RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RPL37P61927 97 aaKnown RBP5.46□□□□□ -1.54
VPS53-202ENST00000389040 C20orf166-AS1Q96NR2 134 aa5.46□□□□□ -1.54
VPS53-202ENST00000389040 C7orf65Q6ZTY9 151 aa5.44□□□□□ -1.54
VPS53-202ENST00000389040 A8MUN3 132 aa5.43□□□□□ -1.54
VPS53-202ENST00000389040 ATP11AUNQ6ZP68 121 aa5.42□□□□□ -1.54
VPS53-202ENST00000389040 PRR15LQ9BU68 103 aa5.41□□□□□ -1.54
VPS53-202ENST00000389040 A0A0A0MQY5 61 aa5.4□□□□□ -1.54
VPS53-202ENST00000389040 BRK1Q8WUW1 75 aa5.4□□□□□ -1.54
VPS53-202ENST00000389040 CHKB-CPT1BH3BT56 60 aa5.4□□□□□ -1.55
VPS53-202ENST00000389040 Q5VV11 94 aa5.4□□□□□ -1.55
VPS53-202ENST00000389040 LINC01558Q9Y6Z2 57 aa5.39□□□□□ -1.55
VPS53-202ENST00000389040 MUC17Q685J3 4493 aa5.38□□□□□ -1.55
VPS53-202ENST00000389040 RNF213Q63HN8 5207 aa5.36□□□□□ -1.55
VPS53-202ENST00000389040 MUC2Q02817 5179 aa5.34□□□□□ -1.55
VPS53-202ENST00000389040 SPINK7P58062 85 aa5.33□□□□□ -1.56
VPS53-202ENST00000389040 KRTAP4-1Q9BYQ7 146 aa5.29□□□□□ -1.56
VPS53-202ENST00000389040 A6NED7 52 aa5.29□□□□□ -1.56
VPS53-202ENST00000389040 KRTAP3-1Q9BYR8 98 aa5.25□□□□□ -1.57
VPS53-202ENST00000389040 A0A1B0GU69 56 aa5.25□□□□□ -1.57
VPS53-202ENST00000389040 A8MU10 97 aa5.23□□□□□ -1.57
VPS53-202ENST00000389040 LCA10Q71F78 164 aa5.23□□□□□ -1.57
VPS53-202ENST00000389040 COX6B2Q6YFQ2 88 aa5.22□□□□□ -1.57
VPS53-202ENST00000389040 SPTSSBQ8NFR3 76 aa5.22□□□□□ -1.57
VPS53-202ENST00000389040 CDC42SE1Q9NRR8 79 aa5.22□□□□□ -1.57
VPS53-202ENST00000389040 PMAIP1Q13794 54 aa5.21□□□□□ -1.58
VPS53-202ENST00000389040 KRTAP19-2Q3LHN2 52 aa5.17□□□□□ -1.58
VPS53-202ENST00000389040 RBM12B-AS1Q9P1G2 102 aa5.17□□□□□ -1.58
VPS53-202ENST00000389040 FAT4Q6V0I7 4981 aa5.13□□□□□ -1.59
VPS53-202ENST00000389040 UQCR11O14957 56 aa5.13□□□□□ -1.59
VPS53-202ENST00000389040 SPATA8Q6RVD6 105 aa5.1□□□□□ -1.59
VPS53-202ENST00000389040 MIR22HGQ0VDD5 57 aa5.09□□□□□ -1.59
VPS53-202ENST00000389040 MT1HP80294 61 aa5.08□□□□□ -1.6
VPS53-202ENST00000389040 S4R3F8 94 aa5.05□□□□□ -1.6
VPS53-202ENST00000389040 A6NN06 94 aa5.04□□□□□ -1.6
VPS53-202ENST00000389040 H1FX-AS1Q4G0G2 97 aa5.03□□□□□ -1.6
VPS53-202ENST00000389040 M0R2T5 61 aa5.02□□□□□ -1.61
VPS53-202ENST00000389040 FLGP20930 4061 aaPredicted RBP5.02□□□□□ -1.61
VPS53-202ENST00000389040 A0A1B0GU33 70 aa5.01□□□□□ -1.61
VPS53-202ENST00000389040 KRTAP19-4Q3LI73 84 aa5.01□□□□□ -1.61
VPS53-202ENST00000389040 H0YAA0 97 aa4.99□□□□□ -1.61
VPS53-202ENST00000389040 KTN1-AS1Q86SY8 53 aa4.98□□□□□ -1.61
VPS53-202ENST00000389040 KRTAP10-6P60371 365 aaPredicted RBP4.95□□□□□ -1.62
VPS53-202ENST00000389040 CSAG1Q6PB30 78 aa4.9□□□□□ -1.62
VPS53-202ENST00000389040 P0C880 135 aa4.87□□□□□ -1.63
VPS53-202ENST00000389040 ADM2Q7Z4H4 148 aa4.87□□□□□ -1.63
VPS53-202ENST00000389040 KRTAP9-8Q9BYQ0 159 aa4.85□□□□□ -1.63
VPS53-202ENST00000389040 KRTAP13-4Q3LI77 160 aa4.85□□□□□ -1.63
VPS53-202ENST00000389040 K7ERS5 55 aa4.81□□□□□ -1.64
VPS53-202ENST00000389040 A0A0D9SG42 100 aa4.79□□□□□ -1.64
VPS53-202ENST00000389040 MT2AP02795 61 aa4.79□□□□□ -1.64
VPS53-202ENST00000389040 KRTAP9-2Q9BYQ4 174 aa4.78□□□□□ -1.64
VPS53-202ENST00000389040 PRAC1Q96KF2 57 aa4.78□□□□□ -1.64
VPS53-202ENST00000389040 KRTAP10-10P60014 251 aa4.76□□□□□ -1.65
VPS53-202ENST00000389040 M0QZ58 72 aa4.75□□□□□ -1.65
VPS53-202ENST00000389040 MT1FP04733 61 aa4.74□□□□□ -1.65
VPS53-202ENST00000389040 KRTAP19-1Q8IUB9 90 aa4.72□□□□□ -1.65
VPS53-202ENST00000389040 KRTAP15-1Q3LI76 137 aa4.71□□□□□ -1.66
VPS53-202ENST00000389040 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
VPS53-202ENST00000389040 KRTAP9-3Q9BYQ3 159 aa4.7□□□□□ -1.66
VPS53-202ENST00000389040 KRTAP4-6Q9BYQ5 205 aa4.7□□□□□ -1.66
VPS53-202ENST00000389040 LCE4AQ5TA78 99 aa4.69□□□□□ -1.66
VPS53-202ENST00000389040 KRTAP9-6A0A140TA67 174 aa4.68□□□□□ -1.66
VPS53-202ENST00000389040 KRTAP9-7A8MTY7 169 aa4.68□□□□□ -1.66
VPS53-202ENST00000389040 KRTAP12-2P59991 146 aa4.68□□□□□ -1.66
VPS53-202ENST00000389040 LINC01554Q52M75 96 aa4.68□□□□□ -1.66
VPS53-202ENST00000389040 R4GN34 69 aa4.67□□□□□ -1.66
VPS53-202ENST00000389040 KRTAP12-1P59990 96 aa4.66□□□□□ -1.66
VPS53-202ENST00000389040 ROMO1P60602 79 aa4.66□□□□□ -1.66
VPS53-202ENST00000389040 CRIPTQ9P021 101 aa4.66□□□□□ -1.66
VPS53-202ENST00000389040 SPINT4Q6UDR6 99 aa4.65□□□□□ -1.67
VPS53-202ENST00000389040 KRTAP4-12Q9BQ66 201 aa4.6□□□□□ -1.67
VPS53-202ENST00000389040 KRTAP25-1Q3LHN0 102 aa4.59□□□□□ -1.67
VPS53-202ENST00000389040 SPRR2GQ9BYE4 73 aa4.59□□□□□ -1.67
VPS53-202ENST00000389040 KRTAP9-4Q9BYQ2 154 aa4.59□□□□□ -1.67
VPS53-202ENST00000389040 CRCT1Q9UGL9 99 aa4.58□□□□□ -1.68
VPS53-202ENST00000389040 KRTAP9-9Q9BYP9 154 aa4.55□□□□□ -1.68
VPS53-202ENST00000389040 KRTAP4-8Q9BYQ9 185 aa4.52□□□□□ -1.69
VPS53-202ENST00000389040 FSIP2Q5CZC0 6907 aa4.52□□□□□ -1.69
VPS53-202ENST00000389040 USH2AO75445 5202 aa4.51□□□□□ -1.69
VPS53-202ENST00000389040 KRTAP19-8Q3LI54 63 aa4.5□□□□□ -1.69
VPS53-202ENST00000389040 KRTAP19-6Q3LI70 58 aa4.45□□□□□ -1.7
VPS53-202ENST00000389040 C10orf95Q9H7T3 257 aa4.44□□□□□ -1.7
VPS53-202ENST00000389040 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.42□□□□□ -1.7
VPS53-202ENST00000389040 MT1BP07438 61 aa4.42□□□□□ -1.7
VPS53-202ENST00000389040 CAMK2N1Q7Z7J9 78 aa4.4□□□□□ -1.7
VPS53-202ENST00000389040 SSPOA2VEC9 5147 aa4.39□□□□□ -1.71
VPS53-202ENST00000389040 PLAC4Q8WY50 150 aa4.36□□□□□ -1.71
VPS53-202ENST00000389040 LCE3BQ5TA77 95 aa4.34□□□□□ -1.71
VPS53-202ENST00000389040 FCGBPQ9Y6R7 5405 aaPredicted RBP4.31□□□□□ -1.72
VPS53-202ENST00000389040 KRTAP10-5P60370 271 aa4.31□□□□□ -1.72
VPS53-202ENST00000389040 PRO2289Q9P1D8 64 aa4.31□□□□□ -1.72
VPS53-202ENST00000389040 LCE5AQ5TCM9 118 aa4.29□□□□□ -1.72
VPS53-202ENST00000389040 TNP1P09430 55 aa4.22□□□□□ -1.73
VPS53-202ENST00000389040 PP632Q6XCG6 107 aa4.22□□□□□ -1.73
VPS53-202ENST00000389040 MT1XP80297 61 aa4.21□□□□□ -1.74
VPS53-202ENST00000389040 MACF1Q9UPN3 7388 aaKnown RBP4.1□□□□□ -1.75
VPS53-202ENST00000389040 KRTAP6-3Q3LI67 103 aa4.08□□□□□ -1.76
VPS53-202ENST00000389040 LCE1DQ5T752 114 aa4.06□□□□□ -1.76
VPS53-202ENST00000389040 LUZP6Q538Z0 58 aa4.05□□□□□ -1.76
VPS53-202ENST00000389040 KRTAP10-12P60413 245 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms