RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 HRES1P13985 223 aa6.37□□□□□ -1.39
LINC00339-202ENST00000416769 TRAV22A0A0B4J277 110 aa6.36□□□□□ -1.39
LINC00339-202ENST00000416769 MPLKIPQ8TAP9 179 aa6.36□□□□□ -1.39
LINC00339-202ENST00000416769 SMIM20Q8N5G0 67 aa6.35□□□□□ -1.39
LINC00339-202ENST00000416769 C5orf47Q569G3 176 aa6.34□□□□□ -1.39
LINC00339-202ENST00000416769 IGKV2-30P06310 120 aa6.33□□□□□ -1.4
LINC00339-202ENST00000416769 C7orf65Q6ZTY9 151 aa6.33□□□□□ -1.4
LINC00339-202ENST00000416769 IGKV2D-30A0A075B6S6 120 aa6.32□□□□□ -1.4
LINC00339-202ENST00000416769 H0Y9P7 68 aa6.32□□□□□ -1.4
LINC00339-202ENST00000416769 ATOX1O00244 68 aa6.32□□□□□ -1.4
LINC00339-202ENST00000416769 KRTAP19-6Q3LI70 58 aa6.31□□□□□ -1.4
LINC00339-202ENST00000416769 TRAV7A0A075B6U4 112 aa6.3□□□□□ -1.4
LINC00339-202ENST00000416769 MP68P56378 58 aa6.3□□□□□ -1.4
LINC00339-202ENST00000416769 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
LINC00339-202ENST00000416769 H3BPC8 53 aa6.28□□□□□ -1.4
LINC00339-202ENST00000416769 CYP4F30PQ9H0H9 118 aa6.28□□□□□ -1.4
LINC00339-202ENST00000416769 C1orf64Q8NEQ6 169 aa6.27□□□□□ -1.41
LINC00339-202ENST00000416769 KRTAP4-2Q9BYR5 136 aa6.27□□□□□ -1.41
LINC00339-202ENST00000416769 RBM12B-AS1Q9P1G2 102 aa6.27□□□□□ -1.41
LINC00339-202ENST00000416769 LINC00208Q96KT6 92 aa6.26□□□□□ -1.41
LINC00339-202ENST00000416769 KRTAP19-4Q3LI73 84 aa6.25□□□□□ -1.41
LINC00339-202ENST00000416769 LCE4AQ5TA78 99 aa6.23□□□□□ -1.41
LINC00339-202ENST00000416769 SERP2Q8N6R1 65 aa6.23□□□□□ -1.41
LINC00339-202ENST00000416769 A0A0A0MQY5 61 aa6.22□□□□□ -1.41
LINC00339-202ENST00000416769 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
LINC00339-202ENST00000416769 KRTAP6-3Q3LI67 103 aa6.19□□□□□ -1.42
LINC00339-202ENST00000416769 C4orf26Q17RF5 130 aa6.18□□□□□ -1.42
LINC00339-202ENST00000416769 COX7CP15954 63 aa6.16□□□□□ -1.42
LINC00339-202ENST00000416769 KLKP1Q107X0 134 aa6.16□□□□□ -1.42
LINC00339-202ENST00000416769 KRTAP4-11Q9BYQ6 195 aa6.16□□□□□ -1.42
LINC00339-202ENST00000416769 NEBP20929 6669 aa6.16□□□□□ -1.42
LINC00339-202ENST00000416769 C20orf197Q8N268 126 aa6.13□□□□□ -1.43
LINC00339-202ENST00000416769 H1FX-AS1Q4G0G2 97 aa6.12□□□□□ -1.43
LINC00339-202ENST00000416769 ANAPC13Q9BS18 74 aa6.12□□□□□ -1.43
LINC00339-202ENST00000416769 KRTAP3-1Q9BYR8 98 aa6.12□□□□□ -1.43
LINC00339-202ENST00000416769 SNURFQ9Y675 71 aa6.11□□□□□ -1.43
LINC00339-202ENST00000416769 A8MUN3 132 aa6.06□□□□□ -1.44
LINC00339-202ENST00000416769 MUC12Q9UKN1 5478 aa6.05□□□□□ -1.44
LINC00339-202ENST00000416769 LCE5AQ5TCM9 118 aa6.03□□□□□ -1.44
LINC00339-202ENST00000416769 NDUFC1O43677 76 aa6.02□□□□□ -1.45
LINC00339-202ENST00000416769 SPANXA2-OT1Q8N9U9 137 aa6.01□□□□□ -1.45
LINC00339-202ENST00000416769 DMAC1Q96GE9 116 aa6□□□□□ -1.45
LINC00339-202ENST00000416769 CCDC179H3BU77 68 aa5.99□□□□□ -1.45
LINC00339-202ENST00000416769 S4R3F8 94 aa5.98□□□□□ -1.45
LINC00339-202ENST00000416769 H7BZZ5 65 aa5.96□□□□□ -1.46
LINC00339-202ENST00000416769 ACYP2P14621 99 aa5.96□□□□□ -1.46
LINC00339-202ENST00000416769 CYSTM1Q9H1C7 97 aa5.96□□□□□ -1.46
LINC00339-202ENST00000416769 LCA10Q71F78 164 aa5.95□□□□□ -1.46
LINC00339-202ENST00000416769 KRTAP20-1Q3LI63 56 aa5.91□□□□□ -1.46
LINC00339-202ENST00000416769 CSAG1Q6PB30 78 aa5.91□□□□□ -1.46
LINC00339-202ENST00000416769 MT1BP07438 61 aa5.9□□□□□ -1.46
LINC00339-202ENST00000416769 A6NN06 94 aa5.88□□□□□ -1.47
LINC00339-202ENST00000416769 KMT2DO14686 5537 aa5.83□□□□□ -1.48
LINC00339-202ENST00000416769 CHKB-CPT1BH3BT56 60 aa5.82□□□□□ -1.48
LINC00339-202ENST00000416769 ATP5EP56381 51 aaPredicted RBP5.82□□□□□ -1.48
LINC00339-202ENST00000416769 TMEM258P61165 79 aa5.8□□□□□ -1.48
LINC00339-202ENST00000416769 SPTSSBQ8NFR3 76 aa5.8□□□□□ -1.48
LINC00339-202ENST00000416769 MDN1Q9NU22 5596 aa5.8□□□□□ -1.48
LINC00339-202ENST00000416769 COA5Q86WW8 74 aa5.79□□□□□ -1.48
LINC00339-202ENST00000416769 KRTAP5-9P26371 169 aa5.78□□□□□ -1.48
LINC00339-202ENST00000416769 KRTAP10-5P60370 271 aa5.77□□□□□ -1.49
LINC00339-202ENST00000416769 KRTAP19-8Q3LI54 63 aa5.77□□□□□ -1.49
LINC00339-202ENST00000416769 H0YAA0 97 aa5.76□□□□□ -1.49
LINC00339-202ENST00000416769 Q5VV11 94 aa5.76□□□□□ -1.49
LINC00339-202ENST00000416769 SPRR2GQ9BYE4 73 aa5.73□□□□□ -1.49
LINC00339-202ENST00000416769 ADM2Q7Z4H4 148 aa5.68□□□□□ -1.5
LINC00339-202ENST00000416769 KRTAP5-3Q6L8H2 238 aa5.64□□□□□ -1.51
LINC00339-202ENST00000416769 KRTAP2-3P0C7H8 128 aa5.63□□□□□ -1.51
LINC00339-202ENST00000416769 KRTAP2-4Q9BYR9 128 aa5.63□□□□□ -1.51
LINC00339-202ENST00000416769 CRIPTQ9P021 101 aa5.63□□□□□ -1.51
LINC00339-202ENST00000416769 SERP1Q9Y6X1 66 aa5.63□□□□□ -1.51
LINC00339-202ENST00000416769 P0C880 135 aa5.6□□□□□ -1.51
LINC00339-202ENST00000416769 SEC61GP60059 68 aa5.57□□□□□ -1.52
LINC00339-202ENST00000416769 SPRR2EP22531 72 aa5.56□□□□□ -1.52
LINC00339-202ENST00000416769 SPRR2BP35325 72 aa5.56□□□□□ -1.52
LINC00339-202ENST00000416769 SPRR2AP35326 72 aa5.56□□□□□ -1.52
LINC00339-202ENST00000416769 SPRR2FQ96RM1 72 aa5.56□□□□□ -1.52
LINC00339-202ENST00000416769 RPS28P62857 69 aaKnown RBP5.52□□□□□ -1.53
LINC00339-202ENST00000416769 LINC01558Q9Y6Z2 57 aa5.51□□□□□ -1.53
LINC00339-202ENST00000416769 R4GN34 69 aa5.51□□□□□ -1.53
LINC00339-202ENST00000416769 A0A1B0GU69 56 aa5.49□□□□□ -1.53
LINC00339-202ENST00000416769 M0QZ58 72 aa5.47□□□□□ -1.53
LINC00339-202ENST00000416769 LCE1AQ5T7P2 110 aa5.46□□□□□ -1.54
LINC00339-202ENST00000416769 MT1XP80297 61 aa5.45□□□□□ -1.54
LINC00339-202ENST00000416769 PRR15LQ9BU68 103 aa5.45□□□□□ -1.54
LINC00339-202ENST00000416769 SMIM26A0A096LP01 95 aa5.44□□□□□ -1.54
LINC00339-202ENST00000416769 A0A1B0GU33 70 aa5.44□□□□□ -1.54
LINC00339-202ENST00000416769 V9GYY9 64 aa5.44□□□□□ -1.54
LINC00339-202ENST00000416769 KRTAP2-2Q9BYT5 123 aa5.43□□□□□ -1.54
LINC00339-202ENST00000416769 KRTAP2-1Q9BYU5 128 aa5.43□□□□□ -1.54
LINC00339-202ENST00000416769 Q1T7F1 81 aa5.42□□□□□ -1.54
LINC00339-202ENST00000416769 KRTAP8-1Q8IUC2 63 aa5.41□□□□□ -1.54
LINC00339-202ENST00000416769 KRTAP13-4Q3LI77 160 aa5.38□□□□□ -1.55
LINC00339-202ENST00000416769 SPRR2DP22532 72 aa5.37□□□□□ -1.55
LINC00339-202ENST00000416769 LINC01554Q52M75 96 aa5.35□□□□□ -1.55
LINC00339-202ENST00000416769 SPATA8Q6RVD6 105 aa5.33□□□□□ -1.56
LINC00339-202ENST00000416769 PLAC4Q8WY50 150 aa5.32□□□□□ -1.56
LINC00339-202ENST00000416769 PRO2289Q9P1D8 64 aa5.3□□□□□ -1.56
LINC00339-202ENST00000416769 UQCR11O14957 56 aa5.29□□□□□ -1.56
LINC00339-202ENST00000416769 PSPHP1O15172 72 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 172.3 ms