RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 APOBP04114 4563 aaKnown RBP4.71□□□□□ -1.66
VPS36-201ENST00000378060 ADM2Q7Z4H4 148 aa4.69□□□□□ -1.66
VPS36-201ENST00000378060 KIAA1109Q2LD37 5005 aa4.68□□□□□ -1.66
VPS36-201ENST00000378060 FAT1Q14517 4588 aa4.68□□□□□ -1.66
VPS36-201ENST00000378060 VPS13BQ7Z7G8 4022 aa4.67□□□□□ -1.66
VPS36-201ENST00000378060 A0A1B0GVY2 172 aa4.67□□□□□ -1.66
VPS36-201ENST00000378060 M0R2T5 61 aa4.67□□□□□ -1.66
VPS36-201ENST00000378060 HSPG2P98160 4391 aa4.66□□□□□ -1.66
VPS36-201ENST00000378060 A8MUU9 505 aa4.63□□□□□ -1.67
VPS36-201ENST00000378060 C20orf166-AS1Q96NR2 134 aa4.61□□□□□ -1.67
VPS36-201ENST00000378060 RYR1P21817 5038 aa4.61□□□□□ -1.67
VPS36-201ENST00000378060 KRTAP17-1Q9BYP8 105 aa4.58□□□□□ -1.68
VPS36-201ENST00000378060 KRTAP16-1A8MUX0 517 aa4.56□□□□□ -1.68
VPS36-201ENST00000378060 BIRC6Q9NR09 4857 aa4.55□□□□□ -1.68
VPS36-201ENST00000378060 MYCBP2O75592 4640 aa4.55□□□□□ -1.68
VPS36-201ENST00000378060 KRTAP1-4P0C5Y4 121 aa4.53□□□□□ -1.68
VPS36-201ENST00000378060 PLAC4Q8WY50 150 aa4.53□□□□□ -1.68
VPS36-201ENST00000378060 ABCA13Q86UQ4 5058 aa4.53□□□□□ -1.68
VPS36-201ENST00000378060 LRP1Q07954 4544 aaKnown RBP4.52□□□□□ -1.69
VPS36-201ENST00000378060 PKHD1L1Q86WI1 4243 aa4.49□□□□□ -1.69
VPS36-201ENST00000378060 NDUFAF8A1L188 74 aa4.49□□□□□ -1.69
VPS36-201ENST00000378060 PCLOQ9Y6V0 5065 aa4.49□□□□□ -1.69
VPS36-201ENST00000378060 HERC2O95714 4834 aa4.48□□□□□ -1.69
VPS36-201ENST00000378060 KRTAP4-5Q9BYR2 181 aa4.47□□□□□ -1.69
VPS36-201ENST00000378060 H0YAA0 97 aa4.46□□□□□ -1.7
VPS36-201ENST00000378060 KRTAP10-4P60372 401 aaPredicted RBP4.44□□□□□ -1.7
VPS36-201ENST00000378060 KRTAP13-3Q3SY46 172 aa4.43□□□□□ -1.7
VPS36-201ENST00000378060 FAT3Q8TDW7 4589 aa4.43□□□□□ -1.7
VPS36-201ENST00000378060 TNP1P09430 55 aa4.42□□□□□ -1.7
VPS36-201ENST00000378060 PP632Q6XCG6 107 aa4.41□□□□□ -1.7
VPS36-201ENST00000378060 TNXBP22105 4242 aa4.4□□□□□ -1.7
VPS36-201ENST00000378060 XP32Q5T750 250 aa4.4□□□□□ -1.7
VPS36-201ENST00000378060 HERC1Q15751 4861 aa4.35□□□□□ -1.71
VPS36-201ENST00000378060 C10orf95Q9H7T3 257 aa4.35□□□□□ -1.71
VPS36-201ENST00000378060 P0C880 135 aa4.34□□□□□ -1.71
VPS36-201ENST00000378060 TPRXLQ17RH7 258 aa4.32□□□□□ -1.72
VPS36-201ENST00000378060 LPAP08519 4548 aa4.25□□□□□ -1.73
VPS36-201ENST00000378060 MT1HL1P0DM35 61 aa4.24□□□□□ -1.73
VPS36-201ENST00000378060 KRTAP10-8P60410 259 aa4.23□□□□□ -1.73
VPS36-201ENST00000378060 HMCN2Q8NDA2 5059 aa4.16□□□□□ -1.74
VPS36-201ENST00000378060 LRP2P98164 4655 aa4.16□□□□□ -1.74
VPS36-201ENST00000378060 KRTAP3-1Q9BYR8 98 aa4.15□□□□□ -1.75
VPS36-201ENST00000378060 KRTAP12-2P59991 146 aa4.13□□□□□ -1.75
VPS36-201ENST00000378060 KRTAP12-1P59990 96 aa4.12□□□□□ -1.75
VPS36-201ENST00000378060 UBR4Q5T4S7 5183 aa4.12□□□□□ -1.75
VPS36-201ENST00000378060 MUC2Q02817 5179 aa4.1□□□□□ -1.75
VPS36-201ENST00000378060 RNF213Q63HN8 5207 aa4.08□□□□□ -1.76
VPS36-201ENST00000378060 KRTAP13-4Q3LI77 160 aa4.08□□□□□ -1.76
VPS36-201ENST00000378060 KRTAP10-10P60014 251 aa4.07□□□□□ -1.76
VPS36-201ENST00000378060 KRTAP10-6P60371 365 aaPredicted RBP4.06□□□□□ -1.76
VPS36-201ENST00000378060 PRO2289Q9P1D8 64 aa4.05□□□□□ -1.76
VPS36-201ENST00000378060 KRTAP3-2Q9BYR7 98 aa3.92□□□□□ -1.78
VPS36-201ENST00000378060 MUC17Q685J3 4493 aa3.92□□□□□ -1.78
VPS36-201ENST00000378060 FAT4Q6V0I7 4981 aa3.9□□□□□ -1.78
VPS36-201ENST00000378060 KRTAP3-3Q9BYR6 98 aa3.9□□□□□ -1.78
VPS36-201ENST00000378060 KRTAP4-1Q9BYQ7 146 aa3.88□□□□□ -1.79
VPS36-201ENST00000378060 KRTAP15-1Q3LI76 137 aa3.87□□□□□ -1.79
VPS36-201ENST00000378060 KRTAP23-1A1A580 65 aa3.74□□□□□ -1.81
VPS36-201ENST00000378060 FLGP20930 4061 aaPredicted RBP3.73□□□□□ -1.81
VPS36-201ENST00000378060 INE1O15225 51 aa3.73□□□□□ -1.81
VPS36-201ENST00000378060 KRTAP19-2Q3LHN2 52 aa3.69□□□□□ -1.82
VPS36-201ENST00000378060 LCE2CQ5TA81 110 aa3.66□□□□□ -1.82
VPS36-201ENST00000378060 KRTAP10-12P60413 245 aa3.64□□□□□ -1.83
VPS36-201ENST00000378060 MT1HP80294 61 aa3.6□□□□□ -1.83
VPS36-201ENST00000378060 KRTAP12-3P60328 96 aa3.59□□□□□ -1.84
VPS36-201ENST00000378060 LORP23490 312 aaPredicted RBP3.58□□□□□ -1.84
VPS36-201ENST00000378060 LCE3AQ5TA76 89 aa3.53□□□□□ -1.84
VPS36-201ENST00000378060 LCE2AQ5TA79 106 aaPredicted RBP3.53□□□□□ -1.84
VPS36-201ENST00000378060 FSIP2Q5CZC0 6907 aa3.47□□□□□ -1.85
VPS36-201ENST00000378060 USH2AO75445 5202 aa3.45□□□□□ -1.86
VPS36-201ENST00000378060 KRTAP9-8Q9BYQ0 159 aa3.43□□□□□ -1.86
VPS36-201ENST00000378060 MT2AP02795 61 aa3.42□□□□□ -1.86
VPS36-201ENST00000378060 MT1FP04733 61 aa3.42□□□□□ -1.86
VPS36-201ENST00000378060 SPRR2GQ9BYE4 73 aa3.38□□□□□ -1.87
VPS36-201ENST00000378060 CRCT1Q9UGL9 99 aa3.34□□□□□ -1.87
VPS36-201ENST00000378060 KRTAP9-3Q9BYQ3 159 aa3.3□□□□□ -1.88
VPS36-201ENST00000378060 SSPOA2VEC9 5147 aa3.29□□□□□ -1.88
VPS36-201ENST00000378060 LCE2DQ5TA82 110 aaPredicted RBP3.29□□□□□ -1.88
VPS36-201ENST00000378060 LCE2BO14633 110 aa3.28□□□□□ -1.88
VPS36-201ENST00000378060 KRTAP8-1Q8IUC2 63 aa3.28□□□□□ -1.88
VPS36-201ENST00000378060 KRTAP19-1Q8IUB9 90 aa3.28□□□□□ -1.88
VPS36-201ENST00000378060 KRTAP9-2Q9BYQ4 174 aa3.24□□□□□ -1.89
VPS36-201ENST00000378060 KRTAP19-4Q3LI73 84 aa3.24□□□□□ -1.89
VPS36-201ENST00000378060 KRTAP10-5P60370 271 aa3.23□□□□□ -1.89
VPS36-201ENST00000378060 MT1BP07438 61 aa3.18□□□□□ -1.9
VPS36-201ENST00000378060 LCE3CQ5T5A8 94 aa3.17□□□□□ -1.9
VPS36-201ENST00000378060 KRTAP19-8Q3LI54 63 aa3.15□□□□□ -1.9
VPS36-201ENST00000378060 KRTAP19-5Q3LI72 72 aa3.15□□□□□ -1.9
VPS36-201ENST00000378060 FCGBPQ9Y6R7 5405 aaPredicted RBP3.14□□□□□ -1.91
VPS36-201ENST00000378060 KMT2DO14686 5537 aa3.14□□□□□ -1.91
VPS36-201ENST00000378060 SPRR5A0A1B0GTR4 108 aa3.1□□□□□ -1.91
VPS36-201ENST00000378060 MACF1Q9UPN3 7388 aaKnown RBP3.06□□□□□ -1.92
VPS36-201ENST00000378060 MT1XP80297 61 aa3.05□□□□□ -1.92
VPS36-201ENST00000378060 SYNE2Q8WXH0 6885 aaKnown RBP3.05□□□□□ -1.92
VPS36-201ENST00000378060 KRTAP10-7P60409 375 aaPredicted RBP3.04□□□□□ -1.92
VPS36-201ENST00000378060 KRTAP19-6Q3LI70 58 aa3.03□□□□□ -1.93
VPS36-201ENST00000378060 KRTAP9-6A0A140TA67 174 aa3.01□□□□□ -1.93
VPS36-201ENST00000378060 SPRR2FQ96RM1 72 aa2.98□□□□□ -1.93
VPS36-201ENST00000378060 LOC100996750A0A140TA64 210 aa2.95□□□□□ -1.94
VPS36-201ENST00000378060 KRTAP4-6Q9BYQ5 205 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms