RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 PRAC1Q96KF2 57 aa4.73□□□□□ -1.65
TRIM55-204ENST00000353317 RPS29P62273 56 aaKnown RBP4.69□□□□□ -1.66
TRIM55-204ENST00000353317 PCLOQ9Y6V0 5065 aa4.67□□□□□ -1.66
TRIM55-204ENST00000353317 C9orf92A6NGG3 77 aa4.63□□□□□ -1.67
TRIM55-204ENST00000353317 LPAP08519 4548 aa4.62□□□□□ -1.67
TRIM55-204ENST00000353317 LINC01554Q52M75 96 aa4.59□□□□□ -1.68
TRIM55-204ENST00000353317 KRTAP3-1Q9BYR8 98 aa4.59□□□□□ -1.68
TRIM55-204ENST00000353317 LRP2P98164 4655 aa4.58□□□□□ -1.68
TRIM55-204ENST00000353317 H0YAA0 97 aa4.58□□□□□ -1.68
TRIM55-204ENST00000353317 C20orf166-AS1Q96NR2 134 aa4.58□□□□□ -1.68
TRIM55-204ENST00000353317 A8MUU9 505 aa4.57□□□□□ -1.68
TRIM55-204ENST00000353317 CSAG1Q6PB30 78 aa4.57□□□□□ -1.68
TRIM55-204ENST00000353317 HERC1Q15751 4861 aa4.56□□□□□ -1.68
TRIM55-204ENST00000353317 A0A1B0GU33 70 aa4.52□□□□□ -1.69
TRIM55-204ENST00000353317 XP32Q5T750 250 aa4.51□□□□□ -1.69
TRIM55-204ENST00000353317 J3QL48 77 aa4.5□□□□□ -1.69
TRIM55-204ENST00000353317 H1FX-AS1Q4G0G2 97 aa4.5□□□□□ -1.69
TRIM55-204ENST00000353317 COX6B2Q6YFQ2 88 aa4.45□□□□□ -1.7
TRIM55-204ENST00000353317 RPL37P61927 97 aaKnown RBP4.44□□□□□ -1.7
TRIM55-204ENST00000353317 TPRXLQ17RH7 258 aa4.44□□□□□ -1.7
TRIM55-204ENST00000353317 HMCN2Q8NDA2 5059 aa4.43□□□□□ -1.7
TRIM55-204ENST00000353317 KRTAP25-1Q3LHN0 102 aa4.42□□□□□ -1.7
TRIM55-204ENST00000353317 MUC2Q02817 5179 aa4.39□□□□□ -1.71
TRIM55-204ENST00000353317 KRTAP3-3Q9BYR6 98 aa4.39□□□□□ -1.71
TRIM55-204ENST00000353317 K7ERS5 55 aa4.37□□□□□ -1.71
TRIM55-204ENST00000353317 KRTAP10-6P60371 365 aaPredicted RBP4.37□□□□□ -1.71
TRIM55-204ENST00000353317 CRIPTQ9P021 101 aa4.37□□□□□ -1.71
TRIM55-204ENST00000353317 KRTAP4-1Q9BYQ7 146 aa4.36□□□□□ -1.71
TRIM55-204ENST00000353317 MUC17Q685J3 4493 aa4.36□□□□□ -1.71
TRIM55-204ENST00000353317 KRTAP13-4Q3LI77 160 aa4.35□□□□□ -1.71
TRIM55-204ENST00000353317 KRTAP3-2Q9BYR7 98 aa4.33□□□□□ -1.72
TRIM55-204ENST00000353317 ROMO1P60602 79 aa4.32□□□□□ -1.72
TRIM55-204ENST00000353317 A0A0D9SG42 100 aa4.31□□□□□ -1.72
TRIM55-204ENST00000353317 UBR4Q5T4S7 5183 aa4.3□□□□□ -1.72
TRIM55-204ENST00000353317 S4R3F8 94 aa4.29□□□□□ -1.72
TRIM55-204ENST00000353317 H3BS24 57 aa4.28□□□□□ -1.72
TRIM55-204ENST00000353317 P0C880 135 aa4.27□□□□□ -1.73
TRIM55-204ENST00000353317 RNF213Q63HN8 5207 aa4.27□□□□□ -1.73
TRIM55-204ENST00000353317 SEC61BP60468 96 aaKnown RBP4.25□□□□□ -1.73
TRIM55-204ENST00000353317 KRTAP19-2Q3LHN2 52 aa4.23□□□□□ -1.73
TRIM55-204ENST00000353317 KRTAP12-2P59991 146 aa4.21□□□□□ -1.74
TRIM55-204ENST00000353317 C10orf95Q9H7T3 257 aa4.2□□□□□ -1.74
TRIM55-204ENST00000353317 FAT4Q6V0I7 4981 aa4.19□□□□□ -1.74
TRIM55-204ENST00000353317 KRTAP12-1P59990 96 aa4.16□□□□□ -1.74
TRIM55-204ENST00000353317 SPINT4Q6UDR6 99 aa4.15□□□□□ -1.74
TRIM55-204ENST00000353317 FLGP20930 4061 aaPredicted RBP4.14□□□□□ -1.75
TRIM55-204ENST00000353317 LCE2DQ5TA82 110 aaPredicted RBP4.14□□□□□ -1.75
TRIM55-204ENST00000353317 LCE2CQ5TA81 110 aa4.11□□□□□ -1.75
TRIM55-204ENST00000353317 M0QZ58 72 aa4.1□□□□□ -1.75
TRIM55-204ENST00000353317 KRTAP15-1Q3LI76 137 aa4.07□□□□□ -1.76
TRIM55-204ENST00000353317 KRTAP9-6A0A140TA67 174 aa4.04□□□□□ -1.76
TRIM55-204ENST00000353317 R4GN34 69 aa4□□□□□ -1.77
TRIM55-204ENST00000353317 NDUFAF8A1L188 74 aa4□□□□□ -1.77
TRIM55-204ENST00000353317 MT1HP80294 61 aa3.99□□□□□ -1.77
TRIM55-204ENST00000353317 LORP23490 312 aaPredicted RBP3.97□□□□□ -1.77
TRIM55-204ENST00000353317 KRTAP9-2Q9BYQ4 174 aa3.91□□□□□ -1.78
TRIM55-204ENST00000353317 M0R2T5 61 aa3.88□□□□□ -1.79
TRIM55-204ENST00000353317 KRTAP9-8Q9BYQ0 159 aa3.87□□□□□ -1.79
TRIM55-204ENST00000353317 PLAC4Q8WY50 150 aa3.84□□□□□ -1.79
TRIM55-204ENST00000353317 LCE2AQ5TA79 106 aaPredicted RBP3.84□□□□□ -1.8
TRIM55-204ENST00000353317 MT2AP02795 61 aa3.83□□□□□ -1.8
TRIM55-204ENST00000353317 MT1FP04733 61 aa3.83□□□□□ -1.8
TRIM55-204ENST00000353317 CAMK2N1Q7Z7J9 78 aa3.8□□□□□ -1.8
TRIM55-204ENST00000353317 KRTAP19-1Q8IUB9 90 aa3.77□□□□□ -1.81
TRIM55-204ENST00000353317 PP632Q6XCG6 107 aa3.76□□□□□ -1.81
TRIM55-204ENST00000353317 KRTAP10-10P60014 251 aa3.76□□□□□ -1.81
TRIM55-204ENST00000353317 SPRR2GQ9BYE4 73 aa3.72□□□□□ -1.81
TRIM55-204ENST00000353317 KRTAP9-3Q9BYQ3 159 aa3.72□□□□□ -1.81
TRIM55-204ENST00000353317 A0A0A0MQY5 61 aa3.68□□□□□ -1.82
TRIM55-204ENST00000353317 LUZP6Q538Z0 58 aa3.67□□□□□ -1.82
TRIM55-204ENST00000353317 TNP1P09430 55 aa3.66□□□□□ -1.82
TRIM55-204ENST00000353317 USH2AO75445 5202 aa3.66□□□□□ -1.82
TRIM55-204ENST00000353317 LCE2BO14633 110 aa3.65□□□□□ -1.83
TRIM55-204ENST00000353317 MT1BP07438 61 aa3.63□□□□□ -1.83
TRIM55-204ENST00000353317 CRCT1Q9UGL9 99 aa3.63□□□□□ -1.83
TRIM55-204ENST00000353317 KRTAP19-8Q3LI54 63 aa3.62□□□□□ -1.83
TRIM55-204ENST00000353317 KRTAP23-1A1A580 65 aa3.61□□□□□ -1.83
TRIM55-204ENST00000353317 SPRR5A0A1B0GTR4 108 aa3.57□□□□□ -1.84
TRIM55-204ENST00000353317 FSIP2Q5CZC0 6907 aa3.56□□□□□ -1.84
TRIM55-204ENST00000353317 KRTAP9-7A8MTY7 169 aa3.53□□□□□ -1.84
TRIM55-204ENST00000353317 MT1XP80297 61 aa3.51□□□□□ -1.85
TRIM55-204ENST00000353317 HMCN1Q96RW7 5635 aa3.51□□□□□ -1.85
TRIM55-204ENST00000353317 SSPOA2VEC9 5147 aa3.5□□□□□ -1.85
TRIM55-204ENST00000353317 KRTAP10-5P60370 271 aa3.5□□□□□ -1.85
TRIM55-204ENST00000353317 LCE3AQ5TA76 89 aa3.48□□□□□ -1.85
TRIM55-204ENST00000353317 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.41□□□□□ -1.86
TRIM55-204ENST00000353317 KMT2DO14686 5537 aa3.4□□□□□ -1.86
TRIM55-204ENST00000353317 KRTAP10-7P60409 375 aaPredicted RBP3.39□□□□□ -1.87
TRIM55-204ENST00000353317 KRTAP8-1Q8IUC2 63 aa3.39□□□□□ -1.87
TRIM55-204ENST00000353317 KRTAP19-6Q3LI70 58 aa3.34□□□□□ -1.87
TRIM55-204ENST00000353317 FCGBPQ9Y6R7 5405 aaPredicted RBP3.33□□□□□ -1.88
TRIM55-204ENST00000353317 PRO2289Q9P1D8 64 aa3.32□□□□□ -1.88
TRIM55-204ENST00000353317 KRTAP12-3P60328 96 aa3.3□□□□□ -1.88
TRIM55-204ENST00000353317 KRTAP10-12P60413 245 aa3.3□□□□□ -1.88
TRIM55-204ENST00000353317 KRTAP4-8A0A0G2JLE6 195 aa3.3□□□□□ -1.88
TRIM55-204ENST00000353317 KRTAP4-8Q9BYQ9 185 aa3.3□□□□□ -1.88
TRIM55-204ENST00000353317 MACF1Q9UPN3 7388 aaKnown RBP3.19□□□□□ -1.9
TRIM55-204ENST00000353317 INE1O15225 51 aa3.17□□□□□ -1.9
TRIM55-204ENST00000353317 KRTAP19-5Q3LI72 72 aa3.16□□□□□ -1.9
TRIM55-204ENST00000353317 KRTAP19-7Q3SYF9 63 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms