RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 SPANXA2-OT1Q8N9U9 137 aa11.4□□□□□ -0.58
TSPAN4-203ENST00000397397 LCE2DQ5TA82 110 aaPredicted RBP11.38□□□□□ -0.59
TSPAN4-203ENST00000397397 KRTAP9-6A0A140TA67 174 aa11.35□□□□□ -0.59
TSPAN4-203ENST00000397397 H7BZZ5 65 aa11.35□□□□□ -0.59
TSPAN4-203ENST00000397397 ACYP2P14621 99 aa11.33□□□□□ -0.6
TSPAN4-203ENST00000397397 KRTAP3-3Q9BYR6 98 aa11.3□□□□□ -0.6
TSPAN4-203ENST00000397397 CSAG1Q6PB30 78 aa11.29□□□□□ -0.6
TSPAN4-203ENST00000397397 KRTAP9-8Q9BYQ0 159 aa11.21□□□□□ -0.61
TSPAN4-203ENST00000397397 CHKB-CPT1BH3BT56 60 aa11.15□□□□□ -0.62
TSPAN4-203ENST00000397397 MT2AP02795 61 aa11.14□□□□□ -0.63
TSPAN4-203ENST00000397397 COA5Q86WW8 74 aa11.07□□□□□ -0.64
TSPAN4-203ENST00000397397 FSIP2Q5CZC0 6907 aa11.06□□□□□ -0.64
TSPAN4-203ENST00000397397 MT1FP04733 61 aa11.06□□□□□ -0.64
TSPAN4-203ENST00000397397 KRTAP10-10P60014 251 aa11.06□□□□□ -0.64
TSPAN4-203ENST00000397397 SPTSSBQ8NFR3 76 aa11.05□□□□□ -0.64
TSPAN4-203ENST00000397397 ATP5EP56381 51 aaPredicted RBP11.04□□□□□ -0.64
TSPAN4-203ENST00000397397 CRCT1Q9UGL9 99 aa11.03□□□□□ -0.64
TSPAN4-203ENST00000397397 PCP4P48539 62 aa11.01□□□□□ -0.65
TSPAN4-203ENST00000397397 TMEM258P61165 79 aa11.01□□□□□ -0.65
TSPAN4-203ENST00000397397 H0YAA0 97 aa10.94□□□□□ -0.66
TSPAN4-203ENST00000397397 ADM2Q7Z4H4 148 aa10.9□□□□□ -0.66
TSPAN4-203ENST00000397397 KRTAP9-3Q9BYQ3 159 aa10.84□□□□□ -0.67
TSPAN4-203ENST00000397397 KRTAP3-2Q9BYR7 98 aa10.75□□□□□ -0.69
TSPAN4-203ENST00000397397 P0C880 135 aa10.74□□□□□ -0.69
TSPAN4-203ENST00000397397 USH2AO75445 5202 aa10.7□□□□□ -0.7
TSPAN4-203ENST00000397397 CRIPTQ9P021 101 aa10.7□□□□□ -0.7
TSPAN4-203ENST00000397397 SERP1Q9Y6X1 66 aa10.68□□□□□ -0.7
TSPAN4-203ENST00000397397 LCE2BO14633 110 aa10.66□□□□□ -0.7
TSPAN4-203ENST00000397397 KRTAP19-1Q8IUB9 90 aa10.63□□□□□ -0.71
TSPAN4-203ENST00000397397 SEC61GP60059 68 aa10.61□□□□□ -0.71
TSPAN4-203ENST00000397397 SPRR2GQ9BYE4 73 aa10.6□□□□□ -0.71
TSPAN4-203ENST00000397397 SSPOA2VEC9 5147 aa10.6□□□□□ -0.71
TSPAN4-203ENST00000397397 R4GN34 69 aa10.55□□□□□ -0.72
TSPAN4-203ENST00000397397 M0QZ58 72 aa10.51□□□□□ -0.73
TSPAN4-203ENST00000397397 A0A1B0GU69 56 aa10.49□□□□□ -0.73
TSPAN4-203ENST00000397397 LINC01558Q9Y6Z2 57 aa10.44□□□□□ -0.74
TSPAN4-203ENST00000397397 KRTAP19-8Q3LI54 63 aa10.42□□□□□ -0.74
TSPAN4-203ENST00000397397 Q5VV11 94 aa10.39□□□□□ -0.75
TSPAN4-203ENST00000397397 PRR15LQ9BU68 103 aa10.38□□□□□ -0.75
TSPAN4-203ENST00000397397 RPS28P62857 69 aaKnown RBP10.36□□□□□ -0.75
TSPAN4-203ENST00000397397 A0A1B0GU33 70 aa10.35□□□□□ -0.75
TSPAN4-203ENST00000397397 MT1BP07438 61 aa10.33□□□□□ -0.76
TSPAN4-203ENST00000397397 LINC01554Q52M75 96 aa10.33□□□□□ -0.76
TSPAN4-203ENST00000397397 SMIM26A0A096LP01 95 aa10.32□□□□□ -0.76
TSPAN4-203ENST00000397397 KRTAP13-4Q3LI77 160 aa10.32□□□□□ -0.76
TSPAN4-203ENST00000397397 FCGBPQ9Y6R7 5405 aaPredicted RBP10.3□□□□□ -0.76
TSPAN4-203ENST00000397397 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.28□□□□□ -0.76
TSPAN4-203ENST00000397397 V9GYY9 64 aa10.28□□□□□ -0.76
TSPAN4-203ENST00000397397 Q1T7F1 81 aa10.24□□□□□ -0.77
TSPAN4-203ENST00000397397 KRTAP19-6Q3LI70 58 aa10.22□□□□□ -0.77
TSPAN4-203ENST00000397397 SPATA8Q6RVD6 105 aa10.22□□□□□ -0.77
TSPAN4-203ENST00000397397 PLAC4Q8WY50 150 aa10.17□□□□□ -0.78
TSPAN4-203ENST00000397397 KRTAP9-7A8MTY7 169 aa10.14□□□□□ -0.79
TSPAN4-203ENST00000397397 PSPHP1O15172 72 aa10.13□□□□□ -0.79
TSPAN4-203ENST00000397397 A0A0D9SG42 100 aa10.11□□□□□ -0.79
TSPAN4-203ENST00000397397 A6NN06 94 aa10.08□□□□□ -0.8
TSPAN4-203ENST00000397397 UQCR11O14957 56 aa10.05□□□□□ -0.8
TSPAN4-203ENST00000397397 MACF1Q9UPN3 7388 aaKnown RBP10.03□□□□□ -0.8
TSPAN4-203ENST00000397397 A8MU10 97 aa9.99□□□□□ -0.81
TSPAN4-203ENST00000397397 KRTAP10-5P60370 271 aa9.95□□□□□ -0.82
TSPAN4-203ENST00000397397 SPINT4Q6UDR6 99 aa9.92□□□□□ -0.82
TSPAN4-203ENST00000397397 MIR22HGQ0VDD5 57 aa9.9□□□□□ -0.83
TSPAN4-203ENST00000397397 KRTAP12-1P59990 96 aa9.89□□□□□ -0.83
TSPAN4-203ENST00000397397 MT1XP80297 61 aa9.87□□□□□ -0.83
TSPAN4-203ENST00000397397 SYNE2Q8WXH0 6885 aaKnown RBP9.87□□□□□ -0.83
TSPAN4-203ENST00000397397 PRO2289Q9P1D8 64 aa9.86□□□□□ -0.83
TSPAN4-203ENST00000397397 A6NED7 52 aa9.83□□□□□ -0.84
TSPAN4-203ENST00000397397 KRTAP12-2P59991 146 aa9.83□□□□□ -0.84
TSPAN4-203ENST00000397397 CAMK2N1Q7Z7J9 78 aa9.82□□□□□ -0.84
TSPAN4-203ENST00000397397 KRTAP6-3Q3LI67 103 aa9.63□□□□□ -0.87
TSPAN4-203ENST00000397397 K7ERS5 55 aa9.57□□□□□ -0.88
TSPAN4-203ENST00000397397 CDC42SE1Q9NRR8 79 aa9.54□□□□□ -0.88
TSPAN4-203ENST00000397397 KRTAP10-7P60409 375 aaPredicted RBP9.44□□□□□ -0.9
TSPAN4-203ENST00000397397 C10orf95Q9H7T3 257 aa9.4□□□□□ -0.9
TSPAN4-203ENST00000397397 KRTAP10-12P60413 245 aa9.37□□□□□ -0.91
TSPAN4-203ENST00000397397 NEBP20929 6669 aa9.27□□□□□ -0.93
TSPAN4-203ENST00000397397 BRK1Q8WUW1 75 aa9.27□□□□□ -0.93
TSPAN4-203ENST00000397397 MUC12Q9UKN1 5478 aa9.25□□□□□ -0.93
TSPAN4-203ENST00000397397 KRTAP5-9P26371 169 aa9.24□□□□□ -0.93
TSPAN4-203ENST00000397397 KMT2DO14686 5537 aa9.24□□□□□ -0.93
TSPAN4-203ENST00000397397 TNP1P09430 55 aa9.23□□□□□ -0.93
TSPAN4-203ENST00000397397 KRTAP4-8A0A0G2JLE6 195 aa9.22□□□□□ -0.93
TSPAN4-203ENST00000397397 KRTAP4-8Q9BYQ9 185 aa9.22□□□□□ -0.93
TSPAN4-203ENST00000397397 KRTAP8-1Q8IUC2 63 aa9.16□□□□□ -0.94
TSPAN4-203ENST00000397397 ROMO1P60602 79 aa9.06□□□□□ -0.96
TSPAN4-203ENST00000397397 KRTAP25-1Q3LHN0 102 aa9.06□□□□□ -0.96
TSPAN4-203ENST00000397397 SPRR2FQ96RM1 72 aa9□□□□□ -0.97
TSPAN4-203ENST00000397397 MDN1Q9NU22 5596 aa8.99□□□□□ -0.97
TSPAN4-203ENST00000397397 LCE3AQ5TA76 89 aa8.95□□□□□ -0.98
TSPAN4-203ENST00000397397 KRTAP20-1Q3LI63 56 aa8.86□□□□□ -0.99
TSPAN4-203ENST00000397397 SPRR2EP22531 72 aa8.85□□□□□ -0.99
TSPAN4-203ENST00000397397 SPRR2BP35325 72 aa8.85□□□□□ -0.99
TSPAN4-203ENST00000397397 SPRR2AP35326 72 aa8.85□□□□□ -0.99
TSPAN4-203ENST00000397397 KRTAP19-7Q3SYF9 63 aa8.8□□□□□ -1
TSPAN4-203ENST00000397397 KRTAP19-5Q3LI72 72 aa8.8□□□□□ -1
TSPAN4-203ENST00000397397 LCE1AQ5T7P2 110 aa8.76□□□□□ -1.01
TSPAN4-203ENST00000397397 PMAIP1Q13794 54 aa8.74□□□□□ -1.01
TSPAN4-203ENST00000397397 KRTAP23-1A1A580 65 aa8.73□□□□□ -1.01
TSPAN4-203ENST00000397397 PRO0628Q9UI54 55 aa8.72□□□□□ -1.01
TSPAN4-203ENST00000397397 MT1EP04732 61 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms