RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 A0A1B0GU69 56 aa9.57□□□□□ -0.88
CCDC88C-203ENST00000389856 SEC61BP60468 96 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-203ENST00000389856 A8MU10 97 aa9.47□□□□□ -0.89
CCDC88C-203ENST00000389856 PMAIP1Q13794 54 aa9.46□□□□□ -0.89
CCDC88C-203ENST00000389856 SEC61GP60059 68 aa9.42□□□□□ -0.9
CCDC88C-203ENST00000389856 UQCR11O14957 56 aa9.42□□□□□ -0.9
CCDC88C-203ENST00000389856 COX6B2Q6YFQ2 88 aa9.42□□□□□ -0.9
CCDC88C-203ENST00000389856 HMCN2Q8NDA2 5059 aa9.41□□□□□ -0.9
CCDC88C-203ENST00000389856 SPATA8Q6RVD6 105 aa9.4□□□□□ -0.9
CCDC88C-203ENST00000389856 KRTAP3-1Q9BYR8 98 aa9.38□□□□□ -0.91
CCDC88C-203ENST00000389856 A6NN06 94 aa9.34□□□□□ -0.91
CCDC88C-203ENST00000389856 RBM12B-AS1Q9P1G2 102 aa9.34□□□□□ -0.91
CCDC88C-203ENST00000389856 MIR22HGQ0VDD5 57 aa9.33□□□□□ -0.92
CCDC88C-203ENST00000389856 LPAP08519 4548 aa9.32□□□□□ -0.92
CCDC88C-203ENST00000389856 LRP2P98164 4655 aa9.31□□□□□ -0.92
CCDC88C-203ENST00000389856 KTN1-AS1Q86SY8 53 aa9.27□□□□□ -0.93
CCDC88C-203ENST00000389856 UBR4Q5T4S7 5183 aa9.25□□□□□ -0.93
CCDC88C-203ENST00000389856 H1FX-AS1Q4G0G2 97 aa9.2□□□□□ -0.94
CCDC88C-203ENST00000389856 MUC17Q685J3 4493 aa9.16□□□□□ -0.94
CCDC88C-203ENST00000389856 S4R3F8 94 aa9.14□□□□□ -0.95
CCDC88C-203ENST00000389856 A0A1B0GU33 70 aa9.13□□□□□ -0.95
CCDC88C-203ENST00000389856 KRTAP4-1Q9BYQ7 146 aa9.1□□□□□ -0.95
CCDC88C-203ENST00000389856 KRTAP3-3Q9BYR6 98 aa9.09□□□□□ -0.95
CCDC88C-203ENST00000389856 KRTAP3-2Q9BYR7 98 aa9.09□□□□□ -0.95
CCDC88C-203ENST00000389856 H0YAA0 97 aa9.02□□□□□ -0.96
CCDC88C-203ENST00000389856 RNF213Q63HN8 5207 aa9.01□□□□□ -0.97
CCDC88C-203ENST00000389856 CSAG1Q6PB30 78 aa8.96□□□□□ -0.98
CCDC88C-203ENST00000389856 K7ERS5 55 aa8.88□□□□□ -0.99
CCDC88C-203ENST00000389856 KRTAP10-6P60371 365 aaPredicted RBP8.88□□□□□ -0.99
CCDC88C-203ENST00000389856 KRTAP19-2Q3LHN2 52 aa8.87□□□□□ -0.99
CCDC88C-203ENST00000389856 MUC2Q02817 5179 aa8.74□□□□□ -1.01
CCDC88C-203ENST00000389856 PRAC1Q96KF2 57 aa8.72□□□□□ -1.01
CCDC88C-203ENST00000389856 ADM2Q7Z4H4 148 aa8.71□□□□□ -1.02
CCDC88C-203ENST00000389856 P0C880 135 aa8.69□□□□□ -1.02
CCDC88C-203ENST00000389856 LCE2CQ5TA81 110 aa8.68□□□□□ -1.02
CCDC88C-203ENST00000389856 KRTAP13-4Q3LI77 160 aa8.66□□□□□ -1.02
CCDC88C-203ENST00000389856 M0QZ58 72 aa8.64□□□□□ -1.03
CCDC88C-203ENST00000389856 FLGP20930 4061 aaPredicted RBP8.63□□□□□ -1.03
CCDC88C-203ENST00000389856 M0R2T5 61 aa8.59□□□□□ -1.03
CCDC88C-203ENST00000389856 A0A0D9SG42 100 aa8.56□□□□□ -1.04
CCDC88C-203ENST00000389856 ROMO1P60602 79 aa8.55□□□□□ -1.04
CCDC88C-203ENST00000389856 MT1HP80294 61 aa8.55□□□□□ -1.04
CCDC88C-203ENST00000389856 LINC01554Q52M75 96 aa8.52□□□□□ -1.05
CCDC88C-203ENST00000389856 KRTAP25-1Q3LHN0 102 aa8.5□□□□□ -1.05
CCDC88C-203ENST00000389856 FAT4Q6V0I7 4981 aa8.46□□□□□ -1.05
CCDC88C-203ENST00000389856 R4GN34 69 aa8.44□□□□□ -1.06
CCDC88C-203ENST00000389856 CRIPTQ9P021 101 aa8.43□□□□□ -1.06
CCDC88C-203ENST00000389856 KRTAP12-1P59990 96 aa8.42□□□□□ -1.06
CCDC88C-203ENST00000389856 KRTAP12-2P59991 146 aa8.4□□□□□ -1.07
CCDC88C-203ENST00000389856 SPINT4Q6UDR6 99 aa8.35□□□□□ -1.07
CCDC88C-203ENST00000389856 LCE2AQ5TA79 106 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-203ENST00000389856 LORP23490 312 aaPredicted RBP8.25□□□□□ -1.09
CCDC88C-203ENST00000389856 MT2AP02795 61 aa8.22□□□□□ -1.09
CCDC88C-203ENST00000389856 KRTAP10-10P60014 251 aa8.22□□□□□ -1.09
CCDC88C-203ENST00000389856 KRTAP9-8Q9BYQ0 159 aa8.21□□□□□ -1.09
CCDC88C-203ENST00000389856 MT1FP04733 61 aa8.15□□□□□ -1.1
CCDC88C-203ENST00000389856 SPRR2GQ9BYE4 73 aa8.12□□□□□ -1.11
CCDC88C-203ENST00000389856 KRTAP9-2Q9BYQ4 174 aa8.12□□□□□ -1.11
CCDC88C-203ENST00000389856 KRTAP19-1Q8IUB9 90 aa8.02□□□□□ -1.13
CCDC88C-203ENST00000389856 C10orf95Q9H7T3 257 aa8□□□□□ -1.13
CCDC88C-203ENST00000389856 PLAC4Q8WY50 150 aa7.96□□□□□ -1.13
CCDC88C-203ENST00000389856 LCE2BO14633 110 aa7.93□□□□□ -1.14
CCDC88C-203ENST00000389856 CAMK2N1Q7Z7J9 78 aa7.93□□□□□ -1.14
CCDC88C-203ENST00000389856 KRTAP9-3Q9BYQ3 159 aa7.93□□□□□ -1.14
CCDC88C-203ENST00000389856 KRTAP19-8Q3LI54 63 aa7.89□□□□□ -1.15
CCDC88C-203ENST00000389856 FSIP2Q5CZC0 6907 aa7.85□□□□□ -1.15
CCDC88C-203ENST00000389856 KRTAP9-6A0A140TA67 174 aa7.82□□□□□ -1.16
CCDC88C-203ENST00000389856 PP632Q6XCG6 107 aa7.8□□□□□ -1.16
CCDC88C-203ENST00000389856 MT1BP07438 61 aa7.72□□□□□ -1.17
CCDC88C-203ENST00000389856 KRTAP23-1A1A580 65 aa7.68□□□□□ -1.18
CCDC88C-203ENST00000389856 CRCT1Q9UGL9 99 aa7.67□□□□□ -1.18
CCDC88C-203ENST00000389856 TNP1P09430 55 aa7.65□□□□□ -1.18
CCDC88C-203ENST00000389856 KRTAP15-1Q3LI76 137 aa7.65□□□□□ -1.18
CCDC88C-203ENST00000389856 PRO2289Q9P1D8 64 aa7.6□□□□□ -1.19
CCDC88C-203ENST00000389856 LOC100996750A0A140TA64 210 aa7.5□□□□□ -1.21
CCDC88C-203ENST00000389856 KRTAP4-6Q9BYQ5 205 aa7.5□□□□□ -1.21
CCDC88C-203ENST00000389856 MT1XP80297 61 aa7.49□□□□□ -1.21
CCDC88C-203ENST00000389856 KRTAP10-5P60370 271 aa7.48□□□□□ -1.21
CCDC88C-203ENST00000389856 USH2AO75445 5202 aa7.42□□□□□ -1.22
CCDC88C-203ENST00000389856 SSPOA2VEC9 5147 aa7.37□□□□□ -1.23
CCDC88C-203ENST00000389856 H3BS24 57 aa7.28□□□□□ -1.24
CCDC88C-203ENST00000389856 KRTAP19-6Q3LI70 58 aa7.28□□□□□ -1.24
CCDC88C-203ENST00000389856 NDUFAF8A1L188 74 aa7.27□□□□□ -1.25
CCDC88C-203ENST00000389856 KRTAP10-12P60413 245 aa7.2□□□□□ -1.26
CCDC88C-203ENST00000389856 FCGBPQ9Y6R7 5405 aaPredicted RBP7.17□□□□□ -1.26
CCDC88C-203ENST00000389856 KRTAP10-7P60409 375 aaPredicted RBP7.16□□□□□ -1.26
CCDC88C-203ENST00000389856 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.15□□□□□ -1.27
CCDC88C-203ENST00000389856 LCE3AQ5TA76 89 aa7.14□□□□□ -1.27
CCDC88C-203ENST00000389856 LUZP6Q538Z0 58 aa7.13□□□□□ -1.27
CCDC88C-203ENST00000389856 KRTAP8-1Q8IUC2 63 aa7.11□□□□□ -1.27
CCDC88C-203ENST00000389856 SPRR5A0A1B0GTR4 108 aa7.09□□□□□ -1.28
CCDC88C-203ENST00000389856 KRTAP9-7A8MTY7 169 aa7.05□□□□□ -1.28
CCDC88C-203ENST00000389856 MACF1Q9UPN3 7388 aaKnown RBP7.01□□□□□ -1.29
CCDC88C-203ENST00000389856 SYNE2Q8WXH0 6885 aaKnown RBP6.92□□□□□ -1.3
CCDC88C-203ENST00000389856 KRTAP12-3P60328 96 aa6.89□□□□□ -1.31
CCDC88C-203ENST00000389856 KRTAP4-8A0A0G2JLE6 195 aa6.83□□□□□ -1.32
CCDC88C-203ENST00000389856 KRTAP4-8Q9BYQ9 185 aa6.83□□□□□ -1.32
CCDC88C-203ENST00000389856 KRTAP19-5Q3LI72 72 aa6.79□□□□□ -1.32
CCDC88C-203ENST00000389856 A0A0A0MQY5 61 aa6.73□□□□□ -1.33
CCDC88C-203ENST00000389856 KRTAP19-7Q3SYF9 63 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms