RNA–Protein interactions for RNA: ENST00000428680.6

CNOT4-206, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 4,642 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-206ENST00000428680 KRTAP13-1Q8IUC0 172 aa3.96□□□□□ -1.78
CNOT4-206ENST00000428680 NOTCH2NLQ7Z3S9 236 aa3.94□□□□□ -1.78
CNOT4-206ENST00000428680 EPPK1P58107 5090 aaKnown RBP3.94□□□□□ -1.78
CNOT4-206ENST00000428680 KRTAP7-1Q8IUC3 87 aa3.94□□□□□ -1.78
CNOT4-206ENST00000428680 TNXBP22105 4242 aa3.94□□□□□ -1.78
CNOT4-206ENST00000428680 FAT3Q8TDW7 4589 aa3.93□□□□□ -1.78
CNOT4-206ENST00000428680 PKHD1L1Q86WI1 4243 aa3.93□□□□□ -1.78
CNOT4-206ENST00000428680 KRTAP1-4P0C5Y4 121 aa3.93□□□□□ -1.78
CNOT4-206ENST00000428680 PRO2289Q9P1D8 64 aa3.92□□□□□ -1.78
CNOT4-206ENST00000428680 PRO0628Q9UI54 55 aa3.9□□□□□ -1.78
CNOT4-206ENST00000428680 PCLOQ9Y6V0 5065 aa3.9□□□□□ -1.78
CNOT4-206ENST00000428680 DNAH5Q8TE73 4624 aa3.89□□□□□ -1.79
CNOT4-206ENST00000428680 HYDINQ4G0P3 5121 aa3.89□□□□□ -1.79
CNOT4-206ENST00000428680 HSPG2P98160 4391 aa3.86□□□□□ -1.79
CNOT4-206ENST00000428680 TNP1P09430 55 aa3.86□□□□□ -1.79
CNOT4-206ENST00000428680 KRTAP13-3Q3SY46 172 aa3.86□□□□□ -1.79
CNOT4-206ENST00000428680 APOBP04114 4563 aaKnown RBP3.86□□□□□ -1.79
CNOT4-206ENST00000428680 SPATA8Q6RVD6 105 aa3.85□□□□□ -1.79
CNOT4-206ENST00000428680 LINC01558Q9Y6Z2 57 aa3.84□□□□□ -1.8
CNOT4-206ENST00000428680 KIAA1109Q2LD37 5005 aa3.82□□□□□ -1.8
CNOT4-206ENST00000428680 ROMO1P60602 79 aa3.8□□□□□ -1.8
CNOT4-206ENST00000428680 FAT1Q14517 4588 aa3.76□□□□□ -1.81
CNOT4-206ENST00000428680 LPAP08519 4548 aa3.75□□□□□ -1.81
CNOT4-206ENST00000428680 LCE2DQ5TA82 110 aaPredicted RBP3.72□□□□□ -1.81
CNOT4-206ENST00000428680 ABCA13Q86UQ4 5058 aa3.71□□□□□ -1.82
CNOT4-206ENST00000428680 Q5VV11 94 aa3.71□□□□□ -1.82
CNOT4-206ENST00000428680 KTN1-AS1Q86SY8 53 aa3.69□□□□□ -1.82
CNOT4-206ENST00000428680 A8MU10 97 aa3.68□□□□□ -1.82
CNOT4-206ENST00000428680 A6NN06 94 aa3.67□□□□□ -1.82
CNOT4-206ENST00000428680 A0A0A0MQY5 61 aa3.66□□□□□ -1.82
CNOT4-206ENST00000428680 HERC1Q15751 4861 aa3.64□□□□□ -1.83
CNOT4-206ENST00000428680 KRTAP9-6A0A140TA67 174 aa3.62□□□□□ -1.83
CNOT4-206ENST00000428680 LCE2AQ5TA79 106 aaPredicted RBP3.6□□□□□ -1.83
CNOT4-206ENST00000428680 KRTAP9-2Q9BYQ4 174 aa3.59□□□□□ -1.83
CNOT4-206ENST00000428680 PRAC1Q96KF2 57 aa3.59□□□□□ -1.83
CNOT4-206ENST00000428680 MUC17Q685J3 4493 aa3.58□□□□□ -1.84
CNOT4-206ENST00000428680 PP632Q6XCG6 107 aa3.56□□□□□ -1.84
CNOT4-206ENST00000428680 HMCN2Q8NDA2 5059 aa3.56□□□□□ -1.84
CNOT4-206ENST00000428680 KRTAP16-1A8MUX0 517 aa3.55□□□□□ -1.84
CNOT4-206ENST00000428680 C10orf95Q9H7T3 257 aa3.55□□□□□ -1.84
CNOT4-206ENST00000428680 KRTAP25-1Q3LHN0 102 aa3.53□□□□□ -1.84
CNOT4-206ENST00000428680 P0C880 135 aa3.52□□□□□ -1.85
CNOT4-206ENST00000428680 CYSTM1Q9H1C7 97 aa3.52□□□□□ -1.85
CNOT4-206ENST00000428680 CRCT1Q9UGL9 99 aa3.49□□□□□ -1.85
CNOT4-206ENST00000428680 LRP1Q07954 4544 aaKnown RBP3.44□□□□□ -1.86
CNOT4-206ENST00000428680 KRTAP10-6P60371 365 aaPredicted RBP3.43□□□□□ -1.86
CNOT4-206ENST00000428680 H0YAA0 97 aa3.42□□□□□ -1.86
CNOT4-206ENST00000428680 MT1HP80294 61 aa3.42□□□□□ -1.86
CNOT4-206ENST00000428680 FLGP20930 4061 aaPredicted RBP3.42□□□□□ -1.86
CNOT4-206ENST00000428680 LORP23490 312 aaPredicted RBP3.38□□□□□ -1.87
CNOT4-206ENST00000428680 KRTAP3-3Q9BYR6 98 aa3.37□□□□□ -1.87
CNOT4-206ENST00000428680 KRTAP3-2Q9BYR7 98 aa3.37□□□□□ -1.87
CNOT4-206ENST00000428680 RNF213Q63HN8 5207 aa3.33□□□□□ -1.88
CNOT4-206ENST00000428680 LCE2CQ5TA81 110 aa3.32□□□□□ -1.88
CNOT4-206ENST00000428680 KRTAP4-1Q9BYQ7 146 aa3.29□□□□□ -1.88
CNOT4-206ENST00000428680 KRTAP15-1Q3LI76 137 aa3.28□□□□□ -1.88
CNOT4-206ENST00000428680 KRTAP19-2Q3LHN2 52 aa3.27□□□□□ -1.89
CNOT4-206ENST00000428680 KRTAP13-4Q3LI77 160 aa3.27□□□□□ -1.89
CNOT4-206ENST00000428680 H3BS24 57 aa3.26□□□□□ -1.89
CNOT4-206ENST00000428680 KRTAP8-1Q8IUC2 63 aa3.26□□□□□ -1.89
CNOT4-206ENST00000428680 FAT4Q6V0I7 4981 aa3.24□□□□□ -1.89
CNOT4-206ENST00000428680 KRTAP12-2P59991 146 aa3.24□□□□□ -1.89
CNOT4-206ENST00000428680 KRTAP10-12P60413 245 aa3.24□□□□□ -1.89
CNOT4-206ENST00000428680 NDUFAF8A1L188 74 aa3.22□□□□□ -1.89
CNOT4-206ENST00000428680 KRTAP9-7A8MTY7 169 aa3.21□□□□□ -1.89
CNOT4-206ENST00000428680 KRTAP3-1Q9BYR8 98 aa3.21□□□□□ -1.89
CNOT4-206ENST00000428680 KRTAP12-1P59990 96 aa3.2□□□□□ -1.9
CNOT4-206ENST00000428680 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.18□□□□□ -1.9
CNOT4-206ENST00000428680 KRTAP19-6Q3LI70 58 aa3.18□□□□□ -1.9
CNOT4-206ENST00000428680 LRP2P98164 4655 aa3.18□□□□□ -1.9
CNOT4-206ENST00000428680 UBR4Q5T4S7 5183 aa3.17□□□□□ -1.9
CNOT4-206ENST00000428680 MT2AP02795 61 aa3.17□□□□□ -1.9
CNOT4-206ENST00000428680 KRTAP6-3Q3LI67 103 aa3.17□□□□□ -1.9
CNOT4-206ENST00000428680 KRTAP9-8Q9BYQ0 159 aa3.15□□□□□ -1.9
CNOT4-206ENST00000428680 KRTAP9-3Q9BYQ3 159 aa3.11□□□□□ -1.91
CNOT4-206ENST00000428680 SPRR2FQ96RM1 72 aa3.1□□□□□ -1.91
CNOT4-206ENST00000428680 MUC2Q02817 5179 aa3.1□□□□□ -1.91
CNOT4-206ENST00000428680 LCE2BO14633 110 aa3.1□□□□□ -1.91
CNOT4-206ENST00000428680 KRTAP19-1Q8IUB9 90 aa3.1□□□□□ -1.91
CNOT4-206ENST00000428680 KRTAP12-3P60328 96 aa3.07□□□□□ -1.92
CNOT4-206ENST00000428680 MT1FP04733 61 aa3.06□□□□□ -1.92
CNOT4-206ENST00000428680 KRTAP19-8Q3LI54 63 aa3.02□□□□□ -1.93
CNOT4-206ENST00000428680 SPRR2GQ9BYE4 73 aa3.02□□□□□ -1.93
CNOT4-206ENST00000428680 KRTAP10-7P60409 375 aaPredicted RBP3□□□□□ -1.93
CNOT4-206ENST00000428680 KRTAP20-1Q3LI63 56 aa2.97□□□□□ -1.93
CNOT4-206ENST00000428680 KRTAP10-5P60370 271 aa2.97□□□□□ -1.93
CNOT4-206ENST00000428680 SPRR2EP22531 72 aa2.96□□□□□ -1.94
CNOT4-206ENST00000428680 SPRR2BP35325 72 aa2.96□□□□□ -1.94
CNOT4-206ENST00000428680 SPRR2AP35326 72 aa2.96□□□□□ -1.94
CNOT4-206ENST00000428680 LCE3AQ5TA76 89 aa2.94□□□□□ -1.94
CNOT4-206ENST00000428680 KRTAP2-3P0C7H8 128 aa2.92□□□□□ -1.94
CNOT4-206ENST00000428680 KRTAP2-4Q9BYR9 128 aa2.92□□□□□ -1.94
CNOT4-206ENST00000428680 SSPOA2VEC9 5147 aa2.88□□□□□ -1.95
CNOT4-206ENST00000428680 KRTAP5-9P26371 169 aa2.88□□□□□ -1.95
CNOT4-206ENST00000428680 SPRR2DP22532 72 aa2.87□□□□□ -1.95
CNOT4-206ENST00000428680 LCE1AQ5T7P2 110 aa2.85□□□□□ -1.95
CNOT4-206ENST00000428680 KRTAP23-1A1A580 65 aa2.82□□□□□ -1.96
CNOT4-206ENST00000428680 MT1BP07438 61 aa2.82□□□□□ -1.96
CNOT4-206ENST00000428680 SYNE1Q8NF91 8797 aaKnown RBP2.79□□□□□ -1.96
CNOT4-206ENST00000428680 KRTAP2-2Q9BYT5 123 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms