RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SEC61GP60059 68 aa12.79□□□□□ -0.36
SHOX2-201ENST00000389589 RBM12B-AS1Q9P1G2 102 aa12.74□□□□□ -0.37
SHOX2-201ENST00000389589 CDC42SE1Q9NRR8 79 aa12.72□□□□□ -0.37
SHOX2-201ENST00000389589 PCLOQ9Y6V0 5065 aa12.72□□□□□ -0.37
SHOX2-201ENST00000389589 H1FX-AS1Q4G0G2 97 aa12.71□□□□□ -0.37
SHOX2-201ENST00000389589 S4R3F8 94 aa12.71□□□□□ -0.38
SHOX2-201ENST00000389589 LCA10Q71F78 164 aa12.69□□□□□ -0.38
SHOX2-201ENST00000389589 SVIPQ8NHG7 77 aa12.67□□□□□ -0.38
SHOX2-201ENST00000389589 KRTAP3-3Q9BYR6 98 aa12.65□□□□□ -0.39
SHOX2-201ENST00000389589 A8MU10 97 aa12.63□□□□□ -0.39
SHOX2-201ENST00000389589 UQCR11O14957 56 aa12.63□□□□□ -0.39
SHOX2-201ENST00000389589 SPATA8Q6RVD6 105 aa12.53□□□□□ -0.4
SHOX2-201ENST00000389589 MUC17Q685J3 4493 aa12.52□□□□□ -0.41
SHOX2-201ENST00000389589 MIR22HGQ0VDD5 57 aa12.5□□□□□ -0.41
SHOX2-201ENST00000389589 KRTAP4-1Q9BYQ7 146 aa12.47□□□□□ -0.41
SHOX2-201ENST00000389589 A0A1B0GU33 70 aa12.44□□□□□ -0.42
SHOX2-201ENST00000389589 CSAG1Q6PB30 78 aa12.39□□□□□ -0.43
SHOX2-201ENST00000389589 HERC1Q15751 4861 aa12.36□□□□□ -0.43
SHOX2-201ENST00000389589 HMCN2Q8NDA2 5059 aa12.34□□□□□ -0.43
SHOX2-201ENST00000389589 PMAIP1Q13794 54 aa12.32□□□□□ -0.44
SHOX2-201ENST00000389589 KRTAP10-6P60371 365 aaPredicted RBP12.31□□□□□ -0.44
SHOX2-201ENST00000389589 KRTAP3-2Q9BYR7 98 aa12.3□□□□□ -0.44
SHOX2-201ENST00000389589 H0YAA0 97 aa12.28□□□□□ -0.44
SHOX2-201ENST00000389589 KRTAP19-2Q3LHN2 52 aa12.21□□□□□ -0.45
SHOX2-201ENST00000389589 A6NN06 94 aa12.18□□□□□ -0.46
SHOX2-201ENST00000389589 ADM2Q7Z4H4 148 aa12.18□□□□□ -0.46
SHOX2-201ENST00000389589 P0C880 135 aa12.15□□□□□ -0.46
SHOX2-201ENST00000389589 KRTAP13-4Q3LI77 160 aa12.02□□□□□ -0.49
SHOX2-201ENST00000389589 MUC2Q02817 5179 aa11.97□□□□□ -0.49
SHOX2-201ENST00000389589 FLGP20930 4061 aaPredicted RBP11.96□□□□□ -0.49
SHOX2-201ENST00000389589 M0QZ58 72 aa11.91□□□□□ -0.5
SHOX2-201ENST00000389589 KTN1-AS1Q86SY8 53 aa11.91□□□□□ -0.5
SHOX2-201ENST00000389589 K7ERS5 55 aa11.9□□□□□ -0.5
SHOX2-201ENST00000389589 A0A0D9SG42 100 aa11.85□□□□□ -0.51
SHOX2-201ENST00000389589 LCE2CQ5TA81 110 aa11.77□□□□□ -0.52
SHOX2-201ENST00000389589 RNF213Q63HN8 5207 aa11.74□□□□□ -0.53
SHOX2-201ENST00000389589 R4GN34 69 aa11.74□□□□□ -0.53
SHOX2-201ENST00000389589 UBR4Q5T4S7 5183 aa11.69□□□□□ -0.54
SHOX2-201ENST00000389589 LORP23490 312 aaPredicted RBP11.62□□□□□ -0.55
SHOX2-201ENST00000389589 KRTAP12-1P59990 96 aa11.59□□□□□ -0.55
SHOX2-201ENST00000389589 KRTAP12-2P59991 146 aa11.58□□□□□ -0.56
SHOX2-201ENST00000389589 SPINT4Q6UDR6 99 aa11.56□□□□□ -0.56
SHOX2-201ENST00000389589 LINC01554Q52M75 96 aa11.53□□□□□ -0.56
SHOX2-201ENST00000389589 MT1HP80294 61 aa11.52□□□□□ -0.57
SHOX2-201ENST00000389589 CRIPTQ9P021 101 aa11.51□□□□□ -0.57
SHOX2-201ENST00000389589 M0R2T5 61 aa11.48□□□□□ -0.57
SHOX2-201ENST00000389589 PRAC1Q96KF2 57 aa11.47□□□□□ -0.57
SHOX2-201ENST00000389589 FAT4Q6V0I7 4981 aa11.46□□□□□ -0.57
SHOX2-201ENST00000389589 ROMO1P60602 79 aa11.45□□□□□ -0.58
SHOX2-201ENST00000389589 MT2AP02795 61 aa11.16□□□□□ -0.62
SHOX2-201ENST00000389589 KRTAP9-8Q9BYQ0 159 aa11.15□□□□□ -0.62
SHOX2-201ENST00000389589 KRTAP25-1Q3LHN0 102 aa11.15□□□□□ -0.63
SHOX2-201ENST00000389589 SPRR2GQ9BYE4 73 aa11.15□□□□□ -0.63
SHOX2-201ENST00000389589 KRTAP10-10P60014 251 aa11.11□□□□□ -0.63
SHOX2-201ENST00000389589 MT1FP04733 61 aa11.1□□□□□ -0.63
SHOX2-201ENST00000389589 KRTAP19-1Q8IUB9 90 aa11.05□□□□□ -0.64
SHOX2-201ENST00000389589 CAMK2N1Q7Z7J9 78 aa11.04□□□□□ -0.64
SHOX2-201ENST00000389589 C10orf95Q9H7T3 257 aa10.96□□□□□ -0.66
SHOX2-201ENST00000389589 PLAC4Q8WY50 150 aa10.89□□□□□ -0.67
SHOX2-201ENST00000389589 KRTAP19-8Q3LI54 63 aa10.79□□□□□ -0.68
SHOX2-201ENST00000389589 LCE2AQ5TA79 106 aaPredicted RBP10.79□□□□□ -0.68
SHOX2-201ENST00000389589 KRTAP9-3Q9BYQ3 159 aa10.73□□□□□ -0.69
SHOX2-201ENST00000389589 MT1BP07438 61 aa10.59□□□□□ -0.71
SHOX2-201ENST00000389589 TNP1P09430 55 aa10.57□□□□□ -0.72
SHOX2-201ENST00000389589 PP632Q6XCG6 107 aa10.49□□□□□ -0.73
SHOX2-201ENST00000389589 KRTAP23-1A1A580 65 aa10.38□□□□□ -0.75
SHOX2-201ENST00000389589 LCE2BO14633 110 aa10.36□□□□□ -0.75
SHOX2-201ENST00000389589 LCE2DQ5TA82 110 aaPredicted RBP10.35□□□□□ -0.75
SHOX2-201ENST00000389589 KRTAP10-5P60370 271 aa10.34□□□□□ -0.75
SHOX2-201ENST00000389589 MT1XP80297 61 aa10.34□□□□□ -0.75
SHOX2-201ENST00000389589 PRO2289Q9P1D8 64 aa10.23□□□□□ -0.77
SHOX2-201ENST00000389589 LCE3AQ5TA76 89 aa10.03□□□□□ -0.8
SHOX2-201ENST00000389589 USH2AO75445 5202 aa10□□□□□ -0.81
SHOX2-201ENST00000389589 KRTAP10-12P60413 245 aa9.95□□□□□ -0.82
SHOX2-201ENST00000389589 KRTAP15-1Q3LI76 137 aa9.95□□□□□ -0.82
SHOX2-201ENST00000389589 KRTAP10-7P60409 375 aaPredicted RBP9.94□□□□□ -0.82
SHOX2-201ENST00000389589 KRTAP8-1Q8IUC2 63 aa9.86□□□□□ -0.83
SHOX2-201ENST00000389589 KRTAP9-2Q9BYQ4 174 aa9.86□□□□□ -0.83
SHOX2-201ENST00000389589 SSPOA2VEC9 5147 aa9.68□□□□□ -0.86
SHOX2-201ENST00000389589 KRTAP19-6Q3LI70 58 aa9.65□□□□□ -0.86
SHOX2-201ENST00000389589 KRTAP12-3P60328 96 aa9.63□□□□□ -0.87
SHOX2-201ENST00000389589 FSIP2Q5CZC0 6907 aa9.6□□□□□ -0.87
SHOX2-201ENST00000389589 KRTAP4-8A0A0G2JLE6 195 aa9.44□□□□□ -0.9
SHOX2-201ENST00000389589 KRTAP4-8Q9BYQ9 185 aa9.44□□□□□ -0.9
SHOX2-201ENST00000389589 KRTAP19-5Q3LI72 72 aa9.44□□□□□ -0.9
SHOX2-201ENST00000389589 SPRR5A0A1B0GTR4 108 aa9.42□□□□□ -0.9
SHOX2-201ENST00000389589 CRCT1Q9UGL9 99 aa9.4□□□□□ -0.91
SHOX2-201ENST00000389589 KMT2DO14686 5537 aa9.36□□□□□ -0.91
SHOX2-201ENST00000389589 KRTAP9-6A0A140TA67 174 aa9.35□□□□□ -0.91
SHOX2-201ENST00000389589 NDUFAF8A1L188 74 aa9.34□□□□□ -0.91
SHOX2-201ENST00000389589 LUZP6Q538Z0 58 aa9.32□□□□□ -0.92
SHOX2-201ENST00000389589 KRTAP19-7Q3SYF9 63 aa9.22□□□□□ -0.93
SHOX2-201ENST00000389589 FCGBPQ9Y6R7 5405 aaPredicted RBP9.14□□□□□ -0.95
SHOX2-201ENST00000389589 MT1EP04732 61 aa9.04□□□□□ -0.96
SHOX2-201ENST00000389589 LCE3CQ5T5A8 94 aa9.03□□□□□ -0.96
SHOX2-201ENST00000389589 KRTAP19-4Q3LI73 84 aa9.01□□□□□ -0.97
SHOX2-201ENST00000389589 MT1LQ93083 61 aa8.92□□□□□ -0.98
SHOX2-201ENST00000389589 H3BS24 57 aa8.87□□□□□ -0.99
SHOX2-201ENST00000389589 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.72□□□□□ -1.01
SHOX2-201ENST00000389589 MACF1Q9UPN3 7388 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms