RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 RYR2Q92736 4967 aa4.77□□□□□ -1.65
SNRNP40-202ENST00000373720 EPPK1P58107 5090 aaKnown RBP4.77□□□□□ -1.65
SNRNP40-202ENST00000373720 PKHD1P08F94 4074 aa4.75□□□□□ -1.65
SNRNP40-202ENST00000373720 Q5VV11 94 aa4.75□□□□□ -1.65
SNRNP40-202ENST00000373720 BRK1Q8WUW1 75 aa4.75□□□□□ -1.65
SNRNP40-202ENST00000373720 PSPHP1O15172 72 aa4.74□□□□□ -1.65
SNRNP40-202ENST00000373720 ATP11AUNQ6ZP68 121 aa4.74□□□□□ -1.65
SNRNP40-202ENST00000373720 PKHD1L1Q86WI1 4243 aa4.72□□□□□ -1.65
SNRNP40-202ENST00000373720 APOBP04114 4563 aaKnown RBP4.72□□□□□ -1.65
SNRNP40-202ENST00000373720 SEC61GP60059 68 aa4.71□□□□□ -1.66
SNRNP40-202ENST00000373720 CDC42SE1Q9NRR8 79 aa4.7□□□□□ -1.66
SNRNP40-202ENST00000373720 A0A1B0GU69 56 aa4.69□□□□□ -1.66
SNRNP40-202ENST00000373720 A6NED7 52 aa4.69□□□□□ -1.66
SNRNP40-202ENST00000373720 SPINK7P58062 85 aa4.69□□□□□ -1.66
SNRNP40-202ENST00000373720 RETNLBQ9BQ08 111 aa4.69□□□□□ -1.66
SNRNP40-202ENST00000373720 C9orf92A6NGG3 77 aa4.68□□□□□ -1.66
SNRNP40-202ENST00000373720 RPL37P61927 97 aaKnown RBP4.68□□□□□ -1.66
SNRNP40-202ENST00000373720 COX6B2Q6YFQ2 88 aa4.67□□□□□ -1.66
SNRNP40-202ENST00000373720 FLG2Q5D862 2391 aaPredicted RBP4.65□□□□□ -1.66
SNRNP40-202ENST00000373720 UQCR11O14957 56 aa4.65□□□□□ -1.67
SNRNP40-202ENST00000373720 TPRXLQ17RH7 258 aa4.65□□□□□ -1.67
SNRNP40-202ENST00000373720 FAT1Q14517 4588 aa4.62□□□□□ -1.67
SNRNP40-202ENST00000373720 MT1HL1P0DM35 61 aa4.61□□□□□ -1.67
SNRNP40-202ENST00000373720 SPATA8Q6RVD6 105 aa4.6□□□□□ -1.67
SNRNP40-202ENST00000373720 LCA10Q71F78 164 aa4.57□□□□□ -1.68
SNRNP40-202ENST00000373720 HERC2O95714 4834 aa4.57□□□□□ -1.68
SNRNP40-202ENST00000373720 PMAIP1Q13794 54 aa4.56□□□□□ -1.68
SNRNP40-202ENST00000373720 MIR22HGQ0VDD5 57 aa4.55□□□□□ -1.68
SNRNP40-202ENST00000373720 RYR1P21817 5038 aa4.55□□□□□ -1.68
SNRNP40-202ENST00000373720 HSPG2P98160 4391 aa4.55□□□□□ -1.68
SNRNP40-202ENST00000373720 RBM12B-AS1Q9P1G2 102 aa4.53□□□□□ -1.68
SNRNP40-202ENST00000373720 TNXBP22105 4242 aa4.53□□□□□ -1.68
SNRNP40-202ENST00000373720 KRTAP23-1A1A580 65 aa4.52□□□□□ -1.69
SNRNP40-202ENST00000373720 SEC61BP60468 96 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-202ENST00000373720 PCLOQ9Y6V0 5065 aa4.52□□□□□ -1.69
SNRNP40-202ENST00000373720 FAT3Q8TDW7 4589 aa4.51□□□□□ -1.69
SNRNP40-202ENST00000373720 H1FX-AS1Q4G0G2 97 aa4.5□□□□□ -1.69
SNRNP40-202ENST00000373720 DMBT1Q9UGM3 2413 aaPredicted RBP4.49□□□□□ -1.69
SNRNP40-202ENST00000373720 A0A1B0GU33 70 aa4.49□□□□□ -1.69
SNRNP40-202ENST00000373720 KTN1-AS1Q86SY8 53 aa4.47□□□□□ -1.69
SNRNP40-202ENST00000373720 S4R3F8 94 aa4.47□□□□□ -1.69
SNRNP40-202ENST00000373720 KIAA1109Q2LD37 5005 aa4.46□□□□□ -1.69
SNRNP40-202ENST00000373720 A6NN06 94 aa4.46□□□□□ -1.7
SNRNP40-202ENST00000373720 K7ERS5 55 aa4.45□□□□□ -1.7
SNRNP40-202ENST00000373720 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
SNRNP40-202ENST00000373720 H0YAA0 97 aa4.43□□□□□ -1.7
SNRNP40-202ENST00000373720 LRP1Q07954 4544 aaKnown RBP4.42□□□□□ -1.7
SNRNP40-202ENST00000373720 CSAG1Q6PB30 78 aa4.42□□□□□ -1.7
SNRNP40-202ENST00000373720 ABCA13Q86UQ4 5058 aa4.38□□□□□ -1.71
SNRNP40-202ENST00000373720 A8MU10 97 aa4.37□□□□□ -1.71
SNRNP40-202ENST00000373720 M0QZ58 72 aa4.36□□□□□ -1.71
SNRNP40-202ENST00000373720 KRTAP10-6P60371 365 aaPredicted RBP4.32□□□□□ -1.72
SNRNP40-202ENST00000373720 MYCBP2O75592 4640 aa4.32□□□□□ -1.72
SNRNP40-202ENST00000373720 HERC1Q15751 4861 aa4.25□□□□□ -1.73
SNRNP40-202ENST00000373720 ADM2Q7Z4H4 148 aa4.25□□□□□ -1.73
SNRNP40-202ENST00000373720 CRIPTQ9P021 101 aa4.21□□□□□ -1.74
SNRNP40-202ENST00000373720 P0C880 135 aa4.18□□□□□ -1.74
SNRNP40-202ENST00000373720 ROMO1P60602 79 aa4.18□□□□□ -1.74
SNRNP40-202ENST00000373720 LRP2P98164 4655 aa4.18□□□□□ -1.74
SNRNP40-202ENST00000373720 R4GN34 69 aa4.16□□□□□ -1.74
SNRNP40-202ENST00000373720 KRTAP13-4Q3LI77 160 aa4.13□□□□□ -1.75
SNRNP40-202ENST00000373720 MUC17Q685J3 4493 aa4.12□□□□□ -1.75
SNRNP40-202ENST00000373720 KRTAP19-2Q3LHN2 52 aa4.12□□□□□ -1.75
SNRNP40-202ENST00000373720 A0A0A0MQY5 61 aa4.11□□□□□ -1.75
SNRNP40-202ENST00000373720 A0A0D9SG42 100 aa4.1□□□□□ -1.75
SNRNP40-202ENST00000373720 KRTAP25-1Q3LHN0 102 aa4.1□□□□□ -1.75
SNRNP40-202ENST00000373720 KRTAP12-1P59990 96 aa4.09□□□□□ -1.75
SNRNP40-202ENST00000373720 LINC01554Q52M75 96 aa4.09□□□□□ -1.75
SNRNP40-202ENST00000373720 KRTAP4-1Q9BYQ7 146 aa4.09□□□□□ -1.75
SNRNP40-202ENST00000373720 LPAP08519 4548 aa4.06□□□□□ -1.76
SNRNP40-202ENST00000373720 SPINT4Q6UDR6 99 aa4.05□□□□□ -1.76
SNRNP40-202ENST00000373720 PRAC1Q96KF2 57 aa4.05□□□□□ -1.76
SNRNP40-202ENST00000373720 KRTAP12-2P59991 146 aa4.03□□□□□ -1.76
SNRNP40-202ENST00000373720 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.03□□□□□ -1.76
SNRNP40-202ENST00000373720 UBR4Q5T4S7 5183 aa4.03□□□□□ -1.76
SNRNP40-202ENST00000373720 HMCN2Q8NDA2 5059 aa4.01□□□□□ -1.77
SNRNP40-202ENST00000373720 KRTAP10-7P60409 375 aaPredicted RBP4.01□□□□□ -1.77
SNRNP40-202ENST00000373720 PP632Q6XCG6 107 aa3.96□□□□□ -1.78
SNRNP40-202ENST00000373720 FLGP20930 4061 aaPredicted RBP3.95□□□□□ -1.78
SNRNP40-202ENST00000373720 LCE1AQ5T7P2 110 aa3.95□□□□□ -1.78
SNRNP40-202ENST00000373720 KRTAP5-11Q6L8G4 156 aa3.93□□□□□ -1.78
SNRNP40-202ENST00000373720 CAMK2N1Q7Z7J9 78 aa3.92□□□□□ -1.78
SNRNP40-202ENST00000373720 SPRR2GQ9BYE4 73 aa3.91□□□□□ -1.78
SNRNP40-202ENST00000373720 M0R2T5 61 aa3.89□□□□□ -1.79
SNRNP40-202ENST00000373720 PLAC4Q8WY50 150 aa3.87□□□□□ -1.79
SNRNP40-202ENST00000373720 MT1HP80294 61 aa3.86□□□□□ -1.79
SNRNP40-202ENST00000373720 RNF213Q63HN8 5207 aa3.86□□□□□ -1.79
SNRNP40-202ENST00000373720 TNP1P09430 55 aa3.82□□□□□ -1.8
SNRNP40-202ENST00000373720 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
SNRNP40-202ENST00000373720 MUC2Q02817 5179 aa3.81□□□□□ -1.8
SNRNP40-202ENST00000373720 KRTAP10-10P60014 251 aa3.77□□□□□ -1.81
SNRNP40-202ENST00000373720 KRTAP19-8Q3LI54 63 aa3.76□□□□□ -1.81
SNRNP40-202ENST00000373720 MT2AP02795 61 aa3.75□□□□□ -1.81
SNRNP40-202ENST00000373720 KRTAP2-2Q9BYT5 123 aa3.75□□□□□ -1.81
SNRNP40-202ENST00000373720 LCE1EQ5T753 118 aa3.71□□□□□ -1.82
SNRNP40-202ENST00000373720 MT1FP04733 61 aa3.69□□□□□ -1.82
SNRNP40-202ENST00000373720 PRO2289Q9P1D8 64 aa3.68□□□□□ -1.82
SNRNP40-202ENST00000373720 FAT4Q6V0I7 4981 aa3.63□□□□□ -1.83
SNRNP40-202ENST00000373720 MT1BP07438 61 aa3.57□□□□□ -1.84
SNRNP40-202ENST00000373720 LUZP6Q538Z0 58 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms