
COL17A1-204ENST00000433822 S4R3F8 94 aa3.77□□□□□ -1.81
COL17A1-204ENST00000433822 CRCT1Q9UGL9 99 aa3.76□□□□□ -1.81
COL17A1-204ENST00000433822 K7ERS5 55 aa3.74□□□□□ -1.81
COL17A1-204ENST00000433822 SEC61BP60468 96 aaKnown RBP3.67□□□□□ -1.82
COL17A1-204ENST00000433822 CSAG1Q6PB30 78 aa3.66□□□□□ -1.82
COL17A1-204ENST00000433822 PRAC1Q96KF2 57 aa3.66□□□□□ -1.82
COL17A1-204ENST00000433822 ADM2Q7Z4H4 148 aa3.65□□□□□ -1.83
COL17A1-204ENST00000433822 M0QZ58 72 aa3.64□□□□□ -1.83
COL17A1-204ENST00000433822 LINC01554Q52M75 96 aa3.64□□□□□ -1.83
COL17A1-204ENST00000433822 KRTAP10-12P60413 245 aa3.62□□□□□ -1.83
COL17A1-204ENST00000433822 P0C880 135 aa3.61□□□□□ -1.83
COL17A1-204ENST00000433822 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
COL17A1-204ENST00000433822 KRTAP13-4Q3LI77 160 aa3.61□□□□□ -1.83
COL17A1-204ENST00000433822 ROMO1P60602 79 aa3.6□□□□□ -1.83
COL17A1-204ENST00000433822 KRTAP12-1P59990 96 aa3.54□□□□□ -1.84
COL17A1-204ENST00000433822 MUC17Q685J3 4493 aa3.52□□□□□ -1.85
COL17A1-204ENST00000433822 A0A0D9SG42 100 aa3.52□□□□□ -1.85
COL17A1-204ENST00000433822 LCE1FQ5T754 118 aa3.52□□□□□ -1.85
COL17A1-204ENST00000433822 OBSCNQ5VST9 7968 aa3.51□□□□□ -1.85
COL17A1-204ENST00000433822 KRTAP19-2Q3LHN2 52 aa3.51□□□□□ -1.85
COL17A1-204ENST00000433822 KRTAP12-2P59991 146 aa3.5□□□□□ -1.85
COL17A1-204ENST00000433822 KRTAP4-1Q9BYQ7 146 aa3.48□□□□□ -1.85
COL17A1-204ENST00000433822 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
COL17A1-204ENST00000433822 R4GN34 69 aa3.47□□□□□ -1.85
COL17A1-204ENST00000433822 SYNE2Q8WXH0 6885 aaKnown RBP3.47□□□□□ -1.85
COL17A1-204ENST00000433822 SSPOA2VEC9 5147 aa3.46□□□□□ -1.86
COL17A1-204ENST00000433822 CRIPTQ9P021 101 aa3.45□□□□□ -1.86
COL17A1-204ENST00000433822 SPINT4Q6UDR6 99 aa3.44□□□□□ -1.86
COL17A1-204ENST00000433822 USH2AO75445 5202 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms