RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 CSAG1Q6PB30 78 aa13.91□□□□□ -0.18
USP42-202ENST00000404008 KRTAP9-6A0A140TA67 174 aa13.89□□□□□ -0.19
USP42-202ENST00000404008 MT1FP04733 61 aa13.88□□□□□ -0.19
USP42-202ENST00000404008 LCE2DQ5TA82 110 aaPredicted RBP13.87□□□□□ -0.19
USP42-202ENST00000404008 ANAPC13Q9BS18 74 aa13.84□□□□□ -0.19
USP42-202ENST00000404008 KRTAP10-10P60014 251 aa13.81□□□□□ -0.2
USP42-202ENST00000404008 NDUFC1O43677 76 aa13.79□□□□□ -0.2
USP42-202ENST00000404008 SPANXA2-OT1Q8N9U9 137 aa13.76□□□□□ -0.21
USP42-202ENST00000404008 ACYP2P14621 99 aa13.71□□□□□ -0.21
USP42-202ENST00000404008 CYSTM1Q9H1C7 97 aa13.66□□□□□ -0.22
USP42-202ENST00000404008 KRTAP9-3Q9BYQ3 159 aa13.64□□□□□ -0.23
USP42-202ENST00000404008 H7BZZ5 65 aa13.6□□□□□ -0.23
USP42-202ENST00000404008 CCDC179H3BU77 68 aa13.56□□□□□ -0.24
USP42-202ENST00000404008 H0YAA0 97 aa13.51□□□□□ -0.25
USP42-202ENST00000404008 CHKB-CPT1BH3BT56 60 aa13.45□□□□□ -0.26
USP42-202ENST00000404008 LCE2BO14633 110 aa13.42□□□□□ -0.26
USP42-202ENST00000404008 SPTSSBQ8NFR3 76 aa13.4□□□□□ -0.26
USP42-202ENST00000404008 ADM2Q7Z4H4 148 aa13.37□□□□□ -0.27
USP42-202ENST00000404008 FSIP2Q5CZC0 6907 aa13.35□□□□□ -0.27
USP42-202ENST00000404008 COA5Q86WW8 74 aa13.33□□□□□ -0.27
USP42-202ENST00000404008 USH2AO75445 5202 aa13.32□□□□□ -0.28
USP42-202ENST00000404008 KRTAP19-1Q8IUB9 90 aa13.29□□□□□ -0.28
USP42-202ENST00000404008 CRIPTQ9P021 101 aa13.26□□□□□ -0.29
USP42-202ENST00000404008 CRCT1Q9UGL9 99 aa13.26□□□□□ -0.29
USP42-202ENST00000404008 SPRR2GQ9BYE4 73 aa13.23□□□□□ -0.29
USP42-202ENST00000404008 KRTAP3-2Q9BYR7 98 aa13.2□□□□□ -0.3
USP42-202ENST00000404008 P0C880 135 aa13.18□□□□□ -0.3
USP42-202ENST00000404008 ATP5EP56381 51 aaPredicted RBP13.16□□□□□ -0.3
USP42-202ENST00000404008 TMEM258P61165 79 aa13.09□□□□□ -0.31
USP42-202ENST00000404008 SSPOA2VEC9 5147 aa13.05□□□□□ -0.32
USP42-202ENST00000404008 KRTAP19-8Q3LI54 63 aa13.03□□□□□ -0.32
USP42-202ENST00000404008 R4GN34 69 aa12.97□□□□□ -0.33
USP42-202ENST00000404008 Q5VV11 94 aa12.94□□□□□ -0.34
USP42-202ENST00000404008 MT1BP07438 61 aa12.93□□□□□ -0.34
USP42-202ENST00000404008 M0QZ58 72 aa12.9□□□□□ -0.34
USP42-202ENST00000404008 KRTAP19-6Q3LI70 58 aa12.82□□□□□ -0.36
USP42-202ENST00000404008 PCP4P48539 62 aa12.81□□□□□ -0.36
USP42-202ENST00000404008 SEC61GP60059 68 aa12.81□□□□□ -0.36
USP42-202ENST00000404008 SERP1Q9Y6X1 66 aa12.76□□□□□ -0.37
USP42-202ENST00000404008 LINC01554Q52M75 96 aa12.67□□□□□ -0.38
USP42-202ENST00000404008 FCGBPQ9Y6R7 5405 aaPredicted RBP12.66□□□□□ -0.38
USP42-202ENST00000404008 A0A1B0GU69 56 aa12.63□□□□□ -0.39
USP42-202ENST00000404008 KRTAP13-4Q3LI77 160 aa12.61□□□□□ -0.39
USP42-202ENST00000404008 PLAC4Q8WY50 150 aa12.56□□□□□ -0.4
USP42-202ENST00000404008 A0A1B0GU33 70 aa12.54□□□□□ -0.4
USP42-202ENST00000404008 LINC01558Q9Y6Z2 57 aa12.52□□□□□ -0.41
USP42-202ENST00000404008 A6NN06 94 aa12.48□□□□□ -0.41
USP42-202ENST00000404008 KRTAP10-5P60370 271 aa12.48□□□□□ -0.41
USP42-202ENST00000404008 PRR15LQ9BU68 103 aa12.45□□□□□ -0.42
USP42-202ENST00000404008 KRTAP9-7A8MTY7 169 aa12.43□□□□□ -0.42
USP42-202ENST00000404008 SPATA8Q6RVD6 105 aa12.41□□□□□ -0.42
USP42-202ENST00000404008 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.39□□□□□ -0.43
USP42-202ENST00000404008 MT1XP80297 61 aa12.3□□□□□ -0.44
USP42-202ENST00000404008 A0A0D9SG42 100 aa12.27□□□□□ -0.45
USP42-202ENST00000404008 PRO2289Q9P1D8 64 aa12.27□□□□□ -0.45
USP42-202ENST00000404008 RPS28P62857 69 aaKnown RBP12.21□□□□□ -0.45
USP42-202ENST00000404008 V9GYY9 64 aa12.21□□□□□ -0.45
USP42-202ENST00000404008 Q1T7F1 81 aa12.2□□□□□ -0.46
USP42-202ENST00000404008 SMIM26A0A096LP01 95 aa12.19□□□□□ -0.46
USP42-202ENST00000404008 MACF1Q9UPN3 7388 aaKnown RBP12.14□□□□□ -0.47
USP42-202ENST00000404008 A8MU10 97 aa12.09□□□□□ -0.47
USP42-202ENST00000404008 KRTAP12-1P59990 96 aa12.07□□□□□ -0.48
USP42-202ENST00000404008 UQCR11O14957 56 aa12.06□□□□□ -0.48
USP42-202ENST00000404008 PSPHP1O15172 72 aa12.05□□□□□ -0.48
USP42-202ENST00000404008 SPINT4Q6UDR6 99 aa12.05□□□□□ -0.48
USP42-202ENST00000404008 CAMK2N1Q7Z7J9 78 aa12.03□□□□□ -0.48
USP42-202ENST00000404008 KRTAP12-2P59991 146 aa12□□□□□ -0.49
USP42-202ENST00000404008 SYNE2Q8WXH0 6885 aaKnown RBP11.89□□□□□ -0.51
USP42-202ENST00000404008 MIR22HGQ0VDD5 57 aa11.86□□□□□ -0.51
USP42-202ENST00000404008 KRTAP10-7P60409 375 aaPredicted RBP11.75□□□□□ -0.53
USP42-202ENST00000404008 KRTAP10-12P60413 245 aa11.69□□□□□ -0.54
USP42-202ENST00000404008 KRTAP6-3Q3LI67 103 aa11.69□□□□□ -0.54
USP42-202ENST00000404008 A6NED7 52 aa11.67□□□□□ -0.54
USP42-202ENST00000404008 KMT2DO14686 5537 aa11.66□□□□□ -0.54
USP42-202ENST00000404008 KRTAP4-8A0A0G2JLE6 195 aa11.53□□□□□ -0.56
USP42-202ENST00000404008 KRTAP4-8Q9BYQ9 185 aa11.53□□□□□ -0.56
USP42-202ENST00000404008 KRTAP5-9P26371 169 aa11.48□□□□□ -0.57
USP42-202ENST00000404008 KRTAP8-1Q8IUC2 63 aa11.48□□□□□ -0.57
USP42-202ENST00000404008 K7ERS5 55 aa11.47□□□□□ -0.57
USP42-202ENST00000404008 C10orf95Q9H7T3 257 aa11.47□□□□□ -0.57
USP42-202ENST00000404008 CDC42SE1Q9NRR8 79 aa11.32□□□□□ -0.6
USP42-202ENST00000404008 SPRR2FQ96RM1 72 aa11.29□□□□□ -0.6
USP42-202ENST00000404008 TNP1P09430 55 aa11.28□□□□□ -0.6
USP42-202ENST00000404008 MUC12Q9UKN1 5478 aa11.26□□□□□ -0.61
USP42-202ENST00000404008 NEBP20929 6669 aa11.17□□□□□ -0.62
USP42-202ENST00000404008 MDN1Q9NU22 5596 aa11.1□□□□□ -0.63
USP42-202ENST00000404008 KRTAP25-1Q3LHN0 102 aa11.01□□□□□ -0.65
USP42-202ENST00000404008 LCE3AQ5TA76 89 aa11.01□□□□□ -0.65
USP42-202ENST00000404008 KRTAP19-7Q3SYF9 63 aa10.99□□□□□ -0.65
USP42-202ENST00000404008 SPRR2EP22531 72 aa10.96□□□□□ -0.65
USP42-202ENST00000404008 SPRR2BP35325 72 aa10.96□□□□□ -0.65
USP42-202ENST00000404008 SPRR2AP35326 72 aa10.96□□□□□ -0.65
USP42-202ENST00000404008 LCE1AQ5T7P2 110 aa10.92□□□□□ -0.66
USP42-202ENST00000404008 KRTAP19-5Q3LI72 72 aa10.89□□□□□ -0.67
USP42-202ENST00000404008 ROMO1P60602 79 aa10.86□□□□□ -0.67
USP42-202ENST00000404008 MT1EP04732 61 aa10.85□□□□□ -0.67
USP42-202ENST00000404008 BRK1Q8WUW1 75 aa10.84□□□□□ -0.67
USP42-202ENST00000404008 KRTAP20-1Q3LI63 56 aa10.83□□□□□ -0.68
USP42-202ENST00000404008 KRTAP23-1A1A580 65 aa10.65□□□□□ -0.71
USP42-202ENST00000404008 KRTAP19-3Q7Z4W3 81 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 234.5 ms