RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 FAM236CP0DP71 79 aa4.05□□□□□ -1.76
HMGA1P4-201ENST00000428643 TMEM258P61165 79 aa4.05□□□□□ -1.76
HMGA1P4-201ENST00000428643 COX6B2Q6YFQ2 88 aa4.05□□□□□ -1.76
HMGA1P4-201ENST00000428643 C20orf197Q8N268 126 aa4.05□□□□□ -1.76
HMGA1P4-201ENST00000428643 RBM12B-AS1Q9P1G2 102 aa4.05□□□□□ -1.76
HMGA1P4-201ENST00000428643 MUC17Q685J3 4493 aa4.04□□□□□ -1.76
HMGA1P4-201ENST00000428643 A0A0U1RQV1 116 aa4.04□□□□□ -1.76
HMGA1P4-201ENST00000428643 ATP5EP56381 51 aaPredicted RBP4.04□□□□□ -1.76
HMGA1P4-201ENST00000428643 SNURFQ9Y675 71 aa4.04□□□□□ -1.76
HMGA1P4-201ENST00000428643 C4orf26Q17RF5 130 aa4.03□□□□□ -1.76
HMGA1P4-201ENST00000428643 RPS28P62857 69 aaKnown RBP4.02□□□□□ -1.77
HMGA1P4-201ENST00000428643 KLKP1Q107X0 134 aa4.02□□□□□ -1.77
HMGA1P4-201ENST00000428643 LCE4AQ5TA78 99 aa4.02□□□□□ -1.77
HMGA1P4-201ENST00000428643 CCDC179H3BU77 68 aa4.01□□□□□ -1.77
HMGA1P4-201ENST00000428643 MPLKIPQ8TAP9 179 aa4.01□□□□□ -1.77
HMGA1P4-201ENST00000428643 LCE5AQ5TCM9 118 aa4□□□□□ -1.77
HMGA1P4-201ENST00000428643 KRTAP19-2Q3LHN2 52 aa3.97□□□□□ -1.77
HMGA1P4-201ENST00000428643 H1FX-AS1Q4G0G2 97 aa3.95□□□□□ -1.78
HMGA1P4-201ENST00000428643 CYSTM1Q9H1C7 97 aa3.95□□□□□ -1.78
HMGA1P4-201ENST00000428643 A8MUN3 132 aa3.93□□□□□ -1.78
HMGA1P4-201ENST00000428643 KRTAP3-1Q9BYR8 98 aa3.93□□□□□ -1.78
HMGA1P4-201ENST00000428643 H7BZZ5 65 aa3.92□□□□□ -1.78
HMGA1P4-201ENST00000428643 SPANXA2-OT1Q8N9U9 137 aa3.92□□□□□ -1.78
HMGA1P4-201ENST00000428643 DMAC1Q96GE9 116 aa3.92□□□□□ -1.78
HMGA1P4-201ENST00000428643 M0R2T5 61 aa3.9□□□□□ -1.79
HMGA1P4-201ENST00000428643 MT1HP80294 61 aa3.9□□□□□ -1.79
HMGA1P4-201ENST00000428643 SERP1Q9Y6X1 66 aa3.9□□□□□ -1.79
HMGA1P4-201ENST00000428643 S4R3F8 94 aa3.9□□□□□ -1.79
HMGA1P4-201ENST00000428643 ACYP2P14621 99 aa3.87□□□□□ -1.79
HMGA1P4-201ENST00000428643 LCA10Q71F78 164 aa3.86□□□□□ -1.79
HMGA1P4-201ENST00000428643 SMIM26A0A096LP01 95 aa3.85□□□□□ -1.79
HMGA1P4-201ENST00000428643 CHKB-CPT1BH3BT56 60 aa3.85□□□□□ -1.79
HMGA1P4-201ENST00000428643 V9GYY9 64 aa3.83□□□□□ -1.8
HMGA1P4-201ENST00000428643 CSAG1Q6PB30 78 aa3.82□□□□□ -1.8
HMGA1P4-201ENST00000428643 COA5Q86WW8 74 aa3.82□□□□□ -1.8
HMGA1P4-201ENST00000428643 FSIP2Q5CZC0 6907 aa3.81□□□□□ -1.8
HMGA1P4-201ENST00000428643 SPTSSBQ8NFR3 76 aa3.79□□□□□ -1.8
HMGA1P4-201ENST00000428643 SVIPQ8NHG7 77 aa3.79□□□□□ -1.8
HMGA1P4-201ENST00000428643 KRTAP10-6P60371 365 aaPredicted RBP3.78□□□□□ -1.8
HMGA1P4-201ENST00000428643 CRCT1Q9UGL9 99 aa3.76□□□□□ -1.81
HMGA1P4-201ENST00000428643 FLGP20930 4061 aaPredicted RBP3.75□□□□□ -1.81
HMGA1P4-201ENST00000428643 MT2AP02795 61 aa3.72□□□□□ -1.81
HMGA1P4-201ENST00000428643 KRTAP9-7A8MTY7 169 aa3.71□□□□□ -1.82
HMGA1P4-201ENST00000428643 Q1T7F1 81 aa3.71□□□□□ -1.82
HMGA1P4-201ENST00000428643 KRTAP10-10P60014 251 aa3.7□□□□□ -1.82
HMGA1P4-201ENST00000428643 ADM2Q7Z4H4 148 aa3.7□□□□□ -1.82
HMGA1P4-201ENST00000428643 H0YAA0 97 aa3.69□□□□□ -1.82
HMGA1P4-201ENST00000428643 MT1FP04733 61 aa3.69□□□□□ -1.82
HMGA1P4-201ENST00000428643 PRO0628Q9UI54 55 aa3.66□□□□□ -1.82
HMGA1P4-201ENST00000428643 SEC61GP60059 68 aa3.65□□□□□ -1.83
HMGA1P4-201ENST00000428643 P0C880 135 aa3.64□□□□□ -1.83
HMGA1P4-201ENST00000428643 KRTAP9-3Q9BYQ3 159 aa3.64□□□□□ -1.83
HMGA1P4-201ENST00000428643 A0A1B0GU69 56 aa3.63□□□□□ -1.83
HMGA1P4-201ENST00000428643 PRR15LQ9BU68 103 aa3.62□□□□□ -1.83
HMGA1P4-201ENST00000428643 CRIPTQ9P021 101 aa3.61□□□□□ -1.83
HMGA1P4-201ENST00000428643 LINC01558Q9Y6Z2 57 aa3.59□□□□□ -1.83
HMGA1P4-201ENST00000428643 R4GN34 69 aa3.59□□□□□ -1.83
HMGA1P4-201ENST00000428643 M0QZ58 72 aa3.58□□□□□ -1.84
HMGA1P4-201ENST00000428643 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.57□□□□□ -1.84
HMGA1P4-201ENST00000428643 BRK1Q8WUW1 75 aa3.57□□□□□ -1.84
HMGA1P4-201ENST00000428643 SSPOA2VEC9 5147 aa3.56□□□□□ -1.84
HMGA1P4-201ENST00000428643 USH2AO75445 5202 aa3.55□□□□□ -1.84
HMGA1P4-201ENST00000428643 SPRR2GQ9BYE4 73 aa3.55□□□□□ -1.84
HMGA1P4-201ENST00000428643 A0A1B0GU33 70 aa3.54□□□□□ -1.84
HMGA1P4-201ENST00000428643 PSPHP1O15172 72 aa3.54□□□□□ -1.84
HMGA1P4-201ENST00000428643 LINC01554Q52M75 96 aa3.53□□□□□ -1.84
HMGA1P4-201ENST00000428643 A6NED7 52 aa3.5□□□□□ -1.85
HMGA1P4-201ENST00000428643 KRTAP13-4Q3LI77 160 aa3.5□□□□□ -1.85
HMGA1P4-201ENST00000428643 Q5VV11 94 aa3.5□□□□□ -1.85
HMGA1P4-201ENST00000428643 CDC42SE1Q9NRR8 79 aa3.5□□□□□ -1.85
HMGA1P4-201ENST00000428643 SPATA8Q6RVD6 105 aa3.49□□□□□ -1.85
HMGA1P4-201ENST00000428643 KRTAP19-8Q3LI54 63 aa3.48□□□□□ -1.85
HMGA1P4-201ENST00000428643 FCGBPQ9Y6R7 5405 aaPredicted RBP3.48□□□□□ -1.85
HMGA1P4-201ENST00000428643 A0A0D9SG42 100 aa3.47□□□□□ -1.85
HMGA1P4-201ENST00000428643 UQCR11O14957 56 aa3.47□□□□□ -1.85
HMGA1P4-201ENST00000428643 MT1BP07438 61 aa3.44□□□□□ -1.86
HMGA1P4-201ENST00000428643 A8MU10 97 aa3.43□□□□□ -1.86
HMGA1P4-201ENST00000428643 MIR22HGQ0VDD5 57 aa3.43□□□□□ -1.86
HMGA1P4-201ENST00000428643 PLAC4Q8WY50 150 aa3.43□□□□□ -1.86
HMGA1P4-201ENST00000428643 PMAIP1Q13794 54 aa3.42□□□□□ -1.86
HMGA1P4-201ENST00000428643 A6NN06 94 aa3.41□□□□□ -1.86
HMGA1P4-201ENST00000428643 SPINT4Q6UDR6 99 aa3.4□□□□□ -1.87
HMGA1P4-201ENST00000428643 SYNE2Q8WXH0 6885 aaKnown RBP3.39□□□□□ -1.87
HMGA1P4-201ENST00000428643 MACF1Q9UPN3 7388 aaKnown RBP3.38□□□□□ -1.87
HMGA1P4-201ENST00000428643 KRTAP12-1P59990 96 aa3.37□□□□□ -1.87
HMGA1P4-201ENST00000428643 CAMK2N1Q7Z7J9 78 aa3.37□□□□□ -1.87
HMGA1P4-201ENST00000428643 K7ERS5 55 aa3.36□□□□□ -1.87
HMGA1P4-201ENST00000428643 KRTAP12-2P59991 146 aa3.36□□□□□ -1.87
HMGA1P4-201ENST00000428643 KTN1-AS1Q86SY8 53 aa3.36□□□□□ -1.87
HMGA1P4-201ENST00000428643 KRTAP19-6Q3LI70 58 aa3.35□□□□□ -1.87
HMGA1P4-201ENST00000428643 PRO2289Q9P1D8 64 aa3.33□□□□□ -1.88
HMGA1P4-201ENST00000428643 KRTAP10-5P60370 271 aa3.31□□□□□ -1.88
HMGA1P4-201ENST00000428643 MT1XP80297 61 aa3.3□□□□□ -1.88
HMGA1P4-201ENST00000428643 KRTAP6-3Q3LI67 103 aa3.24□□□□□ -1.89
HMGA1P4-201ENST00000428643 KRTAP5-9P26371 169 aa3.22□□□□□ -1.89
HMGA1P4-201ENST00000428643 NEBP20929 6669 aa3.22□□□□□ -1.89
HMGA1P4-201ENST00000428643 C10orf95Q9H7T3 257 aa3.19□□□□□ -1.9
HMGA1P4-201ENST00000428643 MUC12Q9UKN1 5478 aa3.19□□□□□ -1.9
HMGA1P4-201ENST00000428643 KRTAP10-7P60409 375 aaPredicted RBP3.16□□□□□ -1.9
HMGA1P4-201ENST00000428643 TNP1P09430 55 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms