RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 KRTAP3-1Q9BYR8 98 aa11.36□□□□□ -0.59
TRIM54-202ENST00000380075 RPL37P61927 97 aaKnown RBP11.35□□□□□ -0.59
TRIM54-202ENST00000380075 LPAP08519 4548 aa11.33□□□□□ -0.6
TRIM54-202ENST00000380075 COX6B2Q6YFQ2 88 aa11.33□□□□□ -0.6
TRIM54-202ENST00000380075 UQCR11O14957 56 aa11.32□□□□□ -0.6
TRIM54-202ENST00000380075 SEC61GP60059 68 aa11.32□□□□□ -0.6
TRIM54-202ENST00000380075 XP32Q5T750 250 aa11.28□□□□□ -0.6
TRIM54-202ENST00000380075 SPATA8Q6RVD6 105 aa11.28□□□□□ -0.6
TRIM54-202ENST00000380075 LRP2P98164 4655 aa11.28□□□□□ -0.6
TRIM54-202ENST00000380075 A6NN06 94 aa11.23□□□□□ -0.61
TRIM54-202ENST00000380075 MIR22HGQ0VDD5 57 aa11.23□□□□□ -0.61
TRIM54-202ENST00000380075 TPRXLQ17RH7 258 aa11.16□□□□□ -0.62
TRIM54-202ENST00000380075 UBR4Q5T4S7 5183 aa11.13□□□□□ -0.63
TRIM54-202ENST00000380075 KTN1-AS1Q86SY8 53 aa11.12□□□□□ -0.63
TRIM54-202ENST00000380075 A0A1B0GU33 70 aa10.99□□□□□ -0.65
TRIM54-202ENST00000380075 H1FX-AS1Q4G0G2 97 aa10.97□□□□□ -0.65
TRIM54-202ENST00000380075 S4R3F8 94 aa10.93□□□□□ -0.66
TRIM54-202ENST00000380075 KRTAP3-3Q9BYR6 98 aa10.92□□□□□ -0.66
TRIM54-202ENST00000380075 H0YAA0 97 aa10.91□□□□□ -0.66
TRIM54-202ENST00000380075 RNF213Q63HN8 5207 aa10.89□□□□□ -0.67
TRIM54-202ENST00000380075 MUC17Q685J3 4493 aa10.88□□□□□ -0.67
TRIM54-202ENST00000380075 MUC2Q02817 5179 aa10.84□□□□□ -0.67
TRIM54-202ENST00000380075 RBM12B-AS1Q9P1G2 102 aa10.8□□□□□ -0.68
TRIM54-202ENST00000380075 SEC61BP60468 96 aaKnown RBP10.79□□□□□ -0.68
TRIM54-202ENST00000380075 KRTAP10-6P60371 365 aaPredicted RBP10.74□□□□□ -0.69
TRIM54-202ENST00000380075 KRTAP3-2Q9BYR7 98 aa10.7□□□□□ -0.7
TRIM54-202ENST00000380075 KRTAP4-1Q9BYQ7 146 aa10.68□□□□□ -0.7
TRIM54-202ENST00000380075 K7ERS5 55 aa10.64□□□□□ -0.71
TRIM54-202ENST00000380075 CSAG1Q6PB30 78 aa10.61□□□□□ -0.71
TRIM54-202ENST00000380075 ADM2Q7Z4H4 148 aa10.57□□□□□ -0.72
TRIM54-202ENST00000380075 PRAC1Q96KF2 57 aa10.57□□□□□ -0.72
TRIM54-202ENST00000380075 P0C880 135 aa10.53□□□□□ -0.72
TRIM54-202ENST00000380075 KRTAP13-4Q3LI77 160 aa10.52□□□□□ -0.73
TRIM54-202ENST00000380075 FAT4Q6V0I7 4981 aa10.42□□□□□ -0.74
TRIM54-202ENST00000380075 A0A0D9SG42 100 aa10.39□□□□□ -0.75
TRIM54-202ENST00000380075 M0QZ58 72 aa10.37□□□□□ -0.75
TRIM54-202ENST00000380075 KRTAP19-2Q3LHN2 52 aa10.34□□□□□ -0.75
TRIM54-202ENST00000380075 ROMO1P60602 79 aa10.28□□□□□ -0.76
TRIM54-202ENST00000380075 LCE2CQ5TA81 110 aa10.28□□□□□ -0.76
TRIM54-202ENST00000380075 LINC01554Q52M75 96 aa10.23□□□□□ -0.77
TRIM54-202ENST00000380075 KRTAP25-1Q3LHN0 102 aa10.21□□□□□ -0.77
TRIM54-202ENST00000380075 KRTAP12-1P59990 96 aa10.17□□□□□ -0.78
TRIM54-202ENST00000380075 KRTAP12-2P59991 146 aa10.17□□□□□ -0.78
TRIM54-202ENST00000380075 LCE2AQ5TA79 106 aaPredicted RBP10.16□□□□□ -0.78
TRIM54-202ENST00000380075 FLGP20930 4061 aaPredicted RBP10.12□□□□□ -0.79
TRIM54-202ENST00000380075 MT1HP80294 61 aa10.11□□□□□ -0.79
TRIM54-202ENST00000380075 SPINT4Q6UDR6 99 aa10.11□□□□□ -0.79
TRIM54-202ENST00000380075 R4GN34 69 aa10.11□□□□□ -0.79
TRIM54-202ENST00000380075 M0R2T5 61 aa9.95□□□□□ -0.82
TRIM54-202ENST00000380075 CRIPTQ9P021 101 aa9.95□□□□□ -0.82
TRIM54-202ENST00000380075 LORP23490 312 aaPredicted RBP9.91□□□□□ -0.82
TRIM54-202ENST00000380075 C10orf95Q9H7T3 257 aa9.72□□□□□ -0.85
TRIM54-202ENST00000380075 KRTAP9-8Q9BYQ0 159 aa9.65□□□□□ -0.86
TRIM54-202ENST00000380075 H3BS24 57 aa9.57□□□□□ -0.88
TRIM54-202ENST00000380075 MT2AP02795 61 aa9.55□□□□□ -0.88
TRIM54-202ENST00000380075 CAMK2N1Q7Z7J9 78 aa9.55□□□□□ -0.88
TRIM54-202ENST00000380075 MT1FP04733 61 aa9.5□□□□□ -0.89
TRIM54-202ENST00000380075 KRTAP10-10P60014 251 aa9.46□□□□□ -0.9
TRIM54-202ENST00000380075 KRTAP9-2Q9BYQ4 174 aa9.44□□□□□ -0.9
TRIM54-202ENST00000380075 LCE2DQ5TA82 110 aaPredicted RBP9.43□□□□□ -0.9
TRIM54-202ENST00000380075 SPRR2GQ9BYE4 73 aa9.41□□□□□ -0.9
TRIM54-202ENST00000380075 PP632Q6XCG6 107 aa9.33□□□□□ -0.92
TRIM54-202ENST00000380075 KRTAP9-3Q9BYQ3 159 aa9.32□□□□□ -0.92
TRIM54-202ENST00000380075 KRTAP19-1Q8IUB9 90 aa9.29□□□□□ -0.92
TRIM54-202ENST00000380075 FSIP2Q5CZC0 6907 aa9.28□□□□□ -0.92
TRIM54-202ENST00000380075 PLAC4Q8WY50 150 aa9.25□□□□□ -0.93
TRIM54-202ENST00000380075 TNP1P09430 55 aa9.21□□□□□ -0.94
TRIM54-202ENST00000380075 KRTAP15-1Q3LI76 137 aa9.2□□□□□ -0.94
TRIM54-202ENST00000380075 LCE2BO14633 110 aa9.19□□□□□ -0.94
TRIM54-202ENST00000380075 USH2AO75445 5202 aa9.16□□□□□ -0.94
TRIM54-202ENST00000380075 KRTAP23-1A1A580 65 aa9.15□□□□□ -0.94
TRIM54-202ENST00000380075 KRTAP19-8Q3LI54 63 aa9.06□□□□□ -0.96
TRIM54-202ENST00000380075 CRCT1Q9UGL9 99 aa9□□□□□ -0.97
TRIM54-202ENST00000380075 SSPOA2VEC9 5147 aa8.97□□□□□ -0.97
TRIM54-202ENST00000380075 KRTAP9-6A0A140TA67 174 aa8.94□□□□□ -0.98
TRIM54-202ENST00000380075 MT1BP07438 61 aa8.86□□□□□ -0.99
TRIM54-202ENST00000380075 NDUFAF8A1L188 74 aa8.77□□□□□ -1.01
TRIM54-202ENST00000380075 KRTAP19-6Q3LI70 58 aa8.73□□□□□ -1.01
TRIM54-202ENST00000380075 KRTAP10-5P60370 271 aa8.73□□□□□ -1.01
TRIM54-202ENST00000380075 MT1XP80297 61 aa8.72□□□□□ -1.01
TRIM54-202ENST00000380075 FCGBPQ9Y6R7 5405 aaPredicted RBP8.7□□□□□ -1.02
TRIM54-202ENST00000380075 LCE3AQ5TA76 89 aa8.66□□□□□ -1.02
TRIM54-202ENST00000380075 PRO2289Q9P1D8 64 aa8.6□□□□□ -1.03
TRIM54-202ENST00000380075 LUZP6Q538Z0 58 aa8.55□□□□□ -1.04
TRIM54-202ENST00000380075 KRTAP8-1Q8IUC2 63 aa8.55□□□□□ -1.04
TRIM54-202ENST00000380075 SPRR5A0A1B0GTR4 108 aa8.5□□□□□ -1.05
TRIM54-202ENST00000380075 KRTAP10-12P60413 245 aa8.5□□□□□ -1.05
TRIM54-202ENST00000380075 MACF1Q9UPN3 7388 aaKnown RBP8.43□□□□□ -1.06
TRIM54-202ENST00000380075 KRTAP10-7P60409 375 aaPredicted RBP8.4□□□□□ -1.06
TRIM54-202ENST00000380075 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.36□□□□□ -1.07
TRIM54-202ENST00000380075 KRTAP12-3P60328 96 aa8.31□□□□□ -1.08
TRIM54-202ENST00000380075 SYNE2Q8WXH0 6885 aaKnown RBP8.27□□□□□ -1.09
TRIM54-202ENST00000380075 KRTAP9-7A8MTY7 169 aa8.1□□□□□ -1.11
TRIM54-202ENST00000380075 KMT2DO14686 5537 aa8.09□□□□□ -1.11
TRIM54-202ENST00000380075 KRTAP19-5Q3LI72 72 aa8.02□□□□□ -1.12
TRIM54-202ENST00000380075 A0A0A0MQY5 61 aa8.01□□□□□ -1.13
TRIM54-202ENST00000380075 KRTAP6-3Q3LI67 103 aa7.96□□□□□ -1.14
TRIM54-202ENST00000380075 KRTAP4-8A0A0G2JLE6 195 aa7.93□□□□□ -1.14
TRIM54-202ENST00000380075 KRTAP4-8Q9BYQ9 185 aa7.93□□□□□ -1.14
TRIM54-202ENST00000380075 LCE3CQ5T5A8 94 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms